RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 FLNBO75369 2602 aaKnown RBP13.87□□□□□ -0.19
HMGA1-205ENST00000447654 Q9HAA7 133 aa13.86□□□□□ -0.19
HMGA1-205ENST00000447654 CDKN2A-AS1Q9UH64 79 aa13.86□□□□□ -0.19
HMGA1-205ENST00000447654 TRBV12-3P01733 135 aa13.86□□□□□ -0.19
HMGA1-205ENST00000447654 DEFB1P60022 68 aa13.86□□□□□ -0.19
HMGA1-205ENST00000447654 LYPD5Q6UWN5 251 aa13.85□□□□□ -0.19
HMGA1-205ENST00000447654 RPL35AP18077 110 aaKnown RBP13.85□□□□□ -0.19
HMGA1-205ENST00000447654 KNCNA6PVL3 124 aa13.84□□□□□ -0.19
HMGA1-205ENST00000447654 RS1O15537 224 aa13.84□□□□□ -0.19
HMGA1-205ENST00000447654 AVPP01185 164 aa13.84□□□□□ -0.19
HMGA1-205ENST00000447654 FAM19A3Q7Z5A8 133 aa13.84□□□□□ -0.19
HMGA1-205ENST00000447654 C16orf95Q9H693 158 aa13.84□□□□□ -0.19
HMGA1-205ENST00000447654 CCKP06307 115 aa13.83□□□□□ -0.19
HMGA1-205ENST00000447654 CHCHD7Q9BUK0 85 aa13.83□□□□□ -0.19
HMGA1-205ENST00000447654 CRPP02741 224 aa13.83□□□□□ -0.2
HMGA1-205ENST00000447654 H7BZZ5 65 aa13.82□□□□□ -0.2
HMGA1-205ENST00000447654 IGHV1OR15-1A0A075B7D0 117 aa13.82□□□□□ -0.2
HMGA1-205ENST00000447654 LY6EQ16553 131 aa13.82□□□□□ -0.2
HMGA1-205ENST00000447654 C19orf54Q5BKX5 351 aa13.82□□□□□ -0.2
HMGA1-205ENST00000447654 C20orf197Q8N268 126 aa13.82□□□□□ -0.2
HMGA1-205ENST00000447654 ZNF625Q96I27 306 aaPredicted RBP13.82□□□□□ -0.2
HMGA1-205ENST00000447654 KLKP1Q107X0 134 aa13.81□□□□□ -0.2
HMGA1-205ENST00000447654 RNASE13Q5GAN3 156 aaKnown RBP13.81□□□□□ -0.2
HMGA1-205ENST00000447654 MOB4Q9Y3A3 225 aa13.81□□□□□ -0.2
HMGA1-205ENST00000447654 V9GYY9 64 aa13.81□□□□□ -0.2
HMGA1-205ENST00000447654 TRAV7A0A075B6U4 112 aa13.8□□□□□ -0.2
HMGA1-205ENST00000447654 SEC61GP60059 68 aa13.8□□□□□ -0.2
HMGA1-205ENST00000447654 UNQ9165/PRO28630Q6UXU0 137 aa13.8□□□□□ -0.2
HMGA1-205ENST00000447654 MSMBP08118 114 aa13.79□□□□□ -0.2
HMGA1-205ENST00000447654 ATP5EP56381 51 aaPredicted RBP13.79□□□□□ -0.2
HMGA1-205ENST00000447654 NAV2Q8IVL1 2488 aa13.78□□□□□ -0.2
HMGA1-205ENST00000447654 TEX15Q9BXT5 2789 aa13.78□□□□□ -0.2
HMGA1-205ENST00000447654 H3BUX3 64 aa13.78□□□□□ -0.2
HMGA1-205ENST00000447654 BLCAPP62952 87 aa13.78□□□□□ -0.2
HMGA1-205ENST00000447654 C9orf129Q5T035 196 aaKnown RBP13.78□□□□□ -0.2
HMGA1-205ENST00000447654 TENM4Q6N022 2769 aa13.77□□□□□ -0.2
HMGA1-205ENST00000447654 PIK3CD-AS1Q5SR53 167 aa13.77□□□□□ -0.21
HMGA1-205ENST00000447654 A0A087WYN8 130 aa13.76□□□□□ -0.21
HMGA1-205ENST00000447654 JMJD7-PLA2G4BH0Y9G9 81 aa13.76□□□□□ -0.21
HMGA1-205ENST00000447654 MAPK1IP1LQ8NDC0 245 aa13.76□□□□□ -0.21
HMGA1-205ENST00000447654 PKIGQ9Y2B9 76 aa13.76□□□□□ -0.21
HMGA1-205ENST00000447654 APCP25054 2843 aa13.76□□□□□ -0.21
HMGA1-205ENST00000447654 HOXD3P31249 432 aaPredicted RBP13.75□□□□□ -0.21
HMGA1-205ENST00000447654 CYSRT1A8MQ03 144 aa13.75□□□□□ -0.21
HMGA1-205ENST00000447654 SMIM1B2RUZ4 78 aa13.75□□□□□ -0.21
HMGA1-205ENST00000447654 NDUFC1O43677 76 aa13.75□□□□□ -0.21
HMGA1-205ENST00000447654 FP248Q71RG6 208 aaPredicted RBP13.75□□□□□ -0.21
HMGA1-205ENST00000447654 RHPN1-AS1Q9BWJ2 59 aa13.75□□□□□ -0.21
HMGA1-205ENST00000447654 TRAV23DV6A0A075B6W5 121 aa13.74□□□□□ -0.21
HMGA1-205ENST00000447654 A6NDX4 124 aa13.74□□□□□ -0.21
HMGA1-205ENST00000447654 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.74□□□□□ -0.21
HMGA1-205ENST00000447654 HILS1P60008 231 aa13.73□□□□□ -0.21
HMGA1-205ENST00000447654 C1orf195Q5TG92 126 aa13.73□□□□□ -0.21
HMGA1-205ENST00000447654 USMG5Q96IX5 58 aa13.73□□□□□ -0.21
HMGA1-205ENST00000447654 LINC00467Q9BRT7 94 aa13.73□□□□□ -0.21
HMGA1-205ENST00000447654 A0A096LNT2 108 aa13.72□□□□□ -0.21
HMGA1-205ENST00000447654 LINC00242Q5T6M2 205 aa13.72□□□□□ -0.21
HMGA1-205ENST00000447654 SMIM11BQ8TCY0 68 aa13.72□□□□□ -0.21
HMGA1-205ENST00000447654 ORMDL1Q9P0S3 153 aa13.72□□□□□ -0.21
HMGA1-205ENST00000447654 DOPEY2Q9Y3R5 2298 aa13.72□□□□□ -0.21
HMGA1-205ENST00000447654 A0A0U1RRA0 63 aa13.72□□□□□ -0.21
HMGA1-205ENST00000447654 H3BUA1 57 aa13.72□□□□□ -0.21
HMGA1-205ENST00000447654 KRTAP10-9P60411 292 aa13.72□□□□□ -0.21
HMGA1-205ENST00000447654 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.71□□□□□ -0.21
HMGA1-205ENST00000447654 IGKV2-29A2NJV5 120 aaPredicted RBP13.71□□□□□ -0.21
HMGA1-205ENST00000447654 B4DSR2 109 aa13.71□□□□□ -0.21
HMGA1-205ENST00000447654 NCR3O14931 201 aa13.71□□□□□ -0.21
HMGA1-205ENST00000447654 COX6A2Q02221 97 aa13.71□□□□□ -0.21
HMGA1-205ENST00000447654 LINC00337Q8N6G1 96 aa13.71□□□□□ -0.21
HMGA1-205ENST00000447654 TLN2Q9Y4G6 2542 aa13.71□□□□□ -0.22
HMGA1-205ENST00000447654 CREBBPQ92793 2442 aa13.7□□□□□ -0.22
HMGA1-205ENST00000447654 MAST4O15021 2626 aa13.7□□□□□ -0.22
HMGA1-205ENST00000447654 IGHV3-11P01762 117 aa13.7□□□□□ -0.22
HMGA1-205ENST00000447654 DGAT2L7PQ6IED9 249 aa13.7□□□□□ -0.22
HMGA1-205ENST00000447654 IGHV3OR16-12A0A075B7B8 117 aa13.69□□□□□ -0.22
HMGA1-205ENST00000447654 K7EMT4 169 aa13.69□□□□□ -0.22
HMGA1-205ENST00000447654 IGKV2-28A0A075B6P5 120 aa13.69□□□□□ -0.22
HMGA1-205ENST00000447654 IGKV2D-28P01615 120 aa13.69□□□□□ -0.22
HMGA1-205ENST00000447654 LINC00167Q96N53 147 aa13.69□□□□□ -0.22
HMGA1-205ENST00000447654 UBL5Q9BZL1 73 aa13.69□□□□□ -0.22
HMGA1-205ENST00000447654 MIR7-3HGQ8N6C7 128 aa13.68□□□□□ -0.22
HMGA1-205ENST00000447654 SND1-IT1Q9HBX3 110 aa13.68□□□□□ -0.22
HMGA1-205ENST00000447654 LECT2O14960 151 aa13.68□□□□□ -0.22
HMGA1-205ENST00000447654 ENHOQ6UWT2 76 aa13.68□□□□□ -0.22
HMGA1-205ENST00000447654 FAM19A1Q7Z5A9 133 aa13.67□□□□□ -0.22
HMGA1-205ENST00000447654 SS18Q15532 418 aa13.66□□□□□ -0.22
HMGA1-205ENST00000447654 CUBNO60494 3623 aa13.66□□□□□ -0.22
HMGA1-205ENST00000447654 AKAP9Q99996 3911 aa13.66□□□□□ -0.22
HMGA1-205ENST00000447654 IGHV4-59P01825 116 aa13.66□□□□□ -0.22
HMGA1-205ENST00000447654 IGKV3-7A0A075B6H7 116 aa13.65□□□□□ -0.22
HMGA1-205ENST00000447654 DEFB112Q30KQ8 113 aa13.65□□□□□ -0.22
HMGA1-205ENST00000447654 C10orf99Q6UWK7 81 aa13.65□□□□□ -0.22
HMGA1-205ENST00000447654 WFDC11Q8NEX6 87 aa13.65□□□□□ -0.22
HMGA1-205ENST00000447654 CFHR3Q02985 330 aa13.64□□□□□ -0.23
HMGA1-205ENST00000447654 DSCR9P59020 149 aa13.64□□□□□ -0.23
HMGA1-205ENST00000447654 CR1P17927 2039 aa13.63□□□□□ -0.23
HMGA1-205ENST00000447654 TRBV7-6A0A0J9YX20 115 aa13.63□□□□□ -0.23
HMGA1-205ENST00000447654 IGLV1-40P01703 118 aa13.63□□□□□ -0.23
HMGA1-205ENST00000447654 EDN2P20800 178 aa13.63□□□□□ -0.23
HMGA1-205ENST00000447654 SNRPD3P62318 126 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms