RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 PSMB2P49721 201 aa5.89□□□□□ -1.47
USP54-203ENST00000418501 MUC7Q8TAX7 377 aa5.89□□□□□ -1.47
USP54-203ENST00000418501 MRAPQ8TCY5 172 aa5.89□□□□□ -1.47
USP54-203ENST00000418501 KPRPQ5T749 579 aaPredicted RBP5.89□□□□□ -1.47
USP54-203ENST00000418501 NTM-AS1Q6ZSK4 140 aa5.89□□□□□ -1.47
USP54-203ENST00000418501 A0A096LPF7 62 aa5.89□□□□□ -1.47
USP54-203ENST00000418501 CDKN2A-AS1Q9UH64 79 aa5.89□□□□□ -1.47
USP54-203ENST00000418501 LINC00242Q5T6M2 205 aa5.88□□□□□ -1.47
USP54-203ENST00000418501 C10orf126Q8N4M7 172 aa5.88□□□□□ -1.47
USP54-203ENST00000418501 ITPR2Q14571 2701 aa5.88□□□□□ -1.47
USP54-203ENST00000418501 C12orf74Q32Q52 190 aa5.88□□□□□ -1.47
USP54-203ENST00000418501 A0A0J9YWU9 116 aa5.88□□□□□ -1.47
USP54-203ENST00000418501 REG3AQ06141 175 aa5.88□□□□□ -1.47
USP54-203ENST00000418501 CD164L2Q6UWJ8 174 aa5.88□□□□□ -1.47
USP54-203ENST00000418501 Q9H8V8 135 aa5.88□□□□□ -1.47
USP54-203ENST00000418501 ERG28Q9UKR5 140 aa5.88□□□□□ -1.47
USP54-203ENST00000418501 LINC00959A0A1B0GUT2 108 aa5.88□□□□□ -1.47
USP54-203ENST00000418501 KLK5Q9Y337 293 aaPredicted RBP5.88□□□□□ -1.47
USP54-203ENST00000418501 K7EP34 96 aa5.87□□□□□ -1.47
USP54-203ENST00000418501 MIAQ16674 131 aa5.87□□□□□ -1.47
USP54-203ENST00000418501 J3QR89 54 aa5.87□□□□□ -1.47
USP54-203ENST00000418501 LINC00158P58513 81 aa5.87□□□□□ -1.47
USP54-203ENST00000418501 MAPKAPK5-AS1Q8N8E1 139 aa5.87□□□□□ -1.47
USP54-203ENST00000418501 SPANXDQ9BXN6 97 aa5.87□□□□□ -1.47
USP54-203ENST00000418501 SPANXCQ9NY87 97 aa5.87□□□□□ -1.47
USP54-203ENST00000418501 H3BUT2 72 aa5.87□□□□□ -1.47
USP54-203ENST00000418501 CELA1Q9UNI1 258 aa5.87□□□□□ -1.47
USP54-203ENST00000418501 JMJD1CQ15652 2540 aa5.86□□□□□ -1.47
USP54-203ENST00000418501 XCL1P47992 114 aa5.86□□□□□ -1.47
USP54-203ENST00000418501 SPATA3Q8NHX4 192 aa5.86□□□□□ -1.47
USP54-203ENST00000418501 CELSR2Q9HCU4 2923 aa5.86□□□□□ -1.47
USP54-203ENST00000418501 A0A087WZ39 114 aa5.86□□□□□ -1.47
USP54-203ENST00000418501 F8WDY8 70 aa5.86□□□□□ -1.47
USP54-203ENST00000418501 SPCS1Q9Y6A9 102 aa5.86□□□□□ -1.47
USP54-203ENST00000418501 UBE2DNLQ8IWF7 75 aa5.86□□□□□ -1.47
USP54-203ENST00000418501 PRO1854Q9UHT4 67 aa5.86□□□□□ -1.47
USP54-203ENST00000418501 SETD2Q9BYW2 2564 aaPredicted RBP5.86□□□□□ -1.47
USP54-203ENST00000418501 TRBV20-1A0A075B6N2 111 aa5.85□□□□□ -1.47
USP54-203ENST00000418501 IGLV5-39A0A0G2JS06 123 aa5.85□□□□□ -1.47
USP54-203ENST00000418501 C1orf43Q9BWL3 253 aa5.85□□□□□ -1.47
USP54-203ENST00000418501 FLNBO75369 2602 aaKnown RBP5.85□□□□□ -1.47
USP54-203ENST00000418501 NOTCH3Q9UM47 2321 aa5.85□□□□□ -1.47
USP54-203ENST00000418501 TACC2O95359 2948 aa5.85□□□□□ -1.47
USP54-203ENST00000418501 IBA57-AS1B1ANH7 110 aa5.85□□□□□ -1.47
USP54-203ENST00000418501 LINC00269Q8N2A0 174 aa5.85□□□□□ -1.47
USP54-203ENST00000418501 PKIGQ9Y2B9 76 aa5.85□□□□□ -1.47
USP54-203ENST00000418501 A0A0B4J2C4 111 aa5.85□□□□□ -1.47
USP54-203ENST00000418501 CHCHD10Q8WYQ3 142 aaPredicted RBP5.85□□□□□ -1.47
USP54-203ENST00000418501 RETNQ9HD89 108 aa5.85□□□□□ -1.47
USP54-203ENST00000418501 TRAV8-3A0A0A6YYJ7 113 aa5.85□□□□□ -1.47
USP54-203ENST00000418501 LYPD5Q6UWN5 251 aa5.85□□□□□ -1.47
USP54-203ENST00000418501 TM2D3Q9BRN9 247 aa5.85□□□□□ -1.47
USP54-203ENST00000418501 TTTY13Q9BZ97 58 aa5.85□□□□□ -1.47
USP54-203ENST00000418501 TRAV13-2A0A0B4J235 113 aa5.84□□□□□ -1.47
USP54-203ENST00000418501 LOC107984156A0A0G2JMH3 177 aa5.84□□□□□ -1.47
USP54-203ENST00000418501 A0A1B0GV72 72 aa5.84□□□□□ -1.47
USP54-203ENST00000418501 ZNF561-AS1K7EIQ3 104 aa5.84□□□□□ -1.47
USP54-203ENST00000418501 Q6ZTC4 211 aa5.84□□□□□ -1.47
USP54-203ENST00000418501 C5orf38Q86SI9 138 aa5.84□□□□□ -1.47
USP54-203ENST00000418501 ARL17AQ8IVW1 177 aa5.84□□□□□ -1.47
USP54-203ENST00000418501 Q8IZM0 81 aa5.84□□□□□ -1.47
USP54-203ENST00000418501 SMIM1B2RUZ4 78 aa5.84□□□□□ -1.47
USP54-203ENST00000418501 UBE2WQ96B02 151 aa5.84□□□□□ -1.47
USP54-203ENST00000418501 PPDPFQ9H3Y8 114 aa5.84□□□□□ -1.47
USP54-203ENST00000418501 FXYD2P54710 66 aa5.84□□□□□ -1.47
USP54-203ENST00000418501 KLK12Q9UKR0 248 aa5.84□□□□□ -1.47
USP54-203ENST00000418501 A0A1W2PPM0 123 aa5.83□□□□□ -1.48
USP54-203ENST00000418501 NANOS2P60321 138 aaKnown RBP5.83□□□□□ -1.48
USP54-203ENST00000418501 PGPEP1Q9NXJ5 209 aa5.83□□□□□ -1.48
USP54-203ENST00000418501 Q9UF83 564 aa5.83□□□□□ -1.48
USP54-203ENST00000418501 COX17Q14061 63 aa5.83□□□□□ -1.48
USP54-203ENST00000418501 MUSTN1Q8IVN3 82 aa5.83□□□□□ -1.48
USP54-203ENST00000418501 IGLV4-60A0A075B6I1 120 aa5.83□□□□□ -1.48
USP54-203ENST00000418501 B9D2Q9BPU9 175 aa5.83□□□□□ -1.48
USP54-203ENST00000418501 IGHV3-30P01768 117 aa5.82□□□□□ -1.48
USP54-203ENST00000418501 IGHV3-30-5P0DP03 117 aa5.82□□□□□ -1.48
USP54-203ENST00000418501 SIGMAR1Q99720 223 aa5.82□□□□□ -1.48
USP54-203ENST00000418501 NSD1Q96L73 2696 aaPredicted RBP5.82□□□□□ -1.48
USP54-203ENST00000418501 K7EIL1 84 aa5.82□□□□□ -1.48
USP54-203ENST00000418501 IGHV3-33P01772 117 aa5.82□□□□□ -1.48
USP54-203ENST00000418501 GAGE12HA6NDE8 117 aa5.82□□□□□ -1.48
USP54-203ENST00000418501 IGLL5B9A064 214 aa5.82□□□□□ -1.48
USP54-203ENST00000418501 NUPR2A6NF83 97 aa5.81□□□□□ -1.48
USP54-203ENST00000418501 TSPAN13O95857 204 aa5.81□□□□□ -1.48
USP54-203ENST00000418501 ZANQ9Y493 2812 aa5.81□□□□□ -1.48
USP54-203ENST00000418501 IGHV3OR16-9A0A0B4J2B5 98 aa5.81□□□□□ -1.48
USP54-203ENST00000418501 A4D1N5 150 aa5.81□□□□□ -1.48
USP54-203ENST00000418501 GHRHP01286 108 aa5.81□□□□□ -1.48
USP54-203ENST00000418501 CFC1BP0CG36 223 aa5.81□□□□□ -1.48
USP54-203ENST00000418501 CFC1P0CG37 223 aa5.81□□□□□ -1.48
USP54-203ENST00000418501 CLPSL2Q6UWE3 100 aa5.81□□□□□ -1.48
USP54-203ENST00000418501 SPAG11BQ08648 103 aa5.81□□□□□ -1.48
USP54-203ENST00000418501 A0A1B0GWB2 263 aa5.81□□□□□ -1.48
USP54-203ENST00000418501 COX6A2Q02221 97 aa5.81□□□□□ -1.48
USP54-203ENST00000418501 LINC01556Q5JQF7 62 aa5.81□□□□□ -1.48
USP54-203ENST00000418501 CRYBG3Q68DQ2 2970 aa5.8□□□□□ -1.48
USP54-203ENST00000418501 TSPEAR-AS2P59090 65 aa5.8□□□□□ -1.48
USP54-203ENST00000418501 ATXN8Q156A1 80 aa5.8□□□□□ -1.48
USP54-203ENST00000418501 MAP1AP78559 2803 aaPredicted RBP5.8□□□□□ -1.48
USP54-203ENST00000418501 TTC32Q5I0X7 151 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms