RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 NOTCH2Q04721 2471 aa9.98□□□□□ -0.81
CCDC88A-204ENST00000413716 TP53TG3Q9ULZ0 132 aa9.97□□□□□ -0.81
CCDC88A-204ENST00000413716 RETNLBQ9BQ08 111 aa9.97□□□□□ -0.81
CCDC88A-204ENST00000413716 RPL28P46779 137 aaKnown RBP9.97□□□□□ -0.81
CCDC88A-204ENST00000413716 PRLHP81277 87 aa9.97□□□□□ -0.81
CCDC88A-204ENST00000413716 PIEZO2Q9H5I5 2752 aa9.97□□□□□ -0.81
CCDC88A-204ENST00000413716 ZNF843Q8N446 348 aa9.96□□□□□ -0.81
CCDC88A-204ENST00000413716 C8orf87E5RJ46 101 aa9.96□□□□□ -0.81
CCDC88A-204ENST00000413716 NTM-AS1Q6ZSK4 140 aa9.96□□□□□ -0.82
CCDC88A-204ENST00000413716 IGLV3-1P01715 115 aa9.96□□□□□ -0.82
CCDC88A-204ENST00000413716 TRBV10-3A0A0K0K1G6 114 aa9.96□□□□□ -0.82
CCDC88A-204ENST00000413716 A0A1B0GU69 56 aa9.96□□□□□ -0.82
CCDC88A-204ENST00000413716 DEFB1P60022 68 aa9.96□□□□□ -0.82
CCDC88A-204ENST00000413716 PCOTHQ58A44 107 aa9.95□□□□□ -0.82
CCDC88A-204ENST00000413716 C1orf137Q5JT78 98 aa9.95□□□□□ -0.82
CCDC88A-204ENST00000413716 UNQ9165/PRO28630Q6UXU0 137 aa9.95□□□□□ -0.82
CCDC88A-204ENST00000413716 C7orf65Q6ZTY9 151 aa9.95□□□□□ -0.82
CCDC88A-204ENST00000413716 hDV103S1A0JD37 113 aa9.95□□□□□ -0.82
CCDC88A-204ENST00000413716 PRORYQ9H606 182 aa9.95□□□□□ -0.82
CCDC88A-204ENST00000413716 REG3GQ6UW15 175 aa9.94□□□□□ -0.82
CCDC88A-204ENST00000413716 THSD7BQ9C0I4 1608 aa9.94□□□□□ -0.82
CCDC88A-204ENST00000413716 M0QY20 66 aa9.94□□□□□ -0.82
CCDC88A-204ENST00000413716 U3KQK5 164 aa9.94□□□□□ -0.82
CCDC88A-204ENST00000413716 C11orf53Q8IXP5 236 aa9.93□□□□□ -0.82
CCDC88A-204ENST00000413716 CCDC140Q96MF4 163 aa9.93□□□□□ -0.82
CCDC88A-204ENST00000413716 FAM215AQ9Y5M1 114 aa9.93□□□□□ -0.82
CCDC88A-204ENST00000413716 Q8N814 137 aa9.93□□□□□ -0.82
CCDC88A-204ENST00000413716 MAPKAPK5-AS1Q8N8E1 139 aa9.93□□□□□ -0.82
CCDC88A-204ENST00000413716 ZNF462Q96JM2 2506 aa9.93□□□□□ -0.82
CCDC88A-204ENST00000413716 TLN2Q9Y4G6 2542 aa9.92□□□□□ -0.82
CCDC88A-204ENST00000413716 Q8N3U1 123 aa9.92□□□□□ -0.82
CCDC88A-204ENST00000413716 TRBV6-4A0A1B0GX49 114 aa9.92□□□□□ -0.82
CCDC88A-204ENST00000413716 HCG22E2RYF7 251 aa9.91□□□□□ -0.82
CCDC88A-204ENST00000413716 SBSPONQ8IVN8 264 aa9.91□□□□□ -0.82
CCDC88A-204ENST00000413716 TRAV10A0A0B4J240 114 aa9.9□□□□□ -0.82
CCDC88A-204ENST00000413716 FLG2Q5D862 2391 aaPredicted RBP9.9□□□□□ -0.82
CCDC88A-204ENST00000413716 FRMD6-AS1P0C7T7 363 aa9.9□□□□□ -0.83
CCDC88A-204ENST00000413716 RNASE3P12724 160 aaKnown RBP9.9□□□□□ -0.83
CCDC88A-204ENST00000413716 Q8N6K4 173 aa9.9□□□□□ -0.83
CCDC88A-204ENST00000413716 IGF2-ASQ6U949 168 aa9.89□□□□□ -0.83
CCDC88A-204ENST00000413716 NRGNQ92686 78 aa9.89□□□□□ -0.83
CCDC88A-204ENST00000413716 ZFP36P26651 326 aaKnown RBP9.89□□□□□ -0.83
CCDC88A-204ENST00000413716 ZNF80P51504 273 aaPredicted RBP9.88□□□□□ -0.83
CCDC88A-204ENST00000413716 RSPO1Q2MKA7 263 aaPredicted RBP9.88□□□□□ -0.83
CCDC88A-204ENST00000413716 Q6ZSR3 168 aa9.88□□□□□ -0.83
CCDC88A-204ENST00000413716 Q8IZM0 81 aa9.88□□□□□ -0.83
CCDC88A-204ENST00000413716 GDF5OSQ5U4N7 250 aa9.88□□□□□ -0.83
CCDC88A-204ENST00000413716 SPRNQ5BIV9 151 aa9.87□□□□□ -0.83
CCDC88A-204ENST00000413716 LELP1Q5T871 98 aa9.87□□□□□ -0.83
CCDC88A-204ENST00000413716 C2orf91Q6ZV80 131 aa9.87□□□□□ -0.83
CCDC88A-204ENST00000413716 DAZAP2Q15038 168 aaPredicted RBP9.86□□□□□ -0.83
CCDC88A-204ENST00000413716 LINC00575Q6W349 94 aa9.86□□□□□ -0.83
CCDC88A-204ENST00000413716 ACYP2P14621 99 aa9.86□□□□□ -0.83
CCDC88A-204ENST00000413716 C1orf64Q8NEQ6 169 aa9.85□□□□□ -0.83
CCDC88A-204ENST00000413716 KPRPQ5T749 579 aaPredicted RBP9.85□□□□□ -0.83
CCDC88A-204ENST00000413716 GRNP28799 593 aaKnown RBP9.85□□□□□ -0.83
CCDC88A-204ENST00000413716 IGLV2-18A0A075B6J9 118 aa9.85□□□□□ -0.83
CCDC88A-204ENST00000413716 ZNF702PQ9H963 129 aa9.85□□□□□ -0.83
CCDC88A-204ENST00000413716 TSHBP01222 138 aa9.84□□□□□ -0.83
CCDC88A-204ENST00000413716 M0R2N4 97 aa9.84□□□□□ -0.83
CCDC88A-204ENST00000413716 Q9BRP9 147 aa9.84□□□□□ -0.83
CCDC88A-204ENST00000413716 E7EUB6 86 aa9.84□□□□□ -0.83
CCDC88A-204ENST00000413716 MSMPQ1L6U9 139 aa9.83□□□□□ -0.84
CCDC88A-204ENST00000413716 IGKV2D-30A0A075B6S6 120 aa9.83□□□□□ -0.84
CCDC88A-204ENST00000413716 A0A087WVE0 104 aa9.83□□□□□ -0.84
CCDC88A-204ENST00000413716 IGKV2-30P06310 120 aa9.83□□□□□ -0.84
CCDC88A-204ENST00000413716 IGLV2-14P01704 120 aa9.83□□□□□ -0.84
CCDC88A-204ENST00000413716 KRTAP27-1Q3LI81 207 aa9.83□□□□□ -0.84
CCDC88A-204ENST00000413716 ATP11AUNQ6ZP68 121 aa9.82□□□□□ -0.84
CCDC88A-204ENST00000413716 PLA2G2EQ9NZK7 142 aa9.82□□□□□ -0.84
CCDC88A-204ENST00000413716 LINC00959A0A1B0GUT2 108 aa9.82□□□□□ -0.84
CCDC88A-204ENST00000413716 DEFB114Q30KQ6 69 aa9.82□□□□□ -0.84
CCDC88A-204ENST00000413716 ANKRD17O75179 2603 aaKnown RBP9.81□□□□□ -0.84
CCDC88A-204ENST00000413716 COL4A6Q14031 1691 aa9.81□□□□□ -0.84
CCDC88A-204ENST00000413716 TNFRSF13BO14836 293 aaPredicted RBP9.81□□□□□ -0.84
CCDC88A-204ENST00000413716 SETD2Q9BYW2 2564 aaPredicted RBP9.8□□□□□ -0.84
CCDC88A-204ENST00000413716 NUPR2A6NF83 97 aa9.8□□□□□ -0.84
CCDC88A-204ENST00000413716 Q6ZTC4 211 aa9.8□□□□□ -0.84
CCDC88A-204ENST00000413716 LY6G6CO95867 125 aa9.8□□□□□ -0.84
CCDC88A-204ENST00000413716 EIF4EBP1Q13541 118 aaPredicted RBP9.8□□□□□ -0.84
CCDC88A-204ENST00000413716 CRIP2P52943 208 aaPredicted RBP9.8□□□□□ -0.84
CCDC88A-204ENST00000413716 MBD6Q96DN6 1003 aa9.8□□□□□ -0.84
CCDC88A-204ENST00000413716 BBC3Q96PG8 261 aaPredicted RBP9.8□□□□□ -0.84
CCDC88A-204ENST00000413716 K7EQG2 157 aa9.8□□□□□ -0.84
CCDC88A-204ENST00000413716 TP53AIP1Q9HCN2 124 aa9.8□□□□□ -0.84
CCDC88A-204ENST00000413716 A0A087WYN8 130 aa9.8□□□□□ -0.84
CCDC88A-204ENST00000413716 SSBP3-AS1Q7Z2R9 100 aa9.8□□□□□ -0.84
CCDC88A-204ENST00000413716 IGLV2-8P01709 118 aa9.79□□□□□ -0.84
CCDC88A-204ENST00000413716 C6orf48Q9UBA6 75 aa9.79□□□□□ -0.84
CCDC88A-204ENST00000413716 CYSRT1A8MQ03 144 aa9.79□□□□□ -0.84
CCDC88A-204ENST00000413716 FSHBP01225 129 aa9.79□□□□□ -0.84
CCDC88A-204ENST00000413716 COL4A4P53420 1690 aaPredicted RBP9.78□□□□□ -0.84
CCDC88A-204ENST00000413716 FN1P02751 2386 aaKnown RBP9.78□□□□□ -0.84
CCDC88A-204ENST00000413716 LTBP2Q14767 1821 aa9.78□□□□□ -0.84
CCDC88A-204ENST00000413716 OXLD1Q5BKU9 147 aa9.78□□□□□ -0.84
CCDC88A-204ENST00000413716 Q8N7P7 452 aa9.78□□□□□ -0.84
CCDC88A-204ENST00000413716 Q6ZS46 218 aa9.78□□□□□ -0.84
CCDC88A-204ENST00000413716 IGLV1-47P01700 117 aa9.78□□□□□ -0.84
CCDC88A-204ENST00000413716 ODF3BA8MYP8 253 aa9.78□□□□□ -0.84
CCDC88A-204ENST00000413716 LINC00337Q8N6G1 96 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms