RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 Q96NJ1 140 aa3.48□□□□□ -1.85
SCN1A-202ENST00000375405 IGLV3-19P01714 112 aa3.47□□□□□ -1.85
SCN1A-202ENST00000375405 WFDC2Q14508 124 aa3.47□□□□□ -1.85
SCN1A-202ENST00000375405 C8orf87E5RJ46 101 aa3.47□□□□□ -1.85
SCN1A-202ENST00000375405 MUC6Q6W4X9 2439 aa3.47□□□□□ -1.85
SCN1A-202ENST00000375405 GRNP28799 593 aaKnown RBP3.47□□□□□ -1.85
SCN1A-202ENST00000375405 TDRG1Q3Y452 100 aa3.47□□□□□ -1.85
SCN1A-202ENST00000375405 KIF26AQ9ULI4 1882 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-202ENST00000375405 LTBP4Q8N2S1 1624 aa3.47□□□□□ -1.85
SCN1A-202ENST00000375405 A0A0D9SG42 100 aa3.47□□□□□ -1.85
SCN1A-202ENST00000375405 K7EN84 100 aa3.47□□□□□ -1.85
SCN1A-202ENST00000375405 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-202ENST00000375405 MSRB1Q9NZV6 116 aa3.47□□□□□ -1.85
SCN1A-202ENST00000375405 IGLV3-21P80748 117 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-202ENST00000375405 LINC00308Q8TCZ7 52 aa3.47□□□□□ -1.85
SCN1A-202ENST00000375405 BBC3Q96PG8 261 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-202ENST00000375405 IGLV6-57P01721 117 aa3.46□□□□□ -1.85
SCN1A-202ENST00000375405 PLXNA2O75051 1894 aa3.46□□□□□ -1.86
SCN1A-202ENST00000375405 RNASE8Q8TDE3 154 aaKnown RBP3.46□□□□□ -1.86
SCN1A-202ENST00000375405 SIPA1L1O43166 1804 aa3.46□□□□□ -1.86
SCN1A-202ENST00000375405 LINC00173Q6ZV60 143 aa3.46□□□□□ -1.86
SCN1A-202ENST00000375405 Q6P435 159 aa3.46□□□□□ -1.86
SCN1A-202ENST00000375405 PTH2Q96A98 100 aa3.46□□□□□ -1.86
SCN1A-202ENST00000375405 VWCEQ96DN2 955 aa3.46□□□□□ -1.86
SCN1A-202ENST00000375405 RITA1Q96K30 269 aa3.46□□□□□ -1.86
SCN1A-202ENST00000375405 NUP210Q8TEM1 1887 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-202ENST00000375405 EIF4EBP1Q13541 118 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-202ENST00000375405 MOBPQ13875 183 aa3.46□□□□□ -1.86
SCN1A-202ENST00000375405 C10orf99Q6UWK7 81 aa3.46□□□□□ -1.86
SCN1A-202ENST00000375405 TMEM14EPQ6UXP3 125 aa3.46□□□□□ -1.86
SCN1A-202ENST00000375405 C6orf48Q9UBA6 75 aa3.46□□□□□ -1.86
SCN1A-202ENST00000375405 COL18A1P39060 1754 aa3.46□□□□□ -1.86
SCN1A-202ENST00000375405 COA6Q5JTJ3 125 aaKnown RBP3.45□□□□□ -1.86
SCN1A-202ENST00000375405 MRPS36P82909 103 aaKnown RBP3.45□□□□□ -1.86
SCN1A-202ENST00000375405 A8MZ25 164 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 LINC00467Q9BRT7 94 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 TNS1Q9HBL0 1735 aaKnown RBP3.45□□□□□ -1.86
SCN1A-202ENST00000375405 EPG5Q9HCE0 2579 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 TRAV22A0A0B4J277 110 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 BRI3O95415 125 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 CCDC140Q96MF4 163 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 NAV2Q8IVL1 2488 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 IGLC1P0CG04 106 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 YPEL4Q96NS1 127 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 COL4A6Q14031 1691 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 C19orf84I3L1E1 186 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 ATP5EP2Q5VTU8 51 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 NUPR1O60356 82 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 LINC00313P59037 77 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 NCOR1P1Q9H4R4 102 aa3.45□□□□□ -1.86
SCN1A-202ENST00000375405 COX6A2Q02221 97 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 LYPD5Q6UWN5 251 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 RBM12B-AS1Q9P1G2 102 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 ALPK3Q96L96 1907 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 A0A087WSZ3 146 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 Q6ZTC4 211 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 COL5A3P25940 1745 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-202ENST00000375405 CAMK2N1Q7Z7J9 78 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 KIAA1671Q9BY89 1806 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 IGLV5-37A0A075B6J1 123 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 TRBV6-8A0A0A6YYG3 113 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 C1orf64Q8NEQ6 169 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 NRXN2Q9P2S2 1712 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 KIAA1549LQ6ZVL6 1849 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 CHTF8P0CG12 524 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 TP53TG3Q9ULZ0 132 aa3.44□□□□□ -1.86
SCN1A-202ENST00000375405 PRAC2D3DTV9 90 aa3.43□□□□□ -1.86
SCN1A-202ENST00000375405 A0A087WVE0 104 aa3.43□□□□□ -1.86
SCN1A-202ENST00000375405 EPM2AB3EWF7 344 aa3.43□□□□□ -1.86
SCN1A-202ENST00000375405 Q8N7P7 452 aa3.43□□□□□ -1.86
SCN1A-202ENST00000375405 COL4A5P29400 1685 aa3.43□□□□□ -1.86
SCN1A-202ENST00000375405 TLX1NBP0CAT3 122 aa3.43□□□□□ -1.86
SCN1A-202ENST00000375405 RSPO1Q2MKA7 263 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-202ENST00000375405 FLVCR1-AS1Q8TAF5 88 aa3.43□□□□□ -1.86
SCN1A-202ENST00000375405 TTTY13Q9BZ97 58 aa3.43□□□□□ -1.86
SCN1A-202ENST00000375405 NHSL1Q5SYE7 1610 aa3.43□□□□□ -1.86
SCN1A-202ENST00000375405 C11orf86A6NJI1 115 aa3.43□□□□□ -1.86
SCN1A-202ENST00000375405 TOMM6Q96B49 74 aa3.43□□□□□ -1.86
SCN1A-202ENST00000375405 WIPF1O43516 503 aa3.42□□□□□ -1.86
SCN1A-202ENST00000375405 TRAV7A0A075B6U4 112 aa3.42□□□□□ -1.86
SCN1A-202ENST00000375405 PLA2G5P39877 138 aa3.42□□□□□ -1.86
SCN1A-202ENST00000375405 WT1-ASQ06250 92 aa3.42□□□□□ -1.86
SCN1A-202ENST00000375405 TP73-AS1Q9UF72 201 aa3.42□□□□□ -1.86
SCN1A-202ENST00000375405 LENEPQ9Y5L5 61 aa3.42□□□□□ -1.86
SCN1A-202ENST00000375405 C15orf65H3BRN8 121 aa3.42□□□□□ -1.86
SCN1A-202ENST00000375405 FXYD2P54710 66 aa3.42□□□□□ -1.86
SCN1A-202ENST00000375405 IGLV5-39A0A0G2JS06 123 aa3.41□□□□□ -1.86
SCN1A-202ENST00000375405 C17orf58Q2M2W7 97 aa3.41□□□□□ -1.86
SCN1A-202ENST00000375405 LELP1Q5T871 98 aa3.41□□□□□ -1.86
SCN1A-202ENST00000375405 IBA57-AS1B1ANH7 110 aa3.41□□□□□ -1.86
SCN1A-202ENST00000375405 IGLV3-1P01715 115 aa3.41□□□□□ -1.86
SCN1A-202ENST00000375405 CD164L2Q6UWJ8 174 aa3.41□□□□□ -1.86
SCN1A-202ENST00000375405 ZFHX2Q9C0A1 2572 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-202ENST00000375405 ANKHD1Q8IWZ3 2542 aaKnown RBP3.41□□□□□ -1.86
SCN1A-202ENST00000375405 Q6ZR03 302 aa3.41□□□□□ -1.86
SCN1A-202ENST00000375405 Q6ZSV7 163 aa3.41□□□□□ -1.86
SCN1A-202ENST00000375405 C10orf91Q5T1B1 145 aa3.41□□□□□ -1.86
SCN1A-202ENST00000375405 LINC01600Q96MT4 127 aa3.41□□□□□ -1.86
SCN1A-202ENST00000375405 BDP1A6H8Y1 2624 aa3.4□□□□□ -1.86
SCN1A-202ENST00000375405 CXCL6P80162 114 aa3.4□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms