RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 FAM223AQ8IWN6 122 aa-0.26□□□□□ -2.45
USP40-209ENST00000452724 USF3Q68DE3 2245 aa-0.26□□□□□ -2.45
USP40-209ENST00000452724 MYH9P35579 1960 aaKnown RBP-0.26□□□□□ -2.45
USP40-209ENST00000452724 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.27□□□□□ -2.45
USP40-209ENST00000452724 ZNF236Q9UL36 1845 aa-0.27□□□□□ -2.45
USP40-209ENST00000452724 KMT2AQ03164 3969 aa-0.27□□□□□ -2.45
USP40-209ENST00000452724 MYOM1P52179 1685 aa-0.27□□□□□ -2.45
USP40-209ENST00000452724 HMGXB3Q12766 1538 aa-0.27□□□□□ -2.45
USP40-209ENST00000452724 SCAPERQ9BY12 1400 aa-0.27□□□□□ -2.45
USP40-209ENST00000452724 Q0VG73 95 aa-0.27□□□□□ -2.45
USP40-209ENST00000452724 MYO7BQ6PIF6 2116 aa-0.27□□□□□ -2.45
USP40-209ENST00000452724 MANBALQ9NQG1 85 aa-0.27□□□□□ -2.45
USP40-209ENST00000452724 PRO1854Q9UHT4 67 aa-0.27□□□□□ -2.45
USP40-209ENST00000452724 HSPG2P98160 4391 aa-0.27□□□□□ -2.45
USP40-209ENST00000452724 CHD6Q8TD26 2715 aa-0.27□□□□□ -2.45
USP40-209ENST00000452724 PAPPAQ13219 1627 aa-0.27□□□□□ -2.45
USP40-209ENST00000452724 GAPVD1Q14C86 1478 aa-0.28□□□□□ -2.45
USP40-209ENST00000452724 K7EQZ3 153 aa-0.28□□□□□ -2.45
USP40-209ENST00000452724 TRAPPC2P0DI81 140 aa-0.28□□□□□ -2.45
USP40-209ENST00000452724 TRAPPC2BP0DI82 140 aa-0.28□□□□□ -2.45
USP40-209ENST00000452724 PRO1933Q9H354 126 aa-0.28□□□□□ -2.45
USP40-209ENST00000452724 LINC00846Q9NV44 126 aa-0.28□□□□□ -2.45
USP40-209ENST00000452724 GNG8Q9UK08 70 aa-0.28□□□□□ -2.45
USP40-209ENST00000452724 MAPKBP1O60336 1514 aa-0.28□□□□□ -2.45
USP40-209ENST00000452724 VWFP04275 2813 aa-0.28□□□□□ -2.45
USP40-209ENST00000452724 SPTBN1Q01082 2364 aaKnown RBP-0.28□□□□□ -2.45
USP40-209ENST00000452724 SPINK4O60575 86 aa-0.29□□□□□ -2.46
USP40-209ENST00000452724 SAA2P0DJI9 122 aaPredicted RBP-0.29□□□□□ -2.46
USP40-209ENST00000452724 LRP2P98164 4655 aa-0.29□□□□□ -2.46
USP40-209ENST00000452724 TULP4Q9NRJ4 1543 aa-0.29□□□□□ -2.46
USP40-209ENST00000452724 PKD1L1Q8TDX9 2849 aa-0.29□□□□□ -2.46
USP40-209ENST00000452724 SBF2Q86WG5 1849 aa-0.29□□□□□ -2.46
USP40-209ENST00000452724 DOCK2Q92608 1830 aa-0.29□□□□□ -2.46
USP40-209ENST00000452724 MAGI1Q96QZ7 1491 aaPredicted RBP-0.29□□□□□ -2.46
USP40-209ENST00000452724 MYH8P13535 1937 aa-0.3□□□□□ -2.46
USP40-209ENST00000452724 A0A1B0GWA3 101 aa-0.3□□□□□ -2.46
USP40-209ENST00000452724 S100A1P23297 94 aa-0.3□□□□□ -2.46
USP40-209ENST00000452724 KRTDAPP60985 99 aa-0.3□□□□□ -2.46
USP40-209ENST00000452724 KRTAP6-1Q3LI64 71 aa-0.3□□□□□ -2.46
USP40-209ENST00000452724 LINC01600Q96MT4 127 aa-0.3□□□□□ -2.46
USP40-209ENST00000452724 C12orf57Q99622 126 aa-0.3□□□□□ -2.46
USP40-209ENST00000452724 MYCBP2O75592 4640 aa-0.3□□□□□ -2.46
USP40-209ENST00000452724 EHBP1L1Q8N3D4 1523 aa-0.3□□□□□ -2.46
USP40-209ENST00000452724 FLNAP21333 2647 aaKnown RBP-0.31□□□□□ -2.46
USP40-209ENST00000452724 LINC00959A0A1B0GUT2 108 aa-0.31□□□□□ -2.46
USP40-209ENST00000452724 LINC00587B1AMM8 73 aa-0.31□□□□□ -2.46
USP40-209ENST00000452724 NALCNQ8IZF0 1738 aa-0.31□□□□□ -2.46
USP40-209ENST00000452724 ARHGEF12Q9NZN5 1544 aa-0.32□□□□□ -2.46
USP40-209ENST00000452724 ROBO1Q9Y6N7 1651 aa-0.32□□□□□ -2.46
USP40-209ENST00000452724 ADGRL2O95490 1459 aa-0.32□□□□□ -2.46
USP40-209ENST00000452724 MRC2Q9UBG0 1479 aa-0.32□□□□□ -2.46
USP40-209ENST00000452724 FAM223BA6NKX1 122 aa-0.32□□□□□ -2.46
USP40-209ENST00000452724 TMEM262E9PQX1 116 aa-0.32□□□□□ -2.46
USP40-209ENST00000452724 FDCSPQ8NFU4 85 aa-0.32□□□□□ -2.46
USP40-209ENST00000452724 USMG5Q96IX5 58 aa-0.32□□□□□ -2.46
USP40-209ENST00000452724 CGREF1Q99674 301 aa-0.32□□□□□ -2.46
USP40-209ENST00000452724 GVINP1Q7Z2Y8 2422 aa-0.32□□□□□ -2.46
USP40-209ENST00000452724 SHROOM2Q13796 1616 aa-0.32□□□□□ -2.46
USP40-209ENST00000452724 TNXBP22105 4242 aa-0.32□□□□□ -2.46
USP40-209ENST00000452724 SETBP1Q9Y6X0 1596 aa-0.32□□□□□ -2.46
USP40-209ENST00000452724 MYH7P12883 1935 aa-0.32□□□□□ -2.46
USP40-209ENST00000452724 TET3O43151 1660 aa-0.33□□□□□ -2.46
USP40-209ENST00000452724 COX8AP10176 69 aa-0.33□□□□□ -2.46
USP40-209ENST00000452724 SPRR2BP35325 72 aa-0.33□□□□□ -2.46
USP40-209ENST00000452724 GTF2H5Q6ZYL4 71 aa-0.33□□□□□ -2.46
USP40-209ENST00000452724 STAB1Q9NY15 2570 aa-0.33□□□□□ -2.46
USP40-209ENST00000452724 SNCAP37840 140 aa-0.34□□□□□ -2.46
USP40-209ENST00000452724 HSD52Q0P140 79 aa-0.34□□□□□ -2.46
USP40-209ENST00000452724 ARHGEF5Q12774 1597 aa-0.34□□□□□ -2.46
USP40-209ENST00000452724 DIP2CQ9Y2E4 1556 aa-0.34□□□□□ -2.46
USP40-209ENST00000452724 ARHGAP5Q13017 1502 aa-0.34□□□□□ -2.46
USP40-209ENST00000452724 DSTQ03001 7570 aaKnown RBP-0.34□□□□□ -2.46
USP40-209ENST00000452724 PIEZO2Q9H5I5 2752 aa-0.34□□□□□ -2.46
USP40-209ENST00000452724 APC2O95996 2303 aa-0.35□□□□□ -2.46
USP40-209ENST00000452724 CSPG4Q6UVK1 2322 aa-0.35□□□□□ -2.46
USP40-209ENST00000452724 PZPP20742 1482 aa-0.35□□□□□ -2.46
USP40-209ENST00000452724 C1orf167Q5SNV9 1468 aa-0.35□□□□□ -2.46
USP40-209ENST00000452724 BSNQ9UPA5 3926 aa-0.35□□□□□ -2.47
USP40-209ENST00000452724 EIF4G3O43432 1585 aaKnown RBP-0.35□□□□□ -2.47
USP40-209ENST00000452724 PSME4Q14997 1843 aa-0.35□□□□□ -2.47
USP40-209ENST00000452724 CRYM-AS1A6NIL9 109 aa-0.35□□□□□ -2.47
USP40-209ENST00000452724 SFTA2Q6UW10 78 aa-0.35□□□□□ -2.47
USP40-209ENST00000452724 FAT2Q9NYQ8 4349 aa-0.35□□□□□ -2.47
USP40-209ENST00000452724 EP300Q09472 2414 aaPredicted RBP-0.35□□□□□ -2.47
USP40-209ENST00000452724 FAM135AQ9P2D6 1515 aa-0.36□□□□□ -2.47
USP40-209ENST00000452724 C20orf202A1L168 122 aa-0.36□□□□□ -2.47
USP40-209ENST00000452724 LOC730098B7Z3J9 87 aa-0.36□□□□□ -2.47
USP40-209ENST00000452724 SYS1-DBNDD2H3BUS1 97 aa-0.36□□□□□ -2.47
USP40-209ENST00000452724 SEC11AP67812 179 aa-0.36□□□□□ -2.47
USP40-209ENST00000452724 DEFB105AQ8NG35 78 aa-0.36□□□□□ -2.47
USP40-209ENST00000452724 LCN9Q8WX39 176 aa-0.36□□□□□ -2.47
USP40-209ENST00000452724 CHD8Q9HCK8 2581 aa-0.36□□□□□ -2.47
USP40-209ENST00000452724 NRKQ7Z2Y5 1582 aa-0.36□□□□□ -2.47
USP40-209ENST00000452724 SPTA1P02549 2419 aa-0.37□□□□□ -2.47
USP40-209ENST00000452724 ALMS1Q8TCU4 4167 aa-0.37□□□□□ -2.47
USP40-209ENST00000452724 hADV29S1A0JD25 119 aa-0.37□□□□□ -2.47
USP40-209ENST00000452724 NDUFC1O43677 76 aa-0.37□□□□□ -2.47
USP40-209ENST00000452724 VAMP8Q9BV40 100 aa-0.37□□□□□ -2.47
USP40-209ENST00000452724 MAP1BP46821 2468 aaKnown RBP-0.37□□□□□ -2.47
USP40-209ENST00000452724 KDM5AP29375 1690 aaKnown RBP-0.37□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms