RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 LST1O00453 97 aa11.68□□□□□ -0.54
PCDH1-203ENST00000394536 NDUFA1O15239 70 aa11.68□□□□□ -0.54
PCDH1-203ENST00000394536 HERV-K104P63124 156 aa11.68□□□□□ -0.54
PCDH1-203ENST00000394536 COX7B2Q8TF08 81 aa11.68□□□□□ -0.54
PCDH1-203ENST00000394536 SPANXDQ9BXN6 97 aa11.67□□□□□ -0.54
PCDH1-203ENST00000394536 SPANXCQ9NY87 97 aa11.67□□□□□ -0.54
PCDH1-203ENST00000394536 COX7A2LO14548 114 aa11.67□□□□□ -0.54
PCDH1-203ENST00000394536 CRYBG3Q68DQ2 2970 aa11.67□□□□□ -0.54
PCDH1-203ENST00000394536 SS18Q15532 418 aa11.67□□□□□ -0.54
PCDH1-203ENST00000394536 TIRAPP58753 221 aa11.66□□□□□ -0.54
PCDH1-203ENST00000394536 S100A7L2Q5SY68 101 aa11.66□□□□□ -0.54
PCDH1-203ENST00000394536 CCDC179H3BU77 68 aa11.66□□□□□ -0.54
PCDH1-203ENST00000394536 ODF3L2Q3SX64 289 aa11.66□□□□□ -0.54
PCDH1-203ENST00000394536 CELSR1Q9NYQ6 3014 aa11.65□□□□□ -0.54
PCDH1-203ENST00000394536 CFAP46Q8IYW2 2715 aa11.65□□□□□ -0.54
PCDH1-203ENST00000394536 IGKV3D-7A0A0C4DH55 119 aa11.65□□□□□ -0.54
PCDH1-203ENST00000394536 LECT2O14960 151 aa11.65□□□□□ -0.54
PCDH1-203ENST00000394536 DEFB4AO15263 64 aa11.65□□□□□ -0.54
PCDH1-203ENST00000394536 TRBV10-1A0A0K0K1A3 114 aa11.64□□□□□ -0.55
PCDH1-203ENST00000394536 HIST2H2BCQ6DN03 193 aa11.64□□□□□ -0.55
PCDH1-203ENST00000394536 ITPR3Q14573 2671 aa11.64□□□□□ -0.55
PCDH1-203ENST00000394536 GYPEP15421 78 aa11.64□□□□□ -0.55
PCDH1-203ENST00000394536 PLA2G2AP14555 144 aa11.63□□□□□ -0.55
PCDH1-203ENST00000394536 CMC4P56277 68 aaPredicted RBP11.63□□□□□ -0.55
PCDH1-203ENST00000394536 EIF4EBP3O60516 100 aaPredicted RBP11.63□□□□□ -0.55
PCDH1-203ENST00000394536 WFDC11Q8NEX6 87 aa11.63□□□□□ -0.55
PCDH1-203ENST00000394536 DNAJC9-AS1A6NH13 148 aa11.62□□□□□ -0.55
PCDH1-203ENST00000394536 ANGP03950 147 aaKnown RBP11.62□□□□□ -0.55
PCDH1-203ENST00000394536 C14orf132Q9NPU4 83 aa11.62□□□□□ -0.55
PCDH1-203ENST00000394536 IGSF10Q6WRI0 2623 aa11.62□□□□□ -0.55
PCDH1-203ENST00000394536 SLPIP03973 132 aa11.62□□□□□ -0.55
PCDH1-203ENST00000394536 C1orf158Q8N1D5 194 aa11.61□□□□□ -0.55
PCDH1-203ENST00000394536 SMIM1B2RUZ4 78 aa11.61□□□□□ -0.55
PCDH1-203ENST00000394536 C16orf74Q96GX8 76 aa11.61□□□□□ -0.55
PCDH1-203ENST00000394536 NBEAL2Q6ZNJ1 2754 aa11.61□□□□□ -0.55
PCDH1-203ENST00000394536 LAMTOR3Q9UHA4 124 aa11.6□□□□□ -0.55
PCDH1-203ENST00000394536 CDC42SE2Q9NRR3 84 aa11.6□□□□□ -0.55
PCDH1-203ENST00000394536 HECTD1Q9ULT8 2610 aa11.59□□□□□ -0.55
PCDH1-203ENST00000394536 ACYP1P07311 99 aa11.59□□□□□ -0.55
PCDH1-203ENST00000394536 Q8N2B8 174 aa11.59□□□□□ -0.55
PCDH1-203ENST00000394536 TIMM17BO60830 172 aa11.58□□□□□ -0.56
PCDH1-203ENST00000394536 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.58□□□□□ -0.56
PCDH1-203ENST00000394536 OVOL2Q9BRP0 275 aa11.58□□□□□ -0.56
PCDH1-203ENST00000394536 F5H768 121 aa11.58□□□□□ -0.56
PCDH1-203ENST00000394536 GCN1Q92616 2671 aaKnown RBP11.57□□□□□ -0.56
PCDH1-203ENST00000394536 TRAV25A0A0B4J276 109 aa11.57□□□□□ -0.56
PCDH1-203ENST00000394536 C11orf72Q8NBR9 251 aa11.57□□□□□ -0.56
PCDH1-203ENST00000394536 SBSPONQ8IVN8 264 aa11.56□□□□□ -0.56
PCDH1-203ENST00000394536 UTP20O75691 2785 aaKnown RBP11.56□□□□□ -0.56
PCDH1-203ENST00000394536 SDIM1Q6ZPB5 146 aa11.55□□□□□ -0.56
PCDH1-203ENST00000394536 LITAFQ99732 161 aa11.55□□□□□ -0.56
PCDH1-203ENST00000394536 LINC00643Q86TS7 51 aa11.55□□□□□ -0.56
PCDH1-203ENST00000394536 CITED1Q99966 193 aa11.55□□□□□ -0.56
PCDH1-203ENST00000394536 CUBNO60494 3623 aa11.54□□□□□ -0.56
PCDH1-203ENST00000394536 NTM-AS1Q6ZSK4 140 aa11.54□□□□□ -0.56
PCDH1-203ENST00000394536 IGLV4-60A0A075B6I1 120 aa11.54□□□□□ -0.56
PCDH1-203ENST00000394536 H0YGX0 51 aa11.53□□□□□ -0.56
PCDH1-203ENST00000394536 TRBV6-8A0A0A6YYG3 113 aa11.53□□□□□ -0.56
PCDH1-203ENST00000394536 BEAN1Q3B7T3 259 aa11.53□□□□□ -0.56
PCDH1-203ENST00000394536 NF1P21359 2839 aa11.53□□□□□ -0.56
PCDH1-203ENST00000394536 NCR3O14931 201 aa11.53□□□□□ -0.56
PCDH1-203ENST00000394536 DAD1P61803 113 aa11.53□□□□□ -0.56
PCDH1-203ENST00000394536 ORMDL1Q9P0S3 153 aa11.52□□□□□ -0.56
PCDH1-203ENST00000394536 SOSTDC1Q6X4U4 206 aa11.52□□□□□ -0.57
PCDH1-203ENST00000394536 SMIM11BQ8TCY0 68 aa11.52□□□□□ -0.57
PCDH1-203ENST00000394536 TRACP01848 142 aa11.52□□□□□ -0.57
PCDH1-203ENST00000394536 FBN2P35556 2912 aa11.5□□□□□ -0.57
PCDH1-203ENST00000394536 CCL18P55774 89 aa11.5□□□□□ -0.57
PCDH1-203ENST00000394536 DEFB135Q30KP9 77 aa11.5□□□□□ -0.57
PCDH1-203ENST00000394536 A0A1B0GX51 115 aa11.5□□□□□ -0.57
PCDH1-203ENST00000394536 HAMPP81172 84 aa11.5□□□□□ -0.57
PCDH1-203ENST00000394536 LINC00269Q8N2A0 174 aa11.49□□□□□ -0.57
PCDH1-203ENST00000394536 LINC01006Q8NI28 216 aa11.49□□□□□ -0.57
PCDH1-203ENST00000394536 LINC00526Q96FQ7 95 aa11.49□□□□□ -0.57
PCDH1-203ENST00000394536 PRR3P79522 188 aaKnown RBP11.48□□□□□ -0.57
PCDH1-203ENST00000394536 TRBV6-4A0A1B0GX49 114 aa11.48□□□□□ -0.57
PCDH1-203ENST00000394536 LINC00482Q8N8I6 264 aa11.48□□□□□ -0.57
PCDH1-203ENST00000394536 ATRQ13535 2644 aa11.48□□□□□ -0.57
PCDH1-203ENST00000394536 FLNBO75369 2602 aaKnown RBP11.46□□□□□ -0.57
PCDH1-203ENST00000394536 IGLV5-39A0A0G2JS06 123 aa11.46□□□□□ -0.57
PCDH1-203ENST00000394536 LINC00337Q8N6G1 96 aa11.46□□□□□ -0.57
PCDH1-203ENST00000394536 MRPL23Q16540 153 aaKnown RBP11.46□□□□□ -0.58
PCDH1-203ENST00000394536 BBC3Q96PG8 261 aaPredicted RBP11.46□□□□□ -0.58
PCDH1-203ENST00000394536 A0A087WYN8 130 aa11.45□□□□□ -0.58
PCDH1-203ENST00000394536 F8P00451 2351 aa11.45□□□□□ -0.58
PCDH1-203ENST00000394536 IBA57-AS1B1ANH7 110 aa11.45□□□□□ -0.58
PCDH1-203ENST00000394536 FAM222AQ5U5X8 452 aa11.45□□□□□ -0.58
PCDH1-203ENST00000394536 FAM218AQ96MZ4 157 aa11.45□□□□□ -0.58
PCDH1-203ENST00000394536 UBL5Q9BZL1 73 aa11.45□□□□□ -0.58
PCDH1-203ENST00000394536 PRO0255Q9UI72 69 aa11.45□□□□□ -0.58
PCDH1-203ENST00000394536 LINC00959A0A1B0GUT2 108 aa11.44□□□□□ -0.58
PCDH1-203ENST00000394536 M0QXV9 152 aa11.43□□□□□ -0.58
PCDH1-203ENST00000394536 Q6Q795 121 aa11.43□□□□□ -0.58
PCDH1-203ENST00000394536 FAM240AA0A1B0GVK7 77 aa11.43□□□□□ -0.58
PCDH1-203ENST00000394536 KLK12Q9UKR0 248 aa11.43□□□□□ -0.58
PCDH1-203ENST00000394536 CSDC2Q9Y534 153 aaKnown RBP11.42□□□□□ -0.58
PCDH1-203ENST00000394536 USP24Q9UPU5 2620 aa11.42□□□□□ -0.58
PCDH1-203ENST00000394536 ZNF843Q8N446 348 aa11.42□□□□□ -0.58
PCDH1-203ENST00000394536 C9orf116Q5BN46 136 aaPredicted RBP11.41□□□□□ -0.58
PCDH1-203ENST00000394536 TMEM126AQ9H061 195 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms