RNA–Protein interactions for RNA: ENST00000357517.6

PCDH1-202, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 3,307 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-202ENST00000357517 UBL5Q9BZL1 73 aa7.53□□□□□ -1.2
PCDH1-202ENST00000357517 MED14OSP0DP75 135 aa7.53□□□□□ -1.2
PCDH1-202ENST00000357517 C11orf72Q8NBR9 251 aa7.53□□□□□ -1.2
PCDH1-202ENST00000357517 FAM110DQ8TAY7 271 aaPredicted RBP7.53□□□□□ -1.2
PCDH1-202ENST00000357517 COPS9Q8WXC6 57 aa7.53□□□□□ -1.2
PCDH1-202ENST00000357517 SONP18583 2426 aaKnown RBP7.52□□□□□ -1.2
PCDH1-202ENST00000357517 DAD1P61803 113 aa7.52□□□□□ -1.21
PCDH1-202ENST00000357517 C4orf48Q5BLP8 95 aa7.52□□□□□ -1.21
PCDH1-202ENST00000357517 TRAV13-2A0A0B4J235 113 aa7.52□□□□□ -1.21
PCDH1-202ENST00000357517 C19orf84I3L1E1 186 aa7.51□□□□□ -1.21
PCDH1-202ENST00000357517 Q6ZSN1 163 aa7.51□□□□□ -1.21
PCDH1-202ENST00000357517 ORMDL1Q9P0S3 153 aa7.51□□□□□ -1.21
PCDH1-202ENST00000357517 EPM2AB3EWF7 344 aa7.5□□□□□ -1.21
PCDH1-202ENST00000357517 BLCAPP62952 87 aa7.5□□□□□ -1.21
PCDH1-202ENST00000357517 MRPL55Q7Z7F7 128 aaKnown RBP7.5□□□□□ -1.21
PCDH1-202ENST00000357517 SAA4P35542 130 aa7.5□□□□□ -1.21
PCDH1-202ENST00000357517 CD164Q04900 197 aa7.5□□□□□ -1.21
PCDH1-202ENST00000357517 COL27A1Q8IZC6 1860 aaPredicted RBP7.5□□□□□ -1.21
PCDH1-202ENST00000357517 IGKV2-28A0A075B6P5 120 aa7.49□□□□□ -1.21
PCDH1-202ENST00000357517 IGHV3OR16-12A0A075B7B8 117 aa7.49□□□□□ -1.21
PCDH1-202ENST00000357517 IGKV2D-28P01615 120 aa7.49□□□□□ -1.21
PCDH1-202ENST00000357517 LINC00242Q5T6M2 205 aa7.49□□□□□ -1.21
PCDH1-202ENST00000357517 MINOS1Q5TGZ0 78 aa7.49□□□□□ -1.21
PCDH1-202ENST00000357517 TM2D3Q9BRN9 247 aa7.49□□□□□ -1.21
PCDH1-202ENST00000357517 CHCHD7Q9BUK0 85 aa7.49□□□□□ -1.21
PCDH1-202ENST00000357517 ANKRD11Q6UB99 2663 aaPredicted RBP7.49□□□□□ -1.21
PCDH1-202ENST00000357517 KLLNB2CW77 178 aa7.48□□□□□ -1.21
PCDH1-202ENST00000357517 SMIM1B2RUZ4 78 aa7.48□□□□□ -1.21
PCDH1-202ENST00000357517 TRAV7A0A075B6U4 112 aa7.48□□□□□ -1.21
PCDH1-202ENST00000357517 PRR3P79522 188 aaKnown RBP7.48□□□□□ -1.21
PCDH1-202ENST00000357517 C19orf54Q5BKX5 351 aa7.47□□□□□ -1.21
PCDH1-202ENST00000357517 LINC01560Q8TB33 94 aa7.47□□□□□ -1.21
PCDH1-202ENST00000357517 LY6EQ16553 131 aa7.47□□□□□ -1.21
PCDH1-202ENST00000357517 CRYBG3Q68DQ2 2970 aa7.47□□□□□ -1.21
PCDH1-202ENST00000357517 TLN1Q9Y490 2541 aaKnown RBP7.46□□□□□ -1.21
PCDH1-202ENST00000357517 IGHV3-53P01767 116 aa7.46□□□□□ -1.21
PCDH1-202ENST00000357517 M0R2N4 97 aa7.46□□□□□ -1.22
PCDH1-202ENST00000357517 LAMTOR3Q9UHA4 124 aa7.46□□□□□ -1.22
PCDH1-202ENST00000357517 PSPHP1O15172 72 aa7.45□□□□□ -1.22
PCDH1-202ENST00000357517 CFHR3Q02985 330 aa7.45□□□□□ -1.22
PCDH1-202ENST00000357517 APRG1Q8IVJ8 170 aa7.45□□□□□ -1.22
PCDH1-202ENST00000357517 STHQ8IWL8 128 aa7.45□□□□□ -1.22
PCDH1-202ENST00000357517 H0YGX0 51 aa7.45□□□□□ -1.22
PCDH1-202ENST00000357517 CCL18P55774 89 aa7.45□□□□□ -1.22
PCDH1-202ENST00000357517 Q8N3U1 123 aa7.45□□□□□ -1.22
PCDH1-202ENST00000357517 PRO3102Q9H379 93 aa7.45□□□□□ -1.22
PCDH1-202ENST00000357517 MIFP14174 115 aa7.44□□□□□ -1.22
PCDH1-202ENST00000357517 OVOL2Q9BRP0 275 aa7.44□□□□□ -1.22
PCDH1-202ENST00000357517 Q8N6K4 173 aa7.43□□□□□ -1.22
PCDH1-202ENST00000357517 COX7B2Q8TF08 81 aa7.43□□□□□ -1.22
PCDH1-202ENST00000357517 SETD2Q9BYW2 2564 aaPredicted RBP7.43□□□□□ -1.22
PCDH1-202ENST00000357517 KLKP1Q107X0 134 aa7.43□□□□□ -1.22
PCDH1-202ENST00000357517 MUC6Q6W4X9 2439 aa7.43□□□□□ -1.22
PCDH1-202ENST00000357517 A8MTW9 85 aa7.42□□□□□ -1.22
PCDH1-202ENST00000357517 Q8N9L7 120 aa7.42□□□□□ -1.22
PCDH1-202ENST00000357517 JMJD1CQ15652 2540 aa7.42□□□□□ -1.22
PCDH1-202ENST00000357517 ITPR1Q14643 2758 aa7.42□□□□□ -1.22
PCDH1-202ENST00000357517 LINC01547P58512 204 aaPredicted RBP7.42□□□□□ -1.22
PCDH1-202ENST00000357517 ODF3BA8MYP8 253 aa7.42□□□□□ -1.22
PCDH1-202ENST00000357517 ZNF843Q8N446 348 aa7.42□□□□□ -1.22
PCDH1-202ENST00000357517 IGLV5-39A0A0G2JS06 123 aa7.41□□□□□ -1.22
PCDH1-202ENST00000357517 ZFP36P26651 326 aaKnown RBP7.41□□□□□ -1.22
PCDH1-202ENST00000357517 PRR4Q16378 134 aa7.41□□□□□ -1.22
PCDH1-202ENST00000357517 NDUFA4O00483 81 aa7.4□□□□□ -1.22
PCDH1-202ENST00000357517 KHDC1LQ5JSQ8 128 aa7.4□□□□□ -1.22
PCDH1-202ENST00000357517 BRD3OSQ6XYD6 125 aa7.4□□□□□ -1.22
PCDH1-202ENST00000357517 OBSCN-AS1Q96MR7 158 aa7.4□□□□□ -1.22
PCDH1-202ENST00000357517 FN1P02751 2386 aaKnown RBP7.4□□□□□ -1.22
PCDH1-202ENST00000357517 ATP5EP2Q5VTU8 51 aa7.4□□□□□ -1.22
PCDH1-202ENST00000357517 TRBV10-1A0A0K0K1A3 114 aa7.4□□□□□ -1.23
PCDH1-202ENST00000357517 PLAC8L1A1L4L8 177 aa7.4□□□□□ -1.23
PCDH1-202ENST00000357517 JMJD7-PLA2G4BH0Y9G9 81 aa7.4□□□□□ -1.23
PCDH1-202ENST00000357517 PF4P02776 101 aa7.4□□□□□ -1.23
PCDH1-202ENST00000357517 NANOS2P60321 138 aaKnown RBP7.4□□□□□ -1.23
PCDH1-202ENST00000357517 C11orf45Q8TAV5 145 aa7.4□□□□□ -1.23
PCDH1-202ENST00000357517 ANKRD17O75179 2603 aaKnown RBP7.39□□□□□ -1.23
PCDH1-202ENST00000357517 PRR15Q8IV56 129 aa7.39□□□□□ -1.23
PCDH1-202ENST00000357517 TMEM254Q8TBM7 123 aa7.39□□□□□ -1.23
PCDH1-202ENST00000357517 MYO9AB2RTY4 2548 aa7.39□□□□□ -1.23
PCDH1-202ENST00000357517 GRNP28799 593 aaKnown RBP7.38□□□□□ -1.23
PCDH1-202ENST00000357517 Q6ZRU5 148 aa7.38□□□□□ -1.23
PCDH1-202ENST00000357517 ATRXP46100 2492 aa7.38□□□□□ -1.23
PCDH1-202ENST00000357517 Q6ZVQ6 151 aa7.38□□□□□ -1.23
PCDH1-202ENST00000357517 BBC3Q96PG8 261 aaPredicted RBP7.38□□□□□ -1.23
PCDH1-202ENST00000357517 UBE2L6O14933 153 aa7.37□□□□□ -1.23
PCDH1-202ENST00000357517 FUSP35637 526 aaKnown RBP eCLIP7.37□□□□□ -1.23
PCDH1-202ENST00000357517 NREPQ16612 68 aa7.37□□□□□ -1.23
PCDH1-202ENST00000357517 ESRGQ1W209 222 aa7.37□□□□□ -1.23
PCDH1-202ENST00000357517 C6orf223Q8N319 242 aa7.37□□□□□ -1.23
PCDH1-202ENST00000357517 IGLV5-45A0A087WSX0 123 aa7.37□□□□□ -1.23
PCDH1-202ENST00000357517 A8MU10 97 aa7.37□□□□□ -1.23
PCDH1-202ENST00000357517 TMEM256-PLSCR3K7ERE1 68 aa7.37□□□□□ -1.23
PCDH1-202ENST00000357517 CR1P17927 2039 aa7.36□□□□□ -1.23
PCDH1-202ENST00000357517 ADORA2A-AS1P86434 159 aa7.36□□□□□ -1.23
PCDH1-202ENST00000357517 Q8N814 137 aa7.36□□□□□ -1.23
PCDH1-202ENST00000357517 DEFB124Q8NES8 71 aa7.36□□□□□ -1.23
PCDH1-202ENST00000357517 VPS13CQ709C8 3753 aa7.36□□□□□ -1.23
PCDH1-202ENST00000357517 K7EQG2 157 aa7.36□□□□□ -1.23
PCDH1-202ENST00000357517 RBM12B-AS1Q9P1G2 102 aa7.36□□□□□ -1.23
PCDH1-202ENST00000357517 PTPN13Q12923 2485 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms