RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 TEX43Q6ZNM6 134 aa8.62□□□□□ -1.03
VPS28-202ENST00000377348 URB1-AS1Q96HZ7 61 aa8.62□□□□□ -1.03
VPS28-202ENST00000377348 AMELXQ99217 191 aa8.61□□□□□ -1.03
VPS28-202ENST00000377348 PCLOQ9Y6V0 5065 aa8.61□□□□□ -1.03
VPS28-202ENST00000377348 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.6□□□□□ -1.03
VPS28-202ENST00000377348 IGHV3OR16-9A0A0B4J2B5 98 aa8.6□□□□□ -1.03
VPS28-202ENST00000377348 G0S2P27469 103 aa8.6□□□□□ -1.03
VPS28-202ENST00000377348 UBE2D1P51668 147 aa8.6□□□□□ -1.03
VPS28-202ENST00000377348 COX6A2Q02221 97 aa8.6□□□□□ -1.03
VPS28-202ENST00000377348 LINC00242Q5T6M2 205 aa8.6□□□□□ -1.03
VPS28-202ENST00000377348 Q6ZN92 141 aa8.6□□□□□ -1.03
VPS28-202ENST00000377348 SDIM1Q6ZPB5 146 aa8.6□□□□□ -1.03
VPS28-202ENST00000377348 Q8N1X5 172 aa8.6□□□□□ -1.03
VPS28-202ENST00000377348 SCGB3A1Q96QR1 104 aa8.6□□□□□ -1.03
VPS28-202ENST00000377348 TIMM17AQ99595 171 aa8.6□□□□□ -1.03
VPS28-202ENST00000377348 VCX2Q9H322 139 aa8.6□□□□□ -1.03
VPS28-202ENST00000377348 COLCA2A8K830 154 aa8.59□□□□□ -1.03
VPS28-202ENST00000377348 SCXQ7RTU7 201 aa8.59□□□□□ -1.03
VPS28-202ENST00000377348 C2orf88Q9BSF0 95 aa8.59□□□□□ -1.03
VPS28-202ENST00000377348 IGLV4-69A0A075B6H9 119 aa8.58□□□□□ -1.04
VPS28-202ENST00000377348 IGHV3-64A0A075B6Q5 118 aa8.58□□□□□ -1.04
VPS28-202ENST00000377348 A0A096LNJ9 63 aa8.58□□□□□ -1.04
VPS28-202ENST00000377348 PANO1I0J062 215 aa8.58□□□□□ -1.04
VPS28-202ENST00000377348 ZNF561-AS1K7EIQ3 104 aa8.58□□□□□ -1.04
VPS28-202ENST00000377348 NPSP0C0P6 89 aa8.58□□□□□ -1.04
VPS28-202ENST00000377348 LINC00614P0C842 121 aa8.58□□□□□ -1.04
VPS28-202ENST00000377348 PMCHL1Q16048 86 aa8.58□□□□□ -1.04
VPS28-202ENST00000377348 ERASQ7Z444 233 aa8.58□□□□□ -1.04
VPS28-202ENST00000377348 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.58□□□□□ -1.04
VPS28-202ENST00000377348 APOMO95445 188 aa8.57□□□□□ -1.04
VPS28-202ENST00000377348 TRGC2P03986 189 aa8.57□□□□□ -1.04
VPS28-202ENST00000377348 CIRBP-AS1Q8TBR5 109 aa8.57□□□□□ -1.04
VPS28-202ENST00000377348 CHAC1Q9BUX1 264 aa8.57□□□□□ -1.04
VPS28-202ENST00000377348 CHTF8P0CG12 524 aa8.56□□□□□ -1.04
VPS28-202ENST00000377348 SPAG11BQ08648 103 aa8.56□□□□□ -1.04
VPS28-202ENST00000377348 ORAOV1Q8WV07 137 aa8.56□□□□□ -1.04
VPS28-202ENST00000377348 CARD19Q96LW7 228 aa8.56□□□□□ -1.04
VPS28-202ENST00000377348 VPS13BQ7Z7G8 4022 aa8.56□□□□□ -1.04
VPS28-202ENST00000377348 A0A087WZ39 114 aa8.55□□□□□ -1.04
VPS28-202ENST00000377348 SYCNQ0VAF6 134 aa8.55□□□□□ -1.04
VPS28-202ENST00000377348 PAPPA-AS1Q5QFB9 102 aa8.55□□□□□ -1.04
VPS28-202ENST00000377348 Q6ZRU5 148 aa8.55□□□□□ -1.04
VPS28-202ENST00000377348 A0A0J9YXV3 536 aa8.54□□□□□ -1.04
VPS28-202ENST00000377348 HBDP02042 147 aa8.54□□□□□ -1.04
VPS28-202ENST00000377348 RAB5BP61020 215 aa8.54□□□□□ -1.04
VPS28-202ENST00000377348 Q5VSD8 79 aa8.54□□□□□ -1.04
VPS28-202ENST00000377348 FAM19A3Q7Z5A8 133 aa8.54□□□□□ -1.04
VPS28-202ENST00000377348 OR10D4PQ8NGN7 298 aa8.54□□□□□ -1.04
VPS28-202ENST00000377348 CAMK2N2Q96S95 79 aa8.54□□□□□ -1.04
VPS28-202ENST00000377348 LINC01549A6NIU2 74 aa8.53□□□□□ -1.04
VPS28-202ENST00000377348 EPM2AB3EWF7 344 aa8.53□□□□□ -1.04
VPS28-202ENST00000377348 C2orf48Q96LS8 159 aa8.53□□□□□ -1.04
VPS28-202ENST00000377348 CST9LQ9H4G1 147 aa8.53□□□□□ -1.04
VPS28-202ENST00000377348 IGKV2-24A0A0C4DH68 120 aa8.52□□□□□ -1.05
VPS28-202ENST00000377348 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.52□□□□□ -1.05
VPS28-202ENST00000377348 SRRM2Q9UQ35 2752 aaKnown RBP8.52□□□□□ -1.05
VPS28-202ENST00000377348 A0A096LNI7 61 aa8.51□□□□□ -1.05
VPS28-202ENST00000377348 HERVK_113P63121 156 aa8.51□□□□□ -1.05
VPS28-202ENST00000377348 CIRBPQ14011 172 aaKnown RBP8.51□□□□□ -1.05
VPS28-202ENST00000377348 KIAA0087Q14695 138 aa8.51□□□□□ -1.05
VPS28-202ENST00000377348 PMVKQ15126 192 aa8.51□□□□□ -1.05
VPS28-202ENST00000377348 PDZD11Q5EBL8 140 aa8.51□□□□□ -1.05
VPS28-202ENST00000377348 C10orf25Q5T742 122 aa8.51□□□□□ -1.05
VPS28-202ENST00000377348 BAGE3Q86Y29 109 aa8.51□□□□□ -1.05
VPS28-202ENST00000377348 LINC00528Q8N1L1 170 aa8.51□□□□□ -1.05
VPS28-202ENST00000377348 CHCHD1Q96BP2 118 aaKnown RBP8.51□□□□□ -1.05
VPS28-202ENST00000377348 DPH3Q96FX2 82 aa8.51□□□□□ -1.05
VPS28-202ENST00000377348 GEMIN7Q9H840 131 aaKnown RBP8.51□□□□□ -1.05
VPS28-202ENST00000377348 CDKN2A-AS1Q9UH64 79 aa8.51□□□□□ -1.05
VPS28-202ENST00000377348 NDUFA6P56556 154 aa8.5□□□□□ -1.05
VPS28-202ENST00000377348 SEC11AP67812 179 aa8.5□□□□□ -1.05
VPS28-202ENST00000377348 SPACA4Q8TDM5 124 aa8.5□□□□□ -1.05
VPS28-202ENST00000377348 A0A087WYN8 130 aa8.49□□□□□ -1.05
VPS28-202ENST00000377348 TINCRA0A1B0GVN0 87 aa8.49□□□□□ -1.05
VPS28-202ENST00000377348 FAM229AH3BQW9 127 aa8.49□□□□□ -1.05
VPS28-202ENST00000377348 MAJINQ3KP22 176 aa8.49□□□□□ -1.05
VPS28-202ENST00000377348 UNQ6190/PRO20217Q6UXQ8 127 aa8.49□□□□□ -1.05
VPS28-202ENST00000377348 LINC01561Q8N1V8 128 aa8.49□□□□□ -1.05
VPS28-202ENST00000377348 FAM19A2Q8N3H0 131 aa8.49□□□□□ -1.05
VPS28-202ENST00000377348 LINC00469Q8N7U9 141 aa8.49□□□□□ -1.05
VPS28-202ENST00000377348 TOMM7Q9P0U1 55 aa8.49□□□□□ -1.05
VPS28-202ENST00000377348 NDUFA1O15239 70 aa8.48□□□□□ -1.05
VPS28-202ENST00000377348 LINC00310P59036 64 aa8.48□□□□□ -1.05
VPS28-202ENST00000377348 C2orf82Q6UX34 121 aa8.48□□□□□ -1.05
VPS28-202ENST00000377348 LOC107984640A0A0U1RRK4 108 aa8.47□□□□□ -1.05
VPS28-202ENST00000377348 HSBP1O75506 76 aa8.47□□□□□ -1.05
VPS28-202ENST00000377348 SERF1AO75920 110 aa8.47□□□□□ -1.05
VPS28-202ENST00000377348 ATP5LO75964 103 aa8.47□□□□□ -1.05
VPS28-202ENST00000377348 GAGE2BQ13066 116 aa8.47□□□□□ -1.05
VPS28-202ENST00000377348 PACRGQ96M98 296 aaPredicted RBP8.47□□□□□ -1.05
VPS28-202ENST00000377348 MRPL35Q9NZE8 188 aaKnown RBP8.47□□□□□ -1.05
VPS28-202ENST00000377348 C6orf48Q9UBA6 75 aa8.47□□□□□ -1.05
VPS28-202ENST00000377348 IGLV5-45A0A087WSX0 123 aa8.46□□□□□ -1.06
VPS28-202ENST00000377348 PTTG1IPP53801 180 aa8.46□□□□□ -1.06
VPS28-202ENST00000377348 RPL18AQ02543 176 aaKnown RBP8.46□□□□□ -1.06
VPS28-202ENST00000377348 SMIM1B2RUZ4 78 aa8.45□□□□□ -1.06
VPS28-202ENST00000377348 F8WDY8 70 aa8.45□□□□□ -1.06
VPS28-202ENST00000377348 NUPR1O60356 82 aa8.45□□□□□ -1.06
VPS28-202ENST00000377348 PRSS2P07478 247 aa8.45□□□□□ -1.06
VPS28-202ENST00000377348 SPINK8P0C7L1 97 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms