RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 SPANXA1Q9NS26 97 aa11.57□□□□□ -0.56
VCP-202ENST00000417448 RPL37AP61513 92 aaKnown RBP11.56□□□□□ -0.56
VCP-202ENST00000417448 SMAGPQ0VAQ4 97 aa11.56□□□□□ -0.56
VCP-202ENST00000417448 IGLV4-3A0A075B6K6 122 aa11.55□□□□□ -0.56
VCP-202ENST00000417448 HIGD2BQ4VC39 106 aa11.55□□□□□ -0.56
VCP-202ENST00000417448 C15orf56Q8N910 161 aa11.55□□□□□ -0.56
VCP-202ENST00000417448 C18orf32Q8TCD1 76 aa11.55□□□□□ -0.56
VCP-202ENST00000417448 URB1-AS1Q96HZ7 61 aa11.55□□□□□ -0.56
VCP-202ENST00000417448 CYSLTR1Q9Y271 337 aa11.55□□□□□ -0.56
VCP-202ENST00000417448 hDV102S1A0JD36 115 aa11.54□□□□□ -0.56
VCP-202ENST00000417448 FA2HQ7L5A8 372 aa11.54□□□□□ -0.56
VCP-202ENST00000417448 MRPS36P82909 103 aaKnown RBP11.53□□□□□ -0.56
VCP-202ENST00000417448 LINC00526Q96FQ7 95 aa11.53□□□□□ -0.56
VCP-202ENST00000417448 IFITM10A6NMD0 228 aa11.52□□□□□ -0.57
VCP-202ENST00000417448 SLPIP03973 132 aa11.52□□□□□ -0.57
VCP-202ENST00000417448 C14orf177Q52M58 125 aa11.52□□□□□ -0.57
VCP-202ENST00000417448 C5orf38Q86SI9 138 aa11.52□□□□□ -0.57
VCP-202ENST00000417448 PYGO1Q9Y3Y4 419 aa11.52□□□□□ -0.57
VCP-202ENST00000417448 IGIPA6NJ69 53 aa11.51□□□□□ -0.57
VCP-202ENST00000417448 COLCA2A8K830 154 aa11.51□□□□□ -0.57
VCP-202ENST00000417448 C1orf196B1AJZ1 125 aa11.51□□□□□ -0.57
VCP-202ENST00000417448 PMCHL1Q16048 86 aa11.51□□□□□ -0.57
VCP-202ENST00000417448 CD164L2Q6UWJ8 174 aa11.51□□□□□ -0.57
VCP-202ENST00000417448 TOMM6Q96B49 74 aa11.51□□□□□ -0.57
VCP-202ENST00000417448 TMEM141Q96I45 108 aa11.51□□□□□ -0.57
VCP-202ENST00000417448 LINC01546A6NGU7 62 aa11.5□□□□□ -0.57
VCP-202ENST00000417448 K7EMI3 77 aa11.5□□□□□ -0.57
VCP-202ENST00000417448 TRGC2P03986 189 aa11.5□□□□□ -0.57
VCP-202ENST00000417448 LINC00173Q6ZV60 143 aa11.5□□□□□ -0.57
VCP-202ENST00000417448 COX6A2Q02221 97 aa11.49□□□□□ -0.57
VCP-202ENST00000417448 SCGB3A1Q96QR1 104 aa11.49□□□□□ -0.57
VCP-202ENST00000417448 LINC00614P0C842 121 aa11.47□□□□□ -0.57
VCP-202ENST00000417448 CFAP161Q6P656 301 aa11.47□□□□□ -0.57
VCP-202ENST00000417448 TEX43Q6ZNM6 134 aa11.47□□□□□ -0.57
VCP-202ENST00000417448 VCX2Q9H322 139 aa11.47□□□□□ -0.57
VCP-202ENST00000417448 A0A096LNJ9 63 aa11.46□□□□□ -0.57
VCP-202ENST00000417448 COX7A2LO14548 114 aa11.46□□□□□ -0.57
VCP-202ENST00000417448 AMELXQ99217 191 aa11.46□□□□□ -0.57
VCP-202ENST00000417448 AP5S1Q9NUS5 200 aa11.46□□□□□ -0.57
VCP-202ENST00000417448 IGHV1-58A0A0C4DH39 117 aa11.45□□□□□ -0.58
VCP-202ENST00000417448 MALP21145 153 aa11.45□□□□□ -0.58
VCP-202ENST00000417448 UBE2D1P51668 147 aa11.45□□□□□ -0.58
VCP-202ENST00000417448 ODF1Q14990 250 aa11.45□□□□□ -0.58
VCP-202ENST00000417448 LINC00242Q5T6M2 205 aa11.45□□□□□ -0.58
VCP-202ENST00000417448 ERASQ7Z444 233 aa11.45□□□□□ -0.58
VCP-202ENST00000417448 Q6ZN92 141 aa11.44□□□□□ -0.58
VCP-202ENST00000417448 Q6ZRU5 148 aa11.44□□□□□ -0.58
VCP-202ENST00000417448 TIMM17AQ99595 171 aa11.44□□□□□ -0.58
VCP-202ENST00000417448 GVQW2A0A096LPI5 108 aaPredicted RBP11.43□□□□□ -0.58
VCP-202ENST00000417448 IGHV3OR16-9A0A0B4J2B5 98 aa11.43□□□□□ -0.58
VCP-202ENST00000417448 G0S2P27469 103 aa11.43□□□□□ -0.58
VCP-202ENST00000417448 C9orf163Q8N9P6 203 aa11.43□□□□□ -0.58
VCP-202ENST00000417448 C2orf88Q9BSF0 95 aa11.43□□□□□ -0.58
VCP-202ENST00000417448 IGLV4-69A0A075B6H9 119 aa11.41□□□□□ -0.58
VCP-202ENST00000417448 A0A0J9YXV3 536 aa11.41□□□□□ -0.58
VCP-202ENST00000417448 CNBPP62633 177 aaKnown RBP11.41□□□□□ -0.58
VCP-202ENST00000417448 PANO1I0J062 215 aa11.4□□□□□ -0.58
VCP-202ENST00000417448 ZNF561-AS1K7EIQ3 104 aa11.4□□□□□ -0.58
VCP-202ENST00000417448 RAB5BP61020 215 aa11.4□□□□□ -0.58
VCP-202ENST00000417448 BAGE3Q86Y29 109 aa11.4□□□□□ -0.58
VCP-202ENST00000417448 HBDP02042 147 aa11.39□□□□□ -0.59
VCP-202ENST00000417448 NDUFA6P56556 154 aa11.39□□□□□ -0.59
VCP-202ENST00000417448 SDIM1Q6ZPB5 146 aa11.39□□□□□ -0.59
VCP-202ENST00000417448 FAM19A2Q8N3H0 131 aa11.39□□□□□ -0.59
VCP-202ENST00000417448 ORAOV1Q8WV07 137 aa11.39□□□□□ -0.59
VCP-202ENST00000417448 NPSP0C0P6 89 aa11.38□□□□□ -0.59
VCP-202ENST00000417448 CHTF8P0CG12 524 aa11.38□□□□□ -0.59
VCP-202ENST00000417448 PDZD11Q5EBL8 140 aa11.38□□□□□ -0.59
VCP-202ENST00000417448 CST9LQ9H4G1 147 aa11.38□□□□□ -0.59
VCP-202ENST00000417448 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.38□□□□□ -0.59
VCP-202ENST00000417448 IGHV3-64A0A075B6Q5 118 aa11.37□□□□□ -0.59
VCP-202ENST00000417448 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.37□□□□□ -0.59
VCP-202ENST00000417448 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.37□□□□□ -0.59
VCP-202ENST00000417448 NUPR1O60356 82 aa11.37□□□□□ -0.59
VCP-202ENST00000417448 ATP6V1G1O75348 118 aa11.37□□□□□ -0.59
VCP-202ENST00000417448 LINC00310P59036 64 aa11.37□□□□□ -0.59
VCP-202ENST00000417448 SPAG11BQ08648 103 aa11.37□□□□□ -0.59
VCP-202ENST00000417448 PAPPA-AS1Q5QFB9 102 aa11.37□□□□□ -0.59
VCP-202ENST00000417448 A0A087WZ39 114 aa11.36□□□□□ -0.59
VCP-202ENST00000417448 APOMO95445 188 aa11.36□□□□□ -0.59
VCP-202ENST00000417448 SYCNQ0VAF6 134 aa11.36□□□□□ -0.59
VCP-202ENST00000417448 CHCHD1Q96BP2 118 aaKnown RBP11.36□□□□□ -0.59
VCP-202ENST00000417448 KRTAP9-2Q9BYQ4 174 aa11.36□□□□□ -0.59
VCP-202ENST00000417448 CDKN2A-AS1Q9UH64 79 aa11.36□□□□□ -0.59
VCP-202ENST00000417448 SERF1AO75920 110 aa11.35□□□□□ -0.59
VCP-202ENST00000417448 PMVKQ15126 192 aa11.35□□□□□ -0.59
VCP-202ENST00000417448 CARD19Q96LW7 228 aa11.35□□□□□ -0.59
VCP-202ENST00000417448 LPAP08519 4548 aa11.34□□□□□ -0.59
VCP-202ENST00000417448 FAM19A3Q7Z5A8 133 aa11.34□□□□□ -0.59
VCP-202ENST00000417448 CAMK2N2Q96S95 79 aa11.34□□□□□ -0.59
VCP-202ENST00000417448 GEMIN7Q9H840 131 aaKnown RBP11.34□□□□□ -0.59
VCP-202ENST00000417448 LINC01549A6NIU2 74 aa11.33□□□□□ -0.6
VCP-202ENST00000417448 HSBP1O75506 76 aa11.33□□□□□ -0.6
VCP-202ENST00000417448 C10orf25Q5T742 122 aa11.33□□□□□ -0.6
VCP-202ENST00000417448 IGKV2-24A0A0C4DH68 120 aa11.32□□□□□ -0.6
VCP-202ENST00000417448 KIAA0087Q14695 138 aa11.32□□□□□ -0.6
VCP-202ENST00000417448 UNQ6190/PRO20217Q6UXQ8 127 aa11.32□□□□□ -0.6
VCP-202ENST00000417448 LINC00469Q8N7U9 141 aa11.32□□□□□ -0.6
VCP-202ENST00000417448 OR10D4PQ8NGN7 298 aa11.32□□□□□ -0.6
VCP-202ENST00000417448 TOMM7Q9P0U1 55 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms