RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 PTPRBP23467 1997 aa5.38□□□□□ -1.55
SCN9A-202ENST00000409435 C6orf223Q8N319 242 aa5.38□□□□□ -1.55
SCN9A-202ENST00000409435 DOCK11Q5JSL3 2073 aa5.38□□□□□ -1.55
SCN9A-202ENST00000409435 A8MZ25 164 aa5.38□□□□□ -1.55
SCN9A-202ENST00000409435 CCKP06307 115 aa5.38□□□□□ -1.55
SCN9A-202ENST00000409435 LINC00574Q9H8X3 128 aa5.38□□□□□ -1.55
SCN9A-202ENST00000409435 FAM30AQ9NZY2 134 aa5.38□□□□□ -1.55
SCN9A-202ENST00000409435 TRBV7-7A0A0K0K1E9 115 aa5.38□□□□□ -1.55
SCN9A-202ENST00000409435 RPL39P62891 51 aaKnown RBP5.38□□□□□ -1.55
SCN9A-202ENST00000409435 REG3AQ06141 175 aa5.38□□□□□ -1.55
SCN9A-202ENST00000409435 MED12LQ86YW9 2145 aa5.37□□□□□ -1.55
SCN9A-202ENST00000409435 ESRGQ1W209 222 aa5.37□□□□□ -1.55
SCN9A-202ENST00000409435 WFDC13Q8IUB5 93 aa5.37□□□□□ -1.55
SCN9A-202ENST00000409435 PLA2G2EQ9NZK7 142 aa5.37□□□□□ -1.55
SCN9A-202ENST00000409435 TRBV10-1A0A0K0K1A3 114 aa5.37□□□□□ -1.55
SCN9A-202ENST00000409435 IGLV2-11P01706 119 aa5.37□□□□□ -1.55
SCN9A-202ENST00000409435 ODF3Q96PU9 254 aa5.37□□□□□ -1.55
SCN9A-202ENST00000409435 PLAC8L1A1L4L8 177 aa5.36□□□□□ -1.55
SCN9A-202ENST00000409435 RPS28P62857 69 aaKnown RBP5.36□□□□□ -1.55
SCN9A-202ENST00000409435 EPG5Q9HCE0 2579 aa5.36□□□□□ -1.55
SCN9A-202ENST00000409435 MED14OSP0DP75 135 aa5.36□□□□□ -1.55
SCN9A-202ENST00000409435 LINC00269Q8N2A0 174 aa5.36□□□□□ -1.55
SCN9A-202ENST00000409435 ANKRD11Q6UB99 2663 aaPredicted RBP5.36□□□□□ -1.55
SCN9A-202ENST00000409435 LST1O00453 97 aa5.36□□□□□ -1.55
SCN9A-202ENST00000409435 ZNF706Q9Y5V0 76 aaPredicted RBP5.36□□□□□ -1.55
SCN9A-202ENST00000409435 TET2Q6N021 2002 aaPredicted RBP5.36□□□□□ -1.55
SCN9A-202ENST00000409435 COL4A2P08572 1712 aa5.36□□□□□ -1.55
SCN9A-202ENST00000409435 C8orf87E5RJ46 101 aa5.36□□□□□ -1.55
SCN9A-202ENST00000409435 CTRLP40313 264 aa5.36□□□□□ -1.55
SCN9A-202ENST00000409435 LELP1Q5T871 98 aa5.36□□□□□ -1.55
SCN9A-202ENST00000409435 SLPIP03973 132 aa5.35□□□□□ -1.55
SCN9A-202ENST00000409435 Q8N6K4 173 aa5.35□□□□□ -1.55
SCN9A-202ENST00000409435 ZNF106Q9H2Y7 1883 aaKnown RBP5.35□□□□□ -1.55
SCN9A-202ENST00000409435 DEFB1P60022 68 aa5.35□□□□□ -1.55
SCN9A-202ENST00000409435 Q6ZQY7 126 aa5.35□□□□□ -1.55
SCN9A-202ENST00000409435 LINC00336Q6ZUF6 198 aa5.35□□□□□ -1.55
SCN9A-202ENST00000409435 F8WDY8 70 aa5.35□□□□□ -1.55
SCN9A-202ENST00000409435 BEAN1Q3B7T3 259 aa5.35□□□□□ -1.55
SCN9A-202ENST00000409435 UFSP1Q6NVU6 142 aa5.35□□□□□ -1.55
SCN9A-202ENST00000409435 Q6ZSR3 168 aa5.35□□□□□ -1.55
SCN9A-202ENST00000409435 CD164Q04900 197 aa5.35□□□□□ -1.55
SCN9A-202ENST00000409435 LINC00337Q8N6G1 96 aa5.35□□□□□ -1.55
SCN9A-202ENST00000409435 C1orf147Q96MC9 270 aaPredicted RBP5.35□□□□□ -1.55
SCN9A-202ENST00000409435 SPINT4Q6UDR6 99 aa5.35□□□□□ -1.55
SCN9A-202ENST00000409435 REG3GQ6UW15 175 aa5.34□□□□□ -1.55
SCN9A-202ENST00000409435 F8P00451 2351 aa5.34□□□□□ -1.55
SCN9A-202ENST00000409435 Q8N2B8 174 aa5.34□□□□□ -1.56
SCN9A-202ENST00000409435 C20orf203Q8NBC4 194 aa5.34□□□□□ -1.56
SCN9A-202ENST00000409435 TP73-AS1Q9UF72 201 aa5.34□□□□□ -1.56
SCN9A-202ENST00000409435 LINC00308Q8TCZ7 52 aa5.33□□□□□ -1.56
SCN9A-202ENST00000409435 LINC00208Q96KT6 92 aa5.33□□□□□ -1.56
SCN9A-202ENST00000409435 FAM19A1Q7Z5A9 133 aa5.33□□□□□ -1.56
SCN9A-202ENST00000409435 TRBV10-3A0A0K0K1G6 114 aa5.33□□□□□ -1.56
SCN9A-202ENST00000409435 C4orf26Q17RF5 130 aa5.33□□□□□ -1.56
SCN9A-202ENST00000409435 MRGPRG-AS1Q2M3A8 158 aa5.33□□□□□ -1.56
SCN9A-202ENST00000409435 PYGO1Q9Y3Y4 419 aa5.33□□□□□ -1.56
SCN9A-202ENST00000409435 SYCNQ0VAF6 134 aa5.32□□□□□ -1.56
SCN9A-202ENST00000409435 HIGD2AQ9BW72 106 aa5.32□□□□□ -1.56
SCN9A-202ENST00000409435 TRBV6-4A0A1B0GX49 114 aa5.32□□□□□ -1.56
SCN9A-202ENST00000409435 EML5Q05BV3 1969 aa5.32□□□□□ -1.56
SCN9A-202ENST00000409435 TRBV6-1A0A0K0K1D8 114 aa5.32□□□□□ -1.56
SCN9A-202ENST00000409435 FLNBO75369 2602 aaKnown RBP5.32□□□□□ -1.56
SCN9A-202ENST00000409435 H7C423 109 aa5.32□□□□□ -1.56
SCN9A-202ENST00000409435 ZNF580Q9UK33 172 aa5.32□□□□□ -1.56
SCN9A-202ENST00000409435 K7EIL1 84 aa5.32□□□□□ -1.56
SCN9A-202ENST00000409435 TLN1Q9Y490 2541 aaKnown RBP5.31□□□□□ -1.56
SCN9A-202ENST00000409435 EML6Q6ZMW3 1958 aa5.31□□□□□ -1.56
SCN9A-202ENST00000409435 IBA57-AS1B1ANH7 110 aa5.31□□□□□ -1.56
SCN9A-202ENST00000409435 CEP295Q9C0D2 2601 aa5.31□□□□□ -1.56
SCN9A-202ENST00000409435 TNCP24821 2201 aa5.31□□□□□ -1.56
SCN9A-202ENST00000409435 NEXN-AS1Q8NBZ9 246 aa5.31□□□□□ -1.56
SCN9A-202ENST00000409435 CHCHD10Q8WYQ3 142 aaPredicted RBP5.31□□□□□ -1.56
SCN9A-202ENST00000409435 PCNX3Q9H6A9 2034 aa5.31□□□□□ -1.56
SCN9A-202ENST00000409435 PRAC2D3DTV9 90 aa5.31□□□□□ -1.56
SCN9A-202ENST00000409435 WNK1Q9H4A3 2382 aa5.31□□□□□ -1.56
SCN9A-202ENST00000409435 RNASE3P12724 160 aaKnown RBP5.3□□□□□ -1.56
SCN9A-202ENST00000409435 Q6ZVQ6 151 aa5.3□□□□□ -1.56
SCN9A-202ENST00000409435 CRYGAP11844 174 aa5.3□□□□□ -1.56
SCN9A-202ENST00000409435 ATG2AQ2TAZ0 1938 aa5.3□□□□□ -1.56
SCN9A-202ENST00000409435 RAI1Q7Z5J4 1906 aaPredicted RBP5.3□□□□□ -1.56
SCN9A-202ENST00000409435 ODF3L2Q3SX64 289 aa5.3□□□□□ -1.56
SCN9A-202ENST00000409435 RETNLBQ9BQ08 111 aa5.3□□□□□ -1.56
SCN9A-202ENST00000409435 hDV103S1A0JD37 113 aa5.3□□□□□ -1.56
SCN9A-202ENST00000409435 E7EUB6 86 aa5.3□□□□□ -1.56
SCN9A-202ENST00000409435 A0A1B0GXF2 115 aa5.3□□□□□ -1.56
SCN9A-202ENST00000409435 PRM2P04554 102 aa5.29□□□□□ -1.56
SCN9A-202ENST00000409435 A0A087WVE0 104 aa5.29□□□□□ -1.56
SCN9A-202ENST00000409435 NACAE9PAV3 2078 aa5.29□□□□□ -1.56
SCN9A-202ENST00000409435 C2orf91Q6ZV80 131 aa5.29□□□□□ -1.56
SCN9A-202ENST00000409435 MAPKAPK5-AS1Q8N8E1 139 aa5.29□□□□□ -1.56
SCN9A-202ENST00000409435 RPL28P46779 137 aaKnown RBP5.29□□□□□ -1.56
SCN9A-202ENST00000409435 C6orf99Q4VX62 202 aa5.29□□□□□ -1.56
SCN9A-202ENST00000409435 PRR14LQ5THK1 2151 aa5.28□□□□□ -1.56
SCN9A-202ENST00000409435 ZNF22P17026 224 aaPredicted RBP5.28□□□□□ -1.56
SCN9A-202ENST00000409435 DHRS4-AS1Q9P1J3 65 aa5.28□□□□□ -1.56
SCN9A-202ENST00000409435 MTORP42345 2549 aa5.28□□□□□ -1.56
SCN9A-202ENST00000409435 C19orf71A6NCJ1 209 aa5.27□□□□□ -1.56
SCN9A-202ENST00000409435 TNRC6BQ9UPQ9 1833 aaKnown RBP5.27□□□□□ -1.57
SCN9A-202ENST00000409435 IGLV4-69A0A075B6H9 119 aa5.27□□□□□ -1.57
SCN9A-202ENST00000409435 ZNF73O43830 326 aaPredicted RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 126.4 ms