RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TEN1Q86WV5 123 aa9.46□□□□□ -0.9
CCDC3-202ENST00000378839 C16orf74Q96GX8 76 aa9.46□□□□□ -0.9
CCDC3-202ENST00000378839 HIVEP2P31629 2446 aa9.45□□□□□ -0.9
CCDC3-202ENST00000378839 OVOL2Q9BRP0 275 aa9.45□□□□□ -0.9
CCDC3-202ENST00000378839 NBEAL2Q6ZNJ1 2754 aa9.45□□□□□ -0.9
CCDC3-202ENST00000378839 DAZ4Q86SG3 579 aaKnown RBP9.45□□□□□ -0.9
CCDC3-202ENST00000378839 DAZ3Q9NR90 486 aaKnown RBP9.45□□□□□ -0.9
CCDC3-202ENST00000378839 CDC42SE2Q9NRR3 84 aa9.45□□□□□ -0.9
CCDC3-202ENST00000378839 TRAV13-1A0A0B4J241 112 aa9.45□□□□□ -0.9
CCDC3-202ENST00000378839 DGAT2L7PQ6IED9 249 aa9.45□□□□□ -0.9
CCDC3-202ENST00000378839 TRGV2A0A075B6R0 118 aa9.44□□□□□ -0.9
CCDC3-202ENST00000378839 A0A0B4J2C4 111 aa9.44□□□□□ -0.9
CCDC3-202ENST00000378839 TEX49A0A1B0GTD5 131 aa9.44□□□□□ -0.9
CCDC3-202ENST00000378839 PRSS2P07478 247 aa9.44□□□□□ -0.9
CCDC3-202ENST00000378839 LINC00482Q8N8I6 264 aa9.44□□□□□ -0.9
CCDC3-202ENST00000378839 IGLV5-39A0A0G2JS06 123 aa9.43□□□□□ -0.9
CCDC3-202ENST00000378839 FHL2Q14192 279 aa9.43□□□□□ -0.9
CCDC3-202ENST00000378839 SPANXDQ9BXN6 97 aa9.43□□□□□ -0.9
CCDC3-202ENST00000378839 SPANXCQ9NY87 97 aa9.43□□□□□ -0.9
CCDC3-202ENST00000378839 SLC25A20O43772 301 aa9.43□□□□□ -0.9
CCDC3-202ENST00000378839 CFAP161Q6P656 301 aa9.43□□□□□ -0.9
CCDC3-202ENST00000378839 SMIM1B2RUZ4 78 aa9.42□□□□□ -0.9
CCDC3-202ENST00000378839 F5H768 121 aa9.42□□□□□ -0.9
CCDC3-202ENST00000378839 CMC4P56277 68 aaPredicted RBP9.42□□□□□ -0.9
CCDC3-202ENST00000378839 MIAQ16674 131 aa9.42□□□□□ -0.9
CCDC3-202ENST00000378839 FAM19A3Q7Z5A8 133 aa9.42□□□□□ -0.9
CCDC3-202ENST00000378839 CSDC2Q9Y534 153 aaKnown RBP9.42□□□□□ -0.9
CCDC3-202ENST00000378839 NHLRC4P0CG21 123 aaPredicted RBP9.42□□□□□ -0.9
CCDC3-202ENST00000378839 ZNF625Q96I27 306 aaPredicted RBP9.42□□□□□ -0.9
CCDC3-202ENST00000378839 NDUFA1O15239 70 aa9.41□□□□□ -0.9
CCDC3-202ENST00000378839 FN1P02751 2386 aaKnown RBP9.41□□□□□ -0.9
CCDC3-202ENST00000378839 NOTCH2Q04721 2471 aa9.4□□□□□ -0.9
CCDC3-202ENST00000378839 BAHCC1Q9P281 2608 aa9.4□□□□□ -0.9
CCDC3-202ENST00000378839 TRBV6-4A0A1B0GX49 114 aa9.4□□□□□ -0.9
CCDC3-202ENST00000378839 NDUFV3P56181 108 aaKnown RBP9.4□□□□□ -0.9
CCDC3-202ENST00000378839 INAFM1C9JVW0 142 aa9.4□□□□□ -0.91
CCDC3-202ENST00000378839 HERVK_113P63121 156 aa9.4□□□□□ -0.91
CCDC3-202ENST00000378839 C15orf53Q8NAA6 179 aa9.4□□□□□ -0.91
CCDC3-202ENST00000378839 Q9H8V8 135 aa9.4□□□□□ -0.91
CCDC3-202ENST00000378839 IGLV4-60A0A075B6I1 120 aa9.39□□□□□ -0.91
CCDC3-202ENST00000378839 A0A0U1RRA0 63 aa9.39□□□□□ -0.91
CCDC3-202ENST00000378839 TRIAP1O43715 76 aa9.39□□□□□ -0.91
CCDC3-202ENST00000378839 TRGV4A0A0C4DH28 118 aa9.39□□□□□ -0.91
CCDC3-202ENST00000378839 CHCHD5Q9BSY4 110 aa9.39□□□□□ -0.91
CCDC3-202ENST00000378839 NSD1Q96L73 2696 aaPredicted RBP9.39□□□□□ -0.91
CCDC3-202ENST00000378839 TMEM243Q9BU79 118 aa9.38□□□□□ -0.91
CCDC3-202ENST00000378839 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.38□□□□□ -0.91
CCDC3-202ENST00000378839 PF4P02776 101 aa9.38□□□□□ -0.91
CCDC3-202ENST00000378839 DEFB130BP0DP73 79 aa9.38□□□□□ -0.91
CCDC3-202ENST00000378839 DEFB130AP0DP74 79 aa9.38□□□□□ -0.91
CCDC3-202ENST00000378839 MEIG1Q5JSS6 88 aa9.38□□□□□ -0.91
CCDC3-202ENST00000378839 SOSTDC1Q6X4U4 206 aa9.38□□□□□ -0.91
CCDC3-202ENST00000378839 X6R8D5 127 aa9.38□□□□□ -0.91
CCDC3-202ENST00000378839 IFITM1P13164 125 aa9.37□□□□□ -0.91
CCDC3-202ENST00000378839 MRPL23Q16540 153 aaKnown RBP9.37□□□□□ -0.91
CCDC3-202ENST00000378839 CYSRT1A8MQ03 144 aa9.36□□□□□ -0.91
CCDC3-202ENST00000378839 TIMM17BO60830 172 aa9.36□□□□□ -0.91
CCDC3-202ENST00000378839 HIVEP1P15822 2718 aa9.36□□□□□ -0.91
CCDC3-202ENST00000378839 TRBV6-8A0A0A6YYG3 113 aa9.35□□□□□ -0.91
CCDC3-202ENST00000378839 UBE2L6O14933 153 aa9.35□□□□□ -0.91
CCDC3-202ENST00000378839 LINC00612Q8N6U2 182 aa9.35□□□□□ -0.91
CCDC3-202ENST00000378839 TRAV8-4A0A0B4J246 113 aa9.35□□□□□ -0.91
CCDC3-202ENST00000378839 IGKV3OR2-268A0A0C4DH90 116 aa9.35□□□□□ -0.91
CCDC3-202ENST00000378839 LINC00308Q8TCZ7 52 aa9.35□□□□□ -0.91
CCDC3-202ENST00000378839 TRBV30A0A0K0K1B3 111 aa9.34□□□□□ -0.91
CCDC3-202ENST00000378839 LYRM7Q5U5X0 104 aa9.34□□□□□ -0.91
CCDC3-202ENST00000378839 ATP6V0E2Q8NHE4 81 aa9.34□□□□□ -0.91
CCDC3-202ENST00000378839 ICOSQ9Y6W8 199 aa9.34□□□□□ -0.91
CCDC3-202ENST00000378839 TMEM262E9PQX1 116 aa9.34□□□□□ -0.91
CCDC3-202ENST00000378839 DEFB4AO15263 64 aa9.33□□□□□ -0.92
CCDC3-202ENST00000378839 CLEC2BQ92478 149 aa9.33□□□□□ -0.92
CCDC3-202ENST00000378839 PPDPFQ9H3Y8 114 aa9.33□□□□□ -0.92
CCDC3-202ENST00000378839 KIR2DL5BQ8NHK3 375 aa9.32□□□□□ -0.92
CCDC3-202ENST00000378839 RPL13AP40429 203 aaKnown RBP9.32□□□□□ -0.92
CCDC3-202ENST00000378839 PRIMA1Q86XR5 153 aa9.32□□□□□ -0.92
CCDC3-202ENST00000378839 C2orf82Q6UX34 121 aa9.31□□□□□ -0.92
CCDC3-202ENST00000378839 CITED1Q99966 193 aa9.31□□□□□ -0.92
CCDC3-202ENST00000378839 A0A096LPF7 62 aa9.31□□□□□ -0.92
CCDC3-202ENST00000378839 LINC01620Q4KN68 170 aa9.31□□□□□ -0.92
CCDC3-202ENST00000378839 H7C423 109 aa9.3□□□□□ -0.92
CCDC3-202ENST00000378839 GYPEP15421 78 aa9.3□□□□□ -0.92
CCDC3-202ENST00000378839 KLK5Q9Y337 293 aaPredicted RBP9.3□□□□□ -0.92
CCDC3-202ENST00000378839 IGHV3OR16-9A0A0B4J2B5 98 aa9.3□□□□□ -0.92
CCDC3-202ENST00000378839 LOC107984640A0A0U1RRK4 108 aa9.29□□□□□ -0.92
CCDC3-202ENST00000378839 ATXN8Q156A1 80 aa9.29□□□□□ -0.92
CCDC3-202ENST00000378839 DEFB135Q30KP9 77 aa9.29□□□□□ -0.92
CCDC3-202ENST00000378839 FAM222AQ5U5X8 452 aa9.29□□□□□ -0.92
CCDC3-202ENST00000378839 FLNBO75369 2602 aaKnown RBP9.28□□□□□ -0.92
CCDC3-202ENST00000378839 Q8N3U1 123 aa9.28□□□□□ -0.92
CCDC3-202ENST00000378839 ATRQ13535 2644 aa9.28□□□□□ -0.92
CCDC3-202ENST00000378839 CIRBPQ14011 172 aaKnown RBP9.28□□□□□ -0.92
CCDC3-202ENST00000378839 ANK2Q01484 3957 aa9.28□□□□□ -0.92
CCDC3-202ENST00000378839 UBE2WQ96B02 151 aa9.28□□□□□ -0.92
CCDC3-202ENST00000378839 C5orf38Q86SI9 138 aa9.27□□□□□ -0.93
CCDC3-202ENST00000378839 COX7B2Q8TF08 81 aa9.27□□□□□ -0.93
CCDC3-202ENST00000378839 TOMM7Q9P0U1 55 aa9.26□□□□□ -0.93
CCDC3-202ENST00000378839 TEP1Q99973 2627 aaKnown RBP9.26□□□□□ -0.93
CCDC3-202ENST00000378839 FAM236AA0A1B0GUQ0 79 aa9.26□□□□□ -0.93
CCDC3-202ENST00000378839 LINC00959A0A1B0GUT2 108 aa9.26□□□□□ -0.93
CCDC3-202ENST00000378839 FAM236BA0A1B0GV22 79 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms