RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 CLEC2BQ92478 149 aa11.71□□□□□ -0.53
CLCNKA-203ENST00000439316 CITED2Q99967 270 aaPredicted RBP11.71□□□□□ -0.53
CLCNKA-203ENST00000439316 RPL36AP83881 106 aaKnown RBP11.7□□□□□ -0.54
CLCNKA-203ENST00000439316 RPL36ALQ969Q0 106 aaKnown RBP11.7□□□□□ -0.54
CLCNKA-203ENST00000439316 Q9H8V8 135 aa11.7□□□□□ -0.54
CLCNKA-203ENST00000439316 SMIM1B2RUZ4 78 aa11.7□□□□□ -0.54
CLCNKA-203ENST00000439316 NTM-AS1Q6ZSK4 140 aa11.7□□□□□ -0.54
CLCNKA-203ENST00000439316 LINC00308Q8TCZ7 52 aa11.7□□□□□ -0.54
CLCNKA-203ENST00000439316 DAZ2Q13117 558 aaKnown RBP11.69□□□□□ -0.54
CLCNKA-203ENST00000439316 DAZ4Q86SG3 579 aaKnown RBP11.69□□□□□ -0.54
CLCNKA-203ENST00000439316 DAZ3Q9NR90 486 aaKnown RBP11.69□□□□□ -0.54
CLCNKA-203ENST00000439316 TRAV8-4A0A0B4J246 113 aa11.68□□□□□ -0.54
CLCNKA-203ENST00000439316 TRAV4A0A0B4J268 109 aa11.68□□□□□ -0.54
CLCNKA-203ENST00000439316 Q6ZTI0 123 aa11.68□□□□□ -0.54
CLCNKA-203ENST00000439316 CYSRT1A8MQ03 144 aa11.68□□□□□ -0.54
CLCNKA-203ENST00000439316 TENM1Q9UKZ4 2725 aa11.67□□□□□ -0.54
CLCNKA-203ENST00000439316 ZNF625Q96I27 306 aaPredicted RBP11.67□□□□□ -0.54
CLCNKA-203ENST00000439316 ATRQ13535 2644 aa11.66□□□□□ -0.54
CLCNKA-203ENST00000439316 F5H768 121 aa11.66□□□□□ -0.54
CLCNKA-203ENST00000439316 CDC42SE2Q9NRR3 84 aa11.66□□□□□ -0.54
CLCNKA-203ENST00000439316 TRAV26-1A0A087WT03 109 aa11.65□□□□□ -0.54
CLCNKA-203ENST00000439316 TRAV13-1A0A0B4J241 112 aa11.65□□□□□ -0.54
CLCNKA-203ENST00000439316 CCL24O00175 119 aa11.65□□□□□ -0.54
CLCNKA-203ENST00000439316 SNCGO76070 127 aa11.65□□□□□ -0.54
CLCNKA-203ENST00000439316 DEFB121Q5J5C9 76 aa11.65□□□□□ -0.54
CLCNKA-203ENST00000439316 SOSTDC1Q6X4U4 206 aa11.65□□□□□ -0.54
CLCNKA-203ENST00000439316 COPS9Q8WXC6 57 aa11.65□□□□□ -0.54
CLCNKA-203ENST00000439316 GAGE12JA6NER3 117 aa11.65□□□□□ -0.55
CLCNKA-203ENST00000439316 GAGE4Q13068 117 aa11.65□□□□□ -0.55
CLCNKA-203ENST00000439316 GAGE5Q13069 117 aa11.65□□□□□ -0.55
CLCNKA-203ENST00000439316 MAST4O15021 2626 aa11.63□□□□□ -0.55
CLCNKA-203ENST00000439316 KRTAP10-3P60369 221 aa11.63□□□□□ -0.55
CLCNKA-203ENST00000439316 PRIMA1Q86XR5 153 aa11.63□□□□□ -0.55
CLCNKA-203ENST00000439316 ANAPC13Q9BS18 74 aa11.63□□□□□ -0.55
CLCNKA-203ENST00000439316 PPDPFQ9H3Y8 114 aa11.63□□□□□ -0.55
CLCNKA-203ENST00000439316 FAM240AA0A1B0GVK7 77 aa11.62□□□□□ -0.55
CLCNKA-203ENST00000439316 GIG44P09565 113 aaPredicted RBP11.62□□□□□ -0.55
CLCNKA-203ENST00000439316 HERV-K104P63124 156 aa11.62□□□□□ -0.55
CLCNKA-203ENST00000439316 GAGE2BQ13066 116 aa11.62□□□□□ -0.55
CLCNKA-203ENST00000439316 GAGE2EQ4V326 116 aa11.62□□□□□ -0.55
CLCNKA-203ENST00000439316 Q6Q795 121 aa11.62□□□□□ -0.55
CLCNKA-203ENST00000439316 SHISA2Q6UWI4 295 aa11.62□□□□□ -0.55
CLCNKA-203ENST00000439316 GAGE2DQ9UEU5 116 aa11.62□□□□□ -0.55
CLCNKA-203ENST00000439316 A0A0U1RRA0 63 aa11.61□□□□□ -0.55
CLCNKA-203ENST00000439316 COX7A2LO14548 114 aa11.61□□□□□ -0.55
CLCNKA-203ENST00000439316 MEIG1Q5JSS6 88 aa11.61□□□□□ -0.55
CLCNKA-203ENST00000439316 TMEM243Q9BU79 118 aa11.61□□□□□ -0.55
CLCNKA-203ENST00000439316 NOP10Q9NPE3 64 aaKnown RBP11.61□□□□□ -0.55
CLCNKA-203ENST00000439316 PLAC8L1A1L4L8 177 aa11.61□□□□□ -0.55
CLCNKA-203ENST00000439316 C15orf53Q8NAA6 179 aa11.61□□□□□ -0.55
CLCNKA-203ENST00000439316 MRPL23Q16540 153 aaKnown RBP11.59□□□□□ -0.55
CLCNKA-203ENST00000439316 C16orf74Q96GX8 76 aa11.59□□□□□ -0.55
CLCNKA-203ENST00000439316 VWFP04275 2813 aa11.59□□□□□ -0.55
CLCNKA-203ENST00000439316 UBE2L6O14933 153 aa11.59□□□□□ -0.55
CLCNKA-203ENST00000439316 CMC4P56277 68 aaPredicted RBP11.59□□□□□ -0.55
CLCNKA-203ENST00000439316 NHLRC4P0CG21 123 aaPredicted RBP11.58□□□□□ -0.56
CLCNKA-203ENST00000439316 TRBV6-4A0A1B0GX49 114 aa11.57□□□□□ -0.56
CLCNKA-203ENST00000439316 NDUFV3P56181 108 aaKnown RBP11.57□□□□□ -0.56
CLCNKA-203ENST00000439316 NOTCH3Q9UM47 2321 aa11.56□□□□□ -0.56
CLCNKA-203ENST00000439316 LOC100131303A0A0U1RQF7 123 aa11.56□□□□□ -0.56
CLCNKA-203ENST00000439316 GAGE7O76087 117 aa11.56□□□□□ -0.56
CLCNKA-203ENST00000439316 GAGE12FP0CL80 117 aa11.56□□□□□ -0.56
CLCNKA-203ENST00000439316 GAGE12GP0CL81 117 aa11.56□□□□□ -0.56
CLCNKA-203ENST00000439316 GAGE12IP0CL82 117 aa11.56□□□□□ -0.56
CLCNKA-203ENST00000439316 FAM110AQ9BQ89 295 aa11.56□□□□□ -0.56
CLCNKA-203ENST00000439316 OVOL2Q9BRP0 275 aa11.56□□□□□ -0.56
CLCNKA-203ENST00000439316 TRGV2A0A075B6R0 118 aa11.55□□□□□ -0.56
CLCNKA-203ENST00000439316 TRACP01848 142 aa11.55□□□□□ -0.56
CLCNKA-203ENST00000439316 WFDC10AQ9H1F0 79 aa11.55□□□□□ -0.56
CLCNKA-203ENST00000439316 C19orf73Q9NVV2 129 aa11.55□□□□□ -0.56
CLCNKA-203ENST00000439316 TTC32Q5I0X7 151 aa11.54□□□□□ -0.56
CLCNKA-203ENST00000439316 CSNK1G2-AS1Q8NCQ2 148 aa11.54□□□□□ -0.56
CLCNKA-203ENST00000439316 COX7B2Q8TF08 81 aa11.54□□□□□ -0.56
CLCNKA-203ENST00000439316 FAM222AQ5U5X8 452 aa11.53□□□□□ -0.56
CLCNKA-203ENST00000439316 IGLV1-51P01701 117 aa11.52□□□□□ -0.56
CLCNKA-203ENST00000439316 RPL35AP18077 110 aaKnown RBP11.52□□□□□ -0.56
CLCNKA-203ENST00000439316 PF4P02776 101 aa11.52□□□□□ -0.57
CLCNKA-203ENST00000439316 GAGE6Q13070 117 aa11.52□□□□□ -0.57
CLCNKA-203ENST00000439316 TRGV4A0A0C4DH28 118 aa11.51□□□□□ -0.57
CLCNKA-203ENST00000439316 TRAV13-2A0A0B4J235 113 aa11.5□□□□□ -0.57
CLCNKA-203ENST00000439316 FAM218AQ96MZ4 157 aa11.5□□□□□ -0.57
CLCNKA-203ENST00000439316 TRRAPQ9Y4A5 3859 aa11.5□□□□□ -0.57
CLCNKA-203ENST00000439316 ACYP1P07311 99 aa11.5□□□□□ -0.57
CLCNKA-203ENST00000439316 FHL2Q14192 279 aa11.5□□□□□ -0.57
CLCNKA-203ENST00000439316 IGLV4-60A0A075B6I1 120 aa11.49□□□□□ -0.57
CLCNKA-203ENST00000439316 TRBV6-8A0A0A6YYG3 113 aa11.49□□□□□ -0.57
CLCNKA-203ENST00000439316 RPL28P46779 137 aaKnown RBP11.49□□□□□ -0.57
CLCNKA-203ENST00000439316 MIR7-3HGQ8N6C7 128 aa11.49□□□□□ -0.57
CLCNKA-203ENST00000439316 FBN1P35555 2871 aaKnown RBP11.49□□□□□ -0.57
CLCNKA-203ENST00000439316 TRBV7-7A0A0K0K1E9 115 aa11.48□□□□□ -0.57
CLCNKA-203ENST00000439316 CRPP02741 224 aa11.48□□□□□ -0.57
CLCNKA-203ENST00000439316 C22orf24Q9Y442 160 aa11.48□□□□□ -0.57
CLCNKA-203ENST00000439316 IGKV2-28A0A075B6P5 120 aa11.48□□□□□ -0.57
CLCNKA-203ENST00000439316 IGHV3OR16-9A0A0B4J2B5 98 aa11.48□□□□□ -0.57
CLCNKA-203ENST00000439316 IGKV2D-28P01615 120 aa11.48□□□□□ -0.57
CLCNKA-203ENST00000439316 STAB1Q9NY15 2570 aa11.47□□□□□ -0.57
CLCNKA-203ENST00000439316 BAALC-AS2P0C853 105 aa11.47□□□□□ -0.57
CLCNKA-203ENST00000439316 LINC00337Q8N6G1 96 aa11.47□□□□□ -0.57
CLCNKA-203ENST00000439316 LINC00482Q8N8I6 264 aa11.47□□□□□ -0.57
CLCNKA-203ENST00000439316 TOMM7Q9P0U1 55 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 140 ms