RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 C5orf38Q86SI9 138 aa15.01□□□□□ -0.01
UPF3A-202ENST00000375299 Q6ZTI0 123 aa15□□□□□ -0.01
UPF3A-202ENST00000375299 ODF3L2Q3SX64 289 aa15□□□□□ -0.01
UPF3A-202ENST00000375299 ACACBO00763 2458 aa14.99□□□□□ -0.01
UPF3A-202ENST00000375299 UBE2L6O14933 153 aa14.99□□□□□ -0.01
UPF3A-202ENST00000375299 C9orf153Q5TBE3 101 aa14.99□□□□□ -0.01
UPF3A-202ENST00000375299 STHQ8IWL8 128 aa14.99□□□□□ -0.01
UPF3A-202ENST00000375299 LINC00337Q8N6G1 96 aa14.99□□□□□ -0.01
UPF3A-202ENST00000375299 CENPEQ02224 2701 aa14.99□□□□□ -0.01
UPF3A-202ENST00000375299 MIR7-3HGQ8N6C7 128 aa14.99□□□□□ -0.01
UPF3A-202ENST00000375299 UQCRQO14949 82 aa14.98□□□□□ -0.01
UPF3A-202ENST00000375299 PRB1P04280 392 aa14.98□□□□□ -0.01
UPF3A-202ENST00000375299 COX7B2Q8TF08 81 aa14.98□□□□□ -0.01
UPF3A-202ENST00000375299 OVOL2Q9BRP0 275 aa14.98□□□□□ -0.01
UPF3A-202ENST00000375299 TMEM243Q9BU79 118 aa14.98□□□□□ -0.01
UPF3A-202ENST00000375299 CR1P17927 2039 aa14.97□□□□□ -0.01
UPF3A-202ENST00000375299 IGKV2-28A0A075B6P5 120 aa14.97□□□□□ -0.01
UPF3A-202ENST00000375299 IGKV2D-28P01615 120 aa14.97□□□□□ -0.01
UPF3A-202ENST00000375299 SND1-IT1Q9HBX3 110 aa14.97□□□□□ -0.01
UPF3A-202ENST00000375299 LINC00526Q96FQ7 95 aa14.95□□□□□ -0.02
UPF3A-202ENST00000375299 FAM208BQ5VWN6 2430 aa14.95□□□□□ -0.02
UPF3A-202ENST00000375299 DNAL4O96015 105 aa14.95□□□□□ -0.02
UPF3A-202ENST00000375299 KRTAP10-9P60411 292 aa14.95□□□□□ -0.02
UPF3A-202ENST00000375299 A0A087WYN8 130 aa14.93□□□□□ -0.02
UPF3A-202ENST00000375299 SMIM11BQ8TCY0 68 aa14.93□□□□□ -0.02
UPF3A-202ENST00000375299 TOMM7Q9P0U1 55 aa14.93□□□□□ -0.02
UPF3A-202ENST00000375299 ZNF462Q96JM2 2506 aa14.92□□□□□ -0.02
UPF3A-202ENST00000375299 TEX15Q9BXT5 2789 aa14.92□□□□□ -0.02
UPF3A-202ENST00000375299 LRRK2Q5S007 2527 aa14.92□□□□□ -0.02
UPF3A-202ENST00000375299 TRAV25A0A0B4J276 109 aa14.91□□□□□ -0.02
UPF3A-202ENST00000375299 LINC00158P58513 81 aa14.91□□□□□ -0.02
UPF3A-202ENST00000375299 NOP10Q9NPE3 64 aaKnown RBP14.91□□□□□ -0.02
UPF3A-202ENST00000375299 HIST1H4AP62805 103 aaKnown RBP14.91□□□□□ -0.02
UPF3A-202ENST00000375299 UBR5O95071 2799 aaPredicted RBP14.91□□□□□ -0.02
UPF3A-202ENST00000375299 H0YGX0 51 aa14.9□□□□□ -0.02
UPF3A-202ENST00000375299 COX7CP15954 63 aa14.9□□□□□ -0.02
UPF3A-202ENST00000375299 CCL18P55774 89 aa14.9□□□□□ -0.02
UPF3A-202ENST00000375299 C9orf129Q5T035 196 aaKnown RBP14.9□□□□□ -0.02
UPF3A-202ENST00000375299 ZFYVE26Q68DK2 2539 aa14.9□□□□□ -0.02
UPF3A-202ENST00000375299 PTPN13Q12923 2485 aa14.89□□□□□ -0.03
UPF3A-202ENST00000375299 BBC3Q96PG8 261 aaPredicted RBP14.89□□□□□ -0.03
UPF3A-202ENST00000375299 LOC100131303A0A0U1RQF7 123 aa14.88□□□□□ -0.03
UPF3A-202ENST00000375299 DEFB113Q30KQ7 82 aa14.88□□□□□ -0.03
UPF3A-202ENST00000375299 C14orf132Q9NPU4 83 aa14.88□□□□□ -0.03
UPF3A-202ENST00000375299 IGKV3OR2-268A0A0C4DH90 116 aa14.88□□□□□ -0.03
UPF3A-202ENST00000375299 C2orf48Q96LS8 159 aa14.88□□□□□ -0.03
UPF3A-202ENST00000375299 OBSCN-AS1Q96MR7 158 aa14.88□□□□□ -0.03
UPF3A-202ENST00000375299 USP24Q9UPU5 2620 aa14.87□□□□□ -0.03
UPF3A-202ENST00000375299 ATOX1O00244 68 aa14.87□□□□□ -0.03
UPF3A-202ENST00000375299 LRRC75A-AS1Q8N1F1 130 aa14.87□□□□□ -0.03
UPF3A-202ENST00000375299 IBA57-AS1B1ANH7 110 aa14.86□□□□□ -0.03
UPF3A-202ENST00000375299 KLK5Q9Y337 293 aaPredicted RBP14.85□□□□□ -0.03
UPF3A-202ENST00000375299 NAV2Q8IVL1 2488 aa14.85□□□□□ -0.03
UPF3A-202ENST00000375299 ABCA12Q86UK0 2595 aa14.85□□□□□ -0.03
UPF3A-202ENST00000375299 IGHV3OR16-9A0A0B4J2B5 98 aa14.84□□□□□ -0.03
UPF3A-202ENST00000375299 TRBV6-4A0A1B0GX49 114 aa14.84□□□□□ -0.03
UPF3A-202ENST00000375299 IGLV4-60A0A075B6I1 120 aa14.84□□□□□ -0.03
UPF3A-202ENST00000375299 TRGV2A0A075B6R0 118 aa14.84□□□□□ -0.03
UPF3A-202ENST00000375299 LECT2O14960 151 aa14.84□□□□□ -0.03
UPF3A-202ENST00000375299 PLAC8L1A1L4L8 177 aa14.83□□□□□ -0.03
UPF3A-202ENST00000375299 Q6JHZ5 121 aa14.83□□□□□ -0.03
UPF3A-202ENST00000375299 MYO9AB2RTY4 2548 aa14.83□□□□□ -0.04
UPF3A-202ENST00000375299 C16orf74Q96GX8 76 aa14.83□□□□□ -0.04
UPF3A-202ENST00000375299 CRYGAP11844 174 aa14.82□□□□□ -0.04
UPF3A-202ENST00000375299 A0A087WZ39 114 aa14.82□□□□□ -0.04
UPF3A-202ENST00000375299 PFN2P35080 140 aa14.82□□□□□ -0.04
UPF3A-202ENST00000375299 LINC00846Q9NV44 126 aa14.82□□□□□ -0.04
UPF3A-202ENST00000375299 ZNF843Q8N446 348 aa14.81□□□□□ -0.04
UPF3A-202ENST00000375299 PAX4O43316 350 aa14.81□□□□□ -0.04
UPF3A-202ENST00000375299 RPL18AQ02543 176 aaKnown RBP14.81□□□□□ -0.04
UPF3A-202ENST00000375299 IGKV3D-7A0A0C4DH55 119 aa14.8□□□□□ -0.04
UPF3A-202ENST00000375299 GIG44P09565 113 aaPredicted RBP14.8□□□□□ -0.04
UPF3A-202ENST00000375299 TRBV6-8A0A0A6YYG3 113 aa14.8□□□□□ -0.04
UPF3A-202ENST00000375299 TRGV4A0A0C4DH28 118 aa14.8□□□□□ -0.04
UPF3A-202ENST00000375299 OR13C6PQ8NH95 151 aa14.8□□□□□ -0.04
UPF3A-202ENST00000375299 KRTAP1-3Q8IUG1 177 aa14.79□□□□□ -0.04
UPF3A-202ENST00000375299 NCR3O14931 201 aa14.78□□□□□ -0.04
UPF3A-202ENST00000375299 A0A1W2PRX2 142 aa14.77□□□□□ -0.04
UPF3A-202ENST00000375299 LY6G6DO95868 133 aa14.77□□□□□ -0.04
UPF3A-202ENST00000375299 CFAP161Q6P656 301 aa14.77□□□□□ -0.04
UPF3A-202ENST00000375299 AKAP9Q99996 3911 aa14.77□□□□□ -0.05
UPF3A-202ENST00000375299 SLPIP03973 132 aa14.76□□□□□ -0.05
UPF3A-202ENST00000375299 CCL24O00175 119 aa14.76□□□□□ -0.05
UPF3A-202ENST00000375299 C11orf44Q8N8P7 122 aa14.76□□□□□ -0.05
UPF3A-202ENST00000375299 CHD6Q8TD26 2715 aa14.75□□□□□ -0.05
UPF3A-202ENST00000375299 ZNF469Q96JG9 3925 aaPredicted RBP14.75□□□□□ -0.05
UPF3A-202ENST00000375299 TMEM86BQ8N661 226 aa14.75□□□□□ -0.05
UPF3A-202ENST00000375299 ORMDL1Q9P0S3 153 aa14.75□□□□□ -0.05
UPF3A-202ENST00000375299 A0A1B0GX51 115 aa14.75□□□□□ -0.05
UPF3A-202ENST00000375299 hADV29S1A0JD25 119 aa14.74□□□□□ -0.05
UPF3A-202ENST00000375299 APCP25054 2843 aa14.74□□□□□ -0.05
UPF3A-202ENST00000375299 FHL2Q14192 279 aa14.74□□□□□ -0.05
UPF3A-202ENST00000375299 LINC00959A0A1B0GUT2 108 aa14.73□□□□□ -0.05
UPF3A-202ENST00000375299 LOC107984640A0A0U1RRK4 108 aa14.73□□□□□ -0.05
UPF3A-202ENST00000375299 J3KT08 172 aa14.73□□□□□ -0.05
UPF3A-202ENST00000375299 SS18Q15532 418 aa14.73□□□□□ -0.05
UPF3A-202ENST00000375299 C6orf226Q5I0X4 101 aa14.73□□□□□ -0.05
UPF3A-202ENST00000375299 C11orf68Q9H3H3 251 aaKnown RBP14.73□□□□□ -0.05
UPF3A-202ENST00000375299 A0A087WVE0 104 aa14.72□□□□□ -0.05
UPF3A-202ENST00000375299 RPL35AP18077 110 aaKnown RBP14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms