RNA–Protein interactions for RNA: ENST00000396352.8

HOXA3-202, Transcript of homeobox A3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA3, Length 3,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3-202ENST00000396352 BBC3Q96PG8 261 aaPredicted RBP11.13□□□□□ -0.63
HOXA3-202ENST00000396352 TTC32Q5I0X7 151 aa11.13□□□□□ -0.63
HOXA3-202ENST00000396352 ITPR3Q14573 2671 aa11.12□□□□□ -0.63
HOXA3-202ENST00000396352 HERV-K104P63124 156 aa11.12□□□□□ -0.63
HOXA3-202ENST00000396352 MRPL23Q16540 153 aaKnown RBP11.12□□□□□ -0.63
HOXA3-202ENST00000396352 TMEM243Q9BU79 118 aa11.11□□□□□ -0.63
HOXA3-202ENST00000396352 PPDPFQ9H3Y8 114 aa11.11□□□□□ -0.63
HOXA3-202ENST00000396352 LOC100131303A0A0U1RQF7 123 aa11.11□□□□□ -0.63
HOXA3-202ENST00000396352 ESM1Q9NQ30 184 aa11.1□□□□□ -0.63
HOXA3-202ENST00000396352 UBE2L6O14933 153 aa11.1□□□□□ -0.63
HOXA3-202ENST00000396352 WFDC10AQ9H1F0 79 aa11.1□□□□□ -0.63
HOXA3-202ENST00000396352 NOTCH3Q9UM47 2321 aa11.09□□□□□ -0.63
HOXA3-202ENST00000396352 SONP18583 2426 aaKnown RBP11.09□□□□□ -0.63
HOXA3-202ENST00000396352 GAGE7O76087 117 aa11.08□□□□□ -0.64
HOXA3-202ENST00000396352 GAGE12FP0CL80 117 aa11.08□□□□□ -0.64
HOXA3-202ENST00000396352 GAGE12GP0CL81 117 aa11.08□□□□□ -0.64
HOXA3-202ENST00000396352 GAGE12IP0CL82 117 aa11.08□□□□□ -0.64
HOXA3-202ENST00000396352 GAGE6Q13070 117 aa11.08□□□□□ -0.64
HOXA3-202ENST00000396352 C16orf74Q96GX8 76 aa11.08□□□□□ -0.64
HOXA3-202ENST00000396352 FAM218AQ96MZ4 157 aa11.08□□□□□ -0.64
HOXA3-202ENST00000396352 TRACP01848 142 aa11.08□□□□□ -0.64
HOXA3-202ENST00000396352 JMJD1CQ15652 2540 aa11.08□□□□□ -0.64
HOXA3-202ENST00000396352 C22orf24Q9Y442 160 aa11.07□□□□□ -0.64
HOXA3-202ENST00000396352 TRBV6-4A0A1B0GX49 114 aa11.07□□□□□ -0.64
HOXA3-202ENST00000396352 TRGV2A0A075B6R0 118 aa11.06□□□□□ -0.64
HOXA3-202ENST00000396352 OXLD1Q5BKU9 147 aa11.06□□□□□ -0.64
HOXA3-202ENST00000396352 CSNK1G2-AS1Q8NCQ2 148 aa11.06□□□□□ -0.64
HOXA3-202ENST00000396352 COX7B2Q8TF08 81 aa11.06□□□□□ -0.64
HOXA3-202ENST00000396352 C19orf73Q9NVV2 129 aa11.06□□□□□ -0.64
HOXA3-202ENST00000396352 C2CD3Q4AC94 2353 aa11.06□□□□□ -0.64
HOXA3-202ENST00000396352 ZNF843Q8N446 348 aa11.06□□□□□ -0.64
HOXA3-202ENST00000396352 PLA2G2AP14555 144 aa11.05□□□□□ -0.64
HOXA3-202ENST00000396352 OVOL2Q9BRP0 275 aa11.05□□□□□ -0.64
HOXA3-202ENST00000396352 TRBV7-7A0A0K0K1E9 115 aa11.04□□□□□ -0.64
HOXA3-202ENST00000396352 RPL35AP18077 110 aaKnown RBP11.04□□□□□ -0.64
HOXA3-202ENST00000396352 IGLV4-60A0A075B6I1 120 aa11.04□□□□□ -0.64
HOXA3-202ENST00000396352 IGKV2-28A0A075B6P5 120 aa11.04□□□□□ -0.64
HOXA3-202ENST00000396352 CCDC179H3BU77 68 aa11.04□□□□□ -0.64
HOXA3-202ENST00000396352 IGKV2D-28P01615 120 aa11.04□□□□□ -0.64
HOXA3-202ENST00000396352 HIST2H2BCQ6DN03 193 aa11.04□□□□□ -0.64
HOXA3-202ENST00000396352 LINC00337Q8N6G1 96 aa11.04□□□□□ -0.64
HOXA3-202ENST00000396352 B5MCH6 92 aa11.04□□□□□ -0.64
HOXA3-202ENST00000396352 MIR7-3HGQ8N6C7 128 aa11.04□□□□□ -0.64
HOXA3-202ENST00000396352 WFDC11Q8NEX6 87 aa11.04□□□□□ -0.64
HOXA3-202ENST00000396352 RPL28P46779 137 aaKnown RBP11.03□□□□□ -0.64
HOXA3-202ENST00000396352 PF4P02776 101 aa11.03□□□□□ -0.64
HOXA3-202ENST00000396352 FAM222AQ5U5X8 452 aa11.03□□□□□ -0.64
HOXA3-202ENST00000396352 FLNAP21333 2647 aaKnown RBP11.03□□□□□ -0.64
HOXA3-202ENST00000396352 TRAV13-2A0A0B4J235 113 aa11.03□□□□□ -0.64
HOXA3-202ENST00000396352 ACYP1P07311 99 aa11.03□□□□□ -0.64
HOXA3-202ENST00000396352 BAALC-AS2P0C853 105 aa11.03□□□□□ -0.64
HOXA3-202ENST00000396352 CMC4P56277 68 aaPredicted RBP11.03□□□□□ -0.64
HOXA3-202ENST00000396352 TRGV4A0A0C4DH28 118 aa11.02□□□□□ -0.65
HOXA3-202ENST00000396352 IGLV1-51P01701 117 aa11.02□□□□□ -0.65
HOXA3-202ENST00000396352 SMCR5Q8TEV8 140 aa11.02□□□□□ -0.65
HOXA3-202ENST00000396352 FAM110AQ9BQ89 295 aa11.02□□□□□ -0.65
HOXA3-202ENST00000396352 SS18L2Q9UHA2 77 aa11.02□□□□□ -0.65
HOXA3-202ENST00000396352 FHL2Q14192 279 aa11.02□□□□□ -0.65
HOXA3-202ENST00000396352 TRBV6-8A0A0A6YYG3 113 aa11.01□□□□□ -0.65
HOXA3-202ENST00000396352 IGHV3OR16-9A0A0B4J2B5 98 aa11.01□□□□□ -0.65
HOXA3-202ENST00000396352 IGKV3OR2-268A0A0C4DH90 116 aa11.01□□□□□ -0.65
HOXA3-202ENST00000396352 TOMM7Q9P0U1 55 aa11.01□□□□□ -0.65
HOXA3-202ENST00000396352 CRPP02741 224 aa11.01□□□□□ -0.65
HOXA3-202ENST00000396352 LINC01006Q8NI28 216 aa11.01□□□□□ -0.65
HOXA3-202ENST00000396352 SND1-IT1Q9HBX3 110 aa11.01□□□□□ -0.65
HOXA3-202ENST00000396352 SETD2Q9BYW2 2564 aaPredicted RBP11□□□□□ -0.65
HOXA3-202ENST00000396352 SDIM1Q6ZPB5 146 aa10.99□□□□□ -0.65
HOXA3-202ENST00000396352 Q9HAA7 133 aa10.99□□□□□ -0.65
HOXA3-202ENST00000396352 A0A087WZ39 114 aa10.98□□□□□ -0.65
HOXA3-202ENST00000396352 CCL18P55774 89 aa10.98□□□□□ -0.65
HOXA3-202ENST00000396352 CHCHD5Q9BSY4 110 aa10.98□□□□□ -0.65
HOXA3-202ENST00000396352 LINC00158P58513 81 aa10.97□□□□□ -0.65
HOXA3-202ENST00000396352 C16orf95Q9H693 158 aa10.97□□□□□ -0.65
HOXA3-202ENST00000396352 SMIM11BQ8TCY0 68 aa10.97□□□□□ -0.65
HOXA3-202ENST00000396352 CCDC168Q8NDH2 2452 aa10.96□□□□□ -0.65
HOXA3-202ENST00000396352 A0A087WYN8 130 aa10.96□□□□□ -0.66
HOXA3-202ENST00000396352 IBA57-AS1B1ANH7 110 aa10.96□□□□□ -0.66
HOXA3-202ENST00000396352 MALP21145 153 aa10.96□□□□□ -0.66
HOXA3-202ENST00000396352 IMUPQ9GZP8 106 aa10.96□□□□□ -0.66
HOXA3-202ENST00000396352 KRTAP1-1Q07627 177 aa10.95□□□□□ -0.66
HOXA3-202ENST00000396352 C5orf38Q86SI9 138 aa10.95□□□□□ -0.66
HOXA3-202ENST00000396352 RNASE1P07998 156 aaKnown RBP10.95□□□□□ -0.66
HOXA3-202ENST00000396352 LINC00643Q86TS7 51 aa10.95□□□□□ -0.66
HOXA3-202ENST00000396352 ANK3Q12955 4377 aaKnown RBP10.95□□□□□ -0.66
HOXA3-202ENST00000396352 LINC00959A0A1B0GUT2 108 aa10.94□□□□□ -0.66
HOXA3-202ENST00000396352 INAFM2P0DMQ5 153 aa10.93□□□□□ -0.66
HOXA3-202ENST00000396352 PFN2P35080 140 aa10.93□□□□□ -0.66
HOXA3-202ENST00000396352 PDZD2O15018 2839 aa10.93□□□□□ -0.66
HOXA3-202ENST00000396352 FAM236AA0A1B0GUQ0 79 aa10.92□□□□□ -0.66
HOXA3-202ENST00000396352 FAM236BA0A1B0GV22 79 aa10.92□□□□□ -0.66
HOXA3-202ENST00000396352 C9orf129Q5T035 196 aaKnown RBP10.92□□□□□ -0.66
HOXA3-202ENST00000396352 TENM4Q6N022 2769 aa10.91□□□□□ -0.66
HOXA3-202ENST00000396352 DEFB130BP0DP73 79 aa10.91□□□□□ -0.66
HOXA3-202ENST00000396352 DEFB130AP0DP74 79 aa10.91□□□□□ -0.66
HOXA3-202ENST00000396352 GAGE2AQ6NT46 116 aa10.9□□□□□ -0.66
HOXA3-202ENST00000396352 LINC00612Q8N6U2 182 aa10.9□□□□□ -0.66
HOXA3-202ENST00000396352 KIR2DL5BQ8NHK3 375 aa10.9□□□□□ -0.66
HOXA3-202ENST00000396352 H0YGX0 51 aa10.9□□□□□ -0.67
HOXA3-202ENST00000396352 DNAL4O96015 105 aa10.89□□□□□ -0.67
HOXA3-202ENST00000396352 C11orf68Q9H3H3 251 aaKnown RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 142 ms