RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 C19orf54Q5BKX5 351 aa7.16□□□□□ -1.26
USP54-205ENST00000424265 Q9UF83 564 aa7.16□□□□□ -1.26
USP54-205ENST00000424265 PIK3CD-AS1Q5SR53 167 aa7.15□□□□□ -1.26
USP54-205ENST00000424265 SPTBN5Q9NRC6 3674 aaKnown RBP7.15□□□□□ -1.26
USP54-205ENST00000424265 IGHV3-30-3P0DP02 117 aa7.15□□□□□ -1.26
USP54-205ENST00000424265 ORMDL1Q9P0S3 153 aa7.15□□□□□ -1.26
USP54-205ENST00000424265 NDUFS5O43920 106 aa7.15□□□□□ -1.26
USP54-205ENST00000424265 MED14OSP0DP75 135 aa7.15□□□□□ -1.26
USP54-205ENST00000424265 COL6A3P12111 3177 aa7.15□□□□□ -1.27
USP54-205ENST00000424265 CNFNQ9BYD5 112 aa7.15□□□□□ -1.27
USP54-205ENST00000424265 ZNF876PQ49A33 203 aa7.14□□□□□ -1.27
USP54-205ENST00000424265 XIRP2A4UGR9 3374 aa7.14□□□□□ -1.27
USP54-205ENST00000424265 TRAV13-2A0A0B4J235 113 aa7.14□□□□□ -1.27
USP54-205ENST00000424265 IGKV3D-20A0A0C4DH25 116 aa7.14□□□□□ -1.27
USP54-205ENST00000424265 A0A0J9YXV3 536 aa7.14□□□□□ -1.27
USP54-205ENST00000424265 ESM1Q9NQ30 184 aa7.14□□□□□ -1.27
USP54-205ENST00000424265 USP9YO00507 2555 aaPredicted RBP7.14□□□□□ -1.27
USP54-205ENST00000424265 MAP6D1Q9H9H5 199 aa7.14□□□□□ -1.27
USP54-205ENST00000424265 SMAD5-AS1Q9Y6J3 95 aa7.14□□□□□ -1.27
USP54-205ENST00000424265 TRGV4A0A0C4DH28 118 aa7.14□□□□□ -1.27
USP54-205ENST00000424265 C10orf99Q6UWK7 81 aa7.14□□□□□ -1.27
USP54-205ENST00000424265 RPL28P46779 137 aaKnown RBP7.14□□□□□ -1.27
USP54-205ENST00000424265 ADAMTSL4-AS1Q5T5F5 129 aa7.14□□□□□ -1.27
USP54-205ENST00000424265 C16orf74Q96GX8 76 aa7.13□□□□□ -1.27
USP54-205ENST00000424265 RBM12B-AS1Q9P1G2 102 aa7.13□□□□□ -1.27
USP54-205ENST00000424265 A0A087WZ39 114 aa7.13□□□□□ -1.27
USP54-205ENST00000424265 C1orf158Q8N1D5 194 aa7.13□□□□□ -1.27
USP54-205ENST00000424265 TRBV27A0A0K0K1C4 114 aa7.13□□□□□ -1.27
USP54-205ENST00000424265 TRGV1A0A0A0MS02 117 aa7.12□□□□□ -1.27
USP54-205ENST00000424265 KTN1-AS1Q86SY8 53 aa7.12□□□□□ -1.27
USP54-205ENST00000424265 NCR3O14931 201 aa7.12□□□□□ -1.27
USP54-205ENST00000424265 RPL36AP83881 106 aaKnown RBP7.12□□□□□ -1.27
USP54-205ENST00000424265 RPL36ALQ969Q0 106 aaKnown RBP7.12□□□□□ -1.27
USP54-205ENST00000424265 USP9XQ93008 2570 aaPredicted RBP7.12□□□□□ -1.27
USP54-205ENST00000424265 PSPHP1O15172 72 aa7.11□□□□□ -1.27
USP54-205ENST00000424265 F8W735 103 aaPredicted RBP7.11□□□□□ -1.27
USP54-205ENST00000424265 TMEM256-PLSCR3K7ERE1 68 aa7.11□□□□□ -1.27
USP54-205ENST00000424265 Q6ZRU5 148 aa7.11□□□□□ -1.27
USP54-205ENST00000424265 BCE1O60756 84 aa7.11□□□□□ -1.27
USP54-205ENST00000424265 JMJD7-PLA2G4BH0Y9G9 81 aa7.1□□□□□ -1.27
USP54-205ENST00000424265 H0YGX0 51 aa7.1□□□□□ -1.27
USP54-205ENST00000424265 BEAN1Q3B7T3 259 aa7.1□□□□□ -1.27
USP54-205ENST00000424265 EIF4EBP3O60516 100 aaPredicted RBP7.1□□□□□ -1.27
USP54-205ENST00000424265 NACAE9PAV3 2078 aa7.1□□□□□ -1.27
USP54-205ENST00000424265 UBE2AP49459 152 aa7.09□□□□□ -1.27
USP54-205ENST00000424265 KRTAP1-1Q07627 177 aa7.09□□□□□ -1.27
USP54-205ENST00000424265 IGLV1-51P01701 117 aa7.09□□□□□ -1.27
USP54-205ENST00000424265 KLKP1Q107X0 134 aa7.09□□□□□ -1.27
USP54-205ENST00000424265 IGSF10Q6WRI0 2623 aa7.09□□□□□ -1.27
USP54-205ENST00000424265 OPRPNQ99935 248 aaPredicted RBP7.09□□□□□ -1.28
USP54-205ENST00000424265 LECT2O14960 151 aa7.08□□□□□ -1.28
USP54-205ENST00000424265 HIST2H2BDQ6DRA6 164 aa7.08□□□□□ -1.28
USP54-205ENST00000424265 LRCOL1A6NCL2 159 aa7.08□□□□□ -1.28
USP54-205ENST00000424265 LYPD5Q6UWN5 251 aa7.08□□□□□ -1.28
USP54-205ENST00000424265 C11orf45Q8TAV5 145 aa7.08□□□□□ -1.28
USP54-205ENST00000424265 ABCA12Q86UK0 2595 aa7.08□□□□□ -1.28
USP54-205ENST00000424265 IGIPA6NJ69 53 aa7.07□□□□□ -1.28
USP54-205ENST00000424265 TRBV10-3A0A0K0K1G6 114 aa7.07□□□□□ -1.28
USP54-205ENST00000424265 PRAC2D3DTV9 90 aa7.07□□□□□ -1.28
USP54-205ENST00000424265 A0A087WWL8 130 aa7.07□□□□□ -1.28
USP54-205ENST00000424265 LINC00308Q8TCZ7 52 aa7.07□□□□□ -1.28
USP54-205ENST00000424265 SPART-AS1P0CW21 52 aa7.06□□□□□ -1.28
USP54-205ENST00000424265 Q9H8V8 135 aa7.06□□□□□ -1.28
USP54-205ENST00000424265 HTN3P15516 51 aa7.06□□□□□ -1.28
USP54-205ENST00000424265 C18orf65Q6ZTR6 163 aa7.06□□□□□ -1.28
USP54-205ENST00000424265 TET2Q6N021 2002 aaPredicted RBP7.06□□□□□ -1.28
USP54-205ENST00000424265 PRRC2CQ9Y520 2896 aaKnown RBP7.06□□□□□ -1.28
USP54-205ENST00000424265 AMELXQ99217 191 aa7.06□□□□□ -1.28
USP54-205ENST00000424265 PLXNB1O43157 2135 aa7.06□□□□□ -1.28
USP54-205ENST00000424265 SONP18583 2426 aaKnown RBP7.06□□□□□ -1.28
USP54-205ENST00000424265 EPM2AB3EWF7 344 aa7.05□□□□□ -1.28
USP54-205ENST00000424265 PRYO14603 147 aa7.05□□□□□ -1.28
USP54-205ENST00000424265 A0A0C4DFX4 3053 aa7.05□□□□□ -1.28
USP54-205ENST00000424265 CHKB-CPT1BH3BT56 60 aa7.04□□□□□ -1.28
USP54-205ENST00000424265 SUMO4Q6EEV6 95 aa7.04□□□□□ -1.28
USP54-205ENST00000424265 TSHBP01222 138 aa7.04□□□□□ -1.28
USP54-205ENST00000424265 NREPQ16612 68 aa7.04□□□□□ -1.28
USP54-205ENST00000424265 COX8CQ7Z4L0 72 aa7.04□□□□□ -1.28
USP54-205ENST00000424265 POLQO75417 2590 aa7.04□□□□□ -1.28
USP54-205ENST00000424265 HELZ2Q9BYK8 2649 aaKnown RBP7.04□□□□□ -1.28
USP54-205ENST00000424265 DEFB130BP0DP73 79 aa7.04□□□□□ -1.28
USP54-205ENST00000424265 DEFB130AP0DP74 79 aa7.04□□□□□ -1.28
USP54-205ENST00000424265 RNASE13Q5GAN3 156 aaKnown RBP7.04□□□□□ -1.28
USP54-205ENST00000424265 TMEM254Q8TBM7 123 aa7.04□□□□□ -1.28
USP54-205ENST00000424265 ZNF73O43830 326 aaPredicted RBP7.03□□□□□ -1.28
USP54-205ENST00000424265 C6orf223Q8N319 242 aa7.03□□□□□ -1.28
USP54-205ENST00000424265 IGHV4-4A0A075B6R2 117 aa7.03□□□□□ -1.28
USP54-205ENST00000424265 LINC00158P58513 81 aa7.02□□□□□ -1.29
USP54-205ENST00000424265 KRTAP24-1Q3LI83 254 aa7.02□□□□□ -1.29
USP54-205ENST00000424265 MGAQ8IWI9 3026 aa7.02□□□□□ -1.29
USP54-205ENST00000424265 KLLNB2CW77 178 aa7.02□□□□□ -1.29
USP54-205ENST00000424265 Q6ZVQ6 151 aa7.02□□□□□ -1.29
USP54-205ENST00000424265 MIR7-3HGQ8N6C7 128 aa7.02□□□□□ -1.29
USP54-205ENST00000424265 PRB2P02812 416 aaPredicted RBP7.01□□□□□ -1.29
USP54-205ENST00000424265 ZFAND2AQ8N6M9 145 aa7.01□□□□□ -1.29
USP54-205ENST00000424265 SLPIP03973 132 aa7.01□□□□□ -1.29
USP54-205ENST00000424265 TLN2Q9Y4G6 2542 aa7.01□□□□□ -1.29
USP54-205ENST00000424265 GNRH2O43555 120 aa7.01□□□□□ -1.29
USP54-205ENST00000424265 CD164L2Q6UWJ8 174 aa7.01□□□□□ -1.29
USP54-205ENST00000424265 NOP10Q9NPE3 64 aaKnown RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms