RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 CGB3P0DN86 165 aa3.69□□□□□ -1.82
VPS41-209ENST00000457055 CGB7P0DN87 165 aa3.69□□□□□ -1.82
VPS41-209ENST00000457055 MIFP14174 115 aa3.69□□□□□ -1.82
VPS41-209ENST00000457055 RNASE13Q5GAN3 156 aaKnown RBP3.69□□□□□ -1.82
VPS41-209ENST00000457055 KRTAP5-1Q6L8H4 278 aa3.69□□□□□ -1.82
VPS41-209ENST00000457055 C2orf82Q6UX34 121 aa3.69□□□□□ -1.82
VPS41-209ENST00000457055 ZNF818PQ6ZRF7 136 aa3.69□□□□□ -1.82
VPS41-209ENST00000457055 TXNDC17Q9BRA2 123 aa3.69□□□□□ -1.82
VPS41-209ENST00000457055 CHCHD7Q9BUK0 85 aa3.69□□□□□ -1.82
VPS41-209ENST00000457055 BPESC1Q9GZL8 116 aa3.69□□□□□ -1.82
VPS41-209ENST00000457055 LRP4O75096 1905 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 COL6A5A8TX70 2615 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 TEX49A0A1B0GTD5 131 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 ZNF815PA8K554 130 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 SMIM1B2RUZ4 78 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 SOCS3O14543 225 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 SH2D1AO60880 128 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 LY6HO94772 140 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 IGLV1-51P01701 117 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 IGHV4-34P06331 123 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 HMGA1P17096 107 aaKnown RBP3.68□□□□□ -1.82
VPS41-209ENST00000457055 EDDM3BP56851 147 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 C15orf32Q32M92 178 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 ZNF826PQ6ZT77 177 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 CLECL1Q8IZS7 167 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 ZNF563Q8TA94 476 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 SMCR5Q8TEV8 140 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 LIMD2Q9BT23 127 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 JMJD1CQ15652 2540 aa3.68□□□□□ -1.82
VPS41-209ENST00000457055 PLXNB1O43157 2135 aa3.67□□□□□ -1.82
VPS41-209ENST00000457055 IGLV3-32A0A0A0MS00 114 aa3.67□□□□□ -1.82
VPS41-209ENST00000457055 TRAV22A0A0B4J277 110 aa3.67□□□□□ -1.82
VPS41-209ENST00000457055 IGHV3-66A0A0C4DH42 116 aa3.67□□□□□ -1.82
VPS41-209ENST00000457055 TMEM223A0PJW6 202 aa3.67□□□□□ -1.82
VPS41-209ENST00000457055 PPYP01298 95 aa3.67□□□□□ -1.82
VPS41-209ENST00000457055 IGLV3-25P01717 112 aa3.67□□□□□ -1.82
VPS41-209ENST00000457055 CRPP02741 224 aa3.67□□□□□ -1.82
VPS41-209ENST00000457055 MGST1P10620 155 aaKnown RBP3.67□□□□□ -1.82
VPS41-209ENST00000457055 RPL28P46779 137 aaKnown RBP3.67□□□□□ -1.82
VPS41-209ENST00000457055 SFTA2Q6UW10 78 aa3.67□□□□□ -1.82
VPS41-209ENST00000457055 CASC2Q6XLA1 102 aa3.67□□□□□ -1.82
VPS41-209ENST00000457055 Q8IYB0 196 aa3.67□□□□□ -1.82
VPS41-209ENST00000457055 LINC00574Q9H8X3 128 aa3.67□□□□□ -1.82
VPS41-209ENST00000457055 ANKRD36A6QL64 1941 aa3.67□□□□□ -1.82
VPS41-209ENST00000457055 CNTRLQ7Z7A1 2325 aa3.66□□□□□ -1.82
VPS41-209ENST00000457055 LINC01549A6NIU2 74 aa3.66□□□□□ -1.82
VPS41-209ENST00000457055 ERC2-IT1O76042 136 aa3.66□□□□□ -1.82
VPS41-209ENST00000457055 IGHV3-23P01764 117 aa3.66□□□□□ -1.82
VPS41-209ENST00000457055 PRB4P10163 310 aaPredicted RBP3.66□□□□□ -1.82
VPS41-209ENST00000457055 ZNF22P17026 224 aaPredicted RBP3.66□□□□□ -1.82
VPS41-209ENST00000457055 UBE2D1P51668 147 aa3.66□□□□□ -1.82
VPS41-209ENST00000457055 MRGPRG-AS1Q2M3A8 158 aa3.66□□□□□ -1.82
VPS41-209ENST00000457055 FAM229BQ4G0N7 80 aa3.66□□□□□ -1.82
VPS41-209ENST00000457055 ADM2Q7Z4H4 148 aa3.66□□□□□ -1.82
VPS41-209ENST00000457055 PROK2Q9HC23 129 aa3.66□□□□□ -1.82
VPS41-209ENST00000457055 ZNF355PQ9NSJ1 428 aa3.66□□□□□ -1.82
VPS41-209ENST00000457055 IGHV5-10-1A0A0J9YXX1 117 aa3.65□□□□□ -1.83
VPS41-209ENST00000457055 SDHAF1A6NFY7 115 aa3.65□□□□□ -1.83
VPS41-209ENST00000457055 A8MWP4 228 aa3.65□□□□□ -1.83
VPS41-209ENST00000457055 CHKB-CPT1BH3BT56 60 aa3.65□□□□□ -1.83
VPS41-209ENST00000457055 LECT2O14960 151 aa3.65□□□□□ -1.83
VPS41-209ENST00000457055 IGKV1D-33P01593 117 aa3.65□□□□□ -1.83
VPS41-209ENST00000457055 IGKV1-33P01594 117 aa3.65□□□□□ -1.83
VPS41-209ENST00000457055 IGLV2-11P01706 119 aa3.65□□□□□ -1.83
VPS41-209ENST00000457055 C1orf134Q5TEV5 83 aa3.65□□□□□ -1.83
VPS41-209ENST00000457055 C20orf203Q8NBC4 194 aa3.65□□□□□ -1.83
VPS41-209ENST00000457055 UBE2D4Q9Y2X8 147 aa3.65□□□□□ -1.83
VPS41-209ENST00000457055 IGHV3-73A0A0B4J1V6 119 aa3.64□□□□□ -1.83
VPS41-209ENST00000457055 B4DSR2 109 aa3.64□□□□□ -1.83
VPS41-209ENST00000457055 PRAC2D3DTV9 90 aa3.64□□□□□ -1.83
VPS41-209ENST00000457055 BPY2O14599 106 aa3.64□□□□□ -1.83
VPS41-209ENST00000457055 TRGV3P03979 118 aa3.64□□□□□ -1.83
VPS41-209ENST00000457055 SPINT3P49223 89 aa3.64□□□□□ -1.83
VPS41-209ENST00000457055 ROMO1P60602 79 aa3.64□□□□□ -1.83
VPS41-209ENST00000457055 DYNAPQ8N1N2 210 aa3.64□□□□□ -1.83
VPS41-209ENST00000457055 C1orf147Q96MC9 270 aaPredicted RBP3.64□□□□□ -1.83
VPS41-209ENST00000457055 PSENENQ9NZ42 101 aa3.64□□□□□ -1.83
VPS41-209ENST00000457055 U3KQA8 63 aa3.64□□□□□ -1.83
VPS41-209ENST00000457055 STAB1Q9NY15 2570 aa3.63□□□□□ -1.83
VPS41-209ENST00000457055 PKD1L1Q8TDX9 2849 aa3.63□□□□□ -1.83
VPS41-209ENST00000457055 SCN3AQ9NY46 2000 aa3.63□□□□□ -1.83
VPS41-209ENST00000457055 TMEM14DPA8MWL7 114 aa3.63□□□□□ -1.83
VPS41-209ENST00000457055 E7EUB6 86 aa3.63□□□□□ -1.83
VPS41-209ENST00000457055 IGHV1-8P0DP01 117 aa3.63□□□□□ -1.83
VPS41-209ENST00000457055 SERF2P84101 59 aa3.63□□□□□ -1.83
VPS41-209ENST00000457055 Q5VV11 94 aa3.63□□□□□ -1.83
VPS41-209ENST00000457055 Q8NDZ9 215 aa3.63□□□□□ -1.83
VPS41-209ENST00000457055 SMR3AQ99954 134 aa3.63□□□□□ -1.83
VPS41-209ENST00000457055 ABCA4P78363 2273 aa3.63□□□□□ -1.83
VPS41-209ENST00000457055 TGP01266 2768 aa3.63□□□□□ -1.83
VPS41-209ENST00000457055 AKAP6Q13023 2319 aa3.62□□□□□ -1.83
VPS41-209ENST00000457055 PCNX3Q9H6A9 2034 aa3.62□□□□□ -1.83
VPS41-209ENST00000457055 IGLV3-19P01714 112 aa3.62□□□□□ -1.83
VPS41-209ENST00000457055 CISD3P0C7P0 127 aa3.62□□□□□ -1.83
VPS41-209ENST00000457055 FCER1GP30273 86 aa3.62□□□□□ -1.83
VPS41-209ENST00000457055 DEFB109BQ30KR1 87 aa3.62□□□□□ -1.83
VPS41-209ENST00000457055 C10orf128Q5T292 105 aa3.62□□□□□ -1.83
VPS41-209ENST00000457055 TIMM9Q9Y5J7 89 aa3.62□□□□□ -1.83
VPS41-209ENST00000457055 CACNA1CQ13936 2221 aa3.62□□□□□ -1.83
VPS41-209ENST00000457055 IGHV1-46P01743 117 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 134.5 ms