RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 LAMA4Q16363 1823 aa1.91□□□□□ -2.1
SF3B1-205ENST00000424674 MED13Q9UHV7 2174 aa1.91□□□□□ -2.1
SF3B1-205ENST00000424674 PDCD11Q14690 1871 aaKnown RBP1.9□□□□□ -2.1
SF3B1-205ENST00000424674 FANCD2Q9BXW9 1451 aa1.9□□□□□ -2.11
SF3B1-205ENST00000424674 CR1P17927 2039 aa1.9□□□□□ -2.11
SF3B1-205ENST00000424674 A0A087WTM6 91 aa1.9□□□□□ -2.11
SF3B1-205ENST00000424674 H3BVH4 76 aa1.9□□□□□ -2.11
SF3B1-205ENST00000424674 ZNF137PP52743 207 aa1.9□□□□□ -2.11
SF3B1-205ENST00000424674 LINC00304Q8N9R0 145 aa1.9□□□□□ -2.11
SF3B1-205ENST00000424674 LINC00208Q96KT6 92 aa1.9□□□□□ -2.11
SF3B1-205ENST00000424674 SPRR4Q96PI1 79 aa1.9□□□□□ -2.11
SF3B1-205ENST00000424674 GNG13Q9P2W3 67 aa1.9□□□□□ -2.11
SF3B1-205ENST00000424674 HILPDAQ9Y5L2 63 aa1.9□□□□□ -2.11
SF3B1-205ENST00000424674 RP1P56715 2156 aa1.9□□□□□ -2.11
SF3B1-205ENST00000424674 GBF1Q92538 1859 aa1.89□□□□□ -2.11
SF3B1-205ENST00000424674 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.89□□□□□ -2.11
SF3B1-205ENST00000424674 A0A1B0GUT8 65 aa1.89□□□□□ -2.11
SF3B1-205ENST00000424674 KRTAP10-1P60331 282 aa1.89□□□□□ -2.11
SF3B1-205ENST00000424674 MED12Q93074 2177 aa1.89□□□□□ -2.11
SF3B1-205ENST00000424674 ITSN1Q15811 1721 aa1.88□□□□□ -2.11
SF3B1-205ENST00000424674 COL4A4P53420 1690 aaPredicted RBP1.88□□□□□ -2.11
SF3B1-205ENST00000424674 A0A087WVE0 104 aa1.88□□□□□ -2.11
SF3B1-205ENST00000424674 A0A0D9SFI3 127 aa1.88□□□□□ -2.11
SF3B1-205ENST00000424674 TRBV7-4A0A0J9YYF1 115 aa1.88□□□□□ -2.11
SF3B1-205ENST00000424674 CAV3P56539 151 aa1.88□□□□□ -2.11
SF3B1-205ENST00000424674 ATXN8Q156A1 80 aa1.88□□□□□ -2.11
SF3B1-205ENST00000424674 Q6ZRN7 208 aaPredicted RBP1.88□□□□□ -2.11
SF3B1-205ENST00000424674 CD163L1Q9NR16 1453 aa1.88□□□□□ -2.11
SF3B1-205ENST00000424674 ABCA6Q8N139 1617 aa1.88□□□□□ -2.11
SF3B1-205ENST00000424674 RAPGEF6Q8TEU7 1601 aa1.88□□□□□ -2.11
SF3B1-205ENST00000424674 ARFGEF1Q9Y6D6 1849 aa1.87□□□□□ -2.11
SF3B1-205ENST00000424674 TRGV2A0A075B6R0 118 aa1.87□□□□□ -2.11
SF3B1-205ENST00000424674 NDUFB1O75438 58 aa1.87□□□□□ -2.11
SF3B1-205ENST00000424674 LCE1CQ5T751 118 aa1.87□□□□□ -2.11
SF3B1-205ENST00000424674 LCE1BQ5T7P3 118 aa1.87□□□□□ -2.11
SF3B1-205ENST00000424674 Q6ZQY7 126 aa1.87□□□□□ -2.11
SF3B1-205ENST00000424674 FDCSPQ8NFU4 85 aa1.87□□□□□ -2.11
SF3B1-205ENST00000424674 PLAC8Q9NZF1 115 aa1.87□□□□□ -2.11
SF3B1-205ENST00000424674 BAZ2BQ9UIF8 2168 aaKnown RBP1.87□□□□□ -2.11
SF3B1-205ENST00000424674 ATP7BP35670 1465 aa1.87□□□□□ -2.11
SF3B1-205ENST00000424674 RALGAPBQ86X10 1494 aa1.87□□□□□ -2.11
SF3B1-205ENST00000424674 TRGV1A0A0A0MS02 117 aa1.86□□□□□ -2.11
SF3B1-205ENST00000424674 H0Y9P7 68 aa1.86□□□□□ -2.11
SF3B1-205ENST00000424674 IGKV4-1P06312 121 aa1.86□□□□□ -2.11
SF3B1-205ENST00000424674 PI4KAP42356 2102 aa1.86□□□□□ -2.11
SF3B1-205ENST00000424674 SPATA8Q6RVD6 105 aa1.86□□□□□ -2.11
SF3B1-205ENST00000424674 TMEM263Q8WUH6 116 aaKnown RBP1.86□□□□□ -2.11
SF3B1-205ENST00000424674 Q96NJ1 140 aa1.86□□□□□ -2.11
SF3B1-205ENST00000424674 RNF17Q9BXT8 1623 aaKnown RBP1.86□□□□□ -2.11
SF3B1-205ENST00000424674 SHROOM3Q8TF72 1996 aa1.86□□□□□ -2.11
SF3B1-205ENST00000424674 DOCK11Q5JSL3 2073 aa1.86□□□□□ -2.11
SF3B1-205ENST00000424674 CDC42BPGQ6DT37 1551 aa1.85□□□□□ -2.11
SF3B1-205ENST00000424674 LOC285556D6RIA3 1793 aa1.85□□□□□ -2.11
SF3B1-205ENST00000424674 FXYD6-FXYD2A0A087WZ82 144 aa1.85□□□□□ -2.11
SF3B1-205ENST00000424674 TRAV1-2A0A0B4J238 106 aa1.85□□□□□ -2.11
SF3B1-205ENST00000424674 HCRTO43612 131 aa1.85□□□□□ -2.11
SF3B1-205ENST00000424674 PRB2P02812 416 aaPredicted RBP1.85□□□□□ -2.11
SF3B1-205ENST00000424674 HMGA1P17096 107 aaKnown RBP1.85□□□□□ -2.11
SF3B1-205ENST00000424674 DEFB107AQ8IZN7 70 aa1.85□□□□□ -2.11
SF3B1-205ENST00000424674 SCN7AQ01118 1682 aa1.85□□□□□ -2.11
SF3B1-205ENST00000424674 XRN1Q8IZH2 1706 aaKnown RBP1.85□□□□□ -2.11
SF3B1-205ENST00000424674 KIAA0100Q14667 2235 aaKnown RBP1.85□□□□□ -2.11
SF3B1-205ENST00000424674 TNRC6BQ9UPQ9 1833 aaKnown RBP1.84□□□□□ -2.11
SF3B1-205ENST00000424674 ANKRD50Q9ULJ7 1429 aa1.84□□□□□ -2.11
SF3B1-205ENST00000424674 SHPRHQ149N8 1683 aa1.84□□□□□ -2.11
SF3B1-205ENST00000424674 SNRPGP15A8MWD9 76 aa1.84□□□□□ -2.11
SF3B1-205ENST00000424674 ACYP2P14621 99 aa1.84□□□□□ -2.11
SF3B1-205ENST00000424674 C10orf99Q6UWK7 81 aa1.84□□□□□ -2.11
SF3B1-205ENST00000424674 PP632Q6XCG6 107 aa1.84□□□□□ -2.11
SF3B1-205ENST00000424674 CCL19Q99731 98 aa1.84□□□□□ -2.11
SF3B1-205ENST00000424674 SIPA1L3O60292 1781 aaPredicted RBP1.84□□□□□ -2.12
SF3B1-205ENST00000424674 MAP2P11137 1827 aaKnown RBP1.84□□□□□ -2.12
SF3B1-205ENST00000424674 COL5A1P20908 1838 aaPredicted RBP1.84□□□□□ -2.12
SF3B1-205ENST00000424674 ESPL1Q14674 2120 aa1.84□□□□□ -2.12
SF3B1-205ENST00000424674 PLCH1Q4KWH8 1693 aa1.83□□□□□ -2.12
SF3B1-205ENST00000424674 SYCP2Q9BX26 1530 aa1.83□□□□□ -2.12
SF3B1-205ENST00000424674 FAM103A1Q9BTL3 118 aaKnown RBP1.83□□□□□ -2.12
SF3B1-205ENST00000424674 CEP170BQ9Y4F5 1589 aaPredicted RBP1.83□□□□□ -2.12
SF3B1-205ENST00000424674 PIK3C2BO00750 1634 aa1.83□□□□□ -2.12
SF3B1-205ENST00000424674 USP32Q8NFA0 1604 aa1.83□□□□□ -2.12
SF3B1-205ENST00000424674 KIF1AQ12756 1690 aa1.83□□□□□ -2.12
SF3B1-205ENST00000424674 PREX1Q8TCU6 1659 aa1.83□□□□□ -2.12
SF3B1-205ENST00000424674 CRYBG1Q9Y4K1 1723 aa1.83□□□□□ -2.12
SF3B1-205ENST00000424674 PRXQ9BXM0 1461 aa1.82□□□□□ -2.12
SF3B1-205ENST00000424674 ARFGEF3Q5TH69 2177 aa1.82□□□□□ -2.12
SF3B1-205ENST00000424674 SPAG17Q6Q759 2223 aa1.82□□□□□ -2.12
SF3B1-205ENST00000424674 UNC13CQ8NB66 2214 aa1.82□□□□□ -2.12
SF3B1-205ENST00000424674 S100A3P33764 101 aa1.82□□□□□ -2.12
SF3B1-205ENST00000424674 LINC00472Q9H8W2 130 aa1.82□□□□□ -2.12
SF3B1-205ENST00000424674 GPR179Q6PRD1 2367 aa1.82□□□□□ -2.12
SF3B1-205ENST00000424674 SPTBP11277 2137 aa1.82□□□□□ -2.12
SF3B1-205ENST00000424674 ALPK2Q86TB3 2170 aa1.82□□□□□ -2.12
SF3B1-205ENST00000424674 ZMYM4Q5VZL5 1548 aa1.81□□□□□ -2.12
SF3B1-205ENST00000424674 PCDH15Q96QU1 1955 aa1.81□□□□□ -2.12
SF3B1-205ENST00000424674 GLI2P10070 1586 aa1.81□□□□□ -2.12
SF3B1-205ENST00000424674 MAST1Q9Y2H9 1570 aa1.81□□□□□ -2.12
SF3B1-205ENST00000424674 PAPPAQ13219 1627 aa1.81□□□□□ -2.12
SF3B1-205ENST00000424674 ALKQ9UM73 1620 aa1.81□□□□□ -2.12
SF3B1-205ENST00000424674 NUP188Q5SRE5 1749 aa1.81□□□□□ -2.12
SF3B1-205ENST00000424674 IFI6P09912 130 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms