RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 TRGV4A0A0C4DH28 118 aa5.73□□□□□ -1.49
CD44-205ENST00000352818 IGHV3-38A0A0C4DH36 116 aa5.73□□□□□ -1.49
CD44-205ENST00000352818 IGKV2-29A2NJV5 120 aaPredicted RBP5.73□□□□□ -1.49
CD44-205ENST00000352818 ZNF815PA8K554 130 aa5.73□□□□□ -1.49
CD44-205ENST00000352818 EMP1P54849 157 aa5.73□□□□□ -1.49
CD44-205ENST00000352818 FHL2Q14192 279 aa5.73□□□□□ -1.49
CD44-205ENST00000352818 TMEM170BQ5T4T1 132 aa5.73□□□□□ -1.49
CD44-205ENST00000352818 NTM-AS1Q6ZSK4 140 aa5.73□□□□□ -1.49
CD44-205ENST00000352818 Q6ZUT4 128 aa5.73□□□□□ -1.49
CD44-205ENST00000352818 PLEKHB2Q96CS7 222 aa5.73□□□□□ -1.49
CD44-205ENST00000352818 OPRPNQ99935 248 aaPredicted RBP5.73□□□□□ -1.49
CD44-205ENST00000352818 IGLV5-45A0A087WSX0 123 aa5.72□□□□□ -1.49
CD44-205ENST00000352818 A0A0J9YXV3 536 aa5.72□□□□□ -1.49
CD44-205ENST00000352818 A0A1B0GWB2 263 aa5.72□□□□□ -1.49
CD44-205ENST00000352818 GAGE12JA6NER3 117 aa5.72□□□□□ -1.49
CD44-205ENST00000352818 C16orf90A8MZG2 172 aa5.72□□□□□ -1.49
CD44-205ENST00000352818 J3QQQ9 107 aa5.72□□□□□ -1.49
CD44-205ENST00000352818 UBE2D1P51668 147 aa5.72□□□□□ -1.49
CD44-205ENST00000352818 TIRAPP58753 221 aa5.72□□□□□ -1.49
CD44-205ENST00000352818 GAGE4Q13068 117 aa5.72□□□□□ -1.49
CD44-205ENST00000352818 GAGE5Q13069 117 aa5.72□□□□□ -1.49
CD44-205ENST00000352818 GAGE13Q4V321 117 aa5.72□□□□□ -1.49
CD44-205ENST00000352818 OR5A1Q8NGJ0 315 aa5.72□□□□□ -1.49
CD44-205ENST00000352818 TMEM243Q9BU79 118 aa5.72□□□□□ -1.49
CD44-205ENST00000352818 SPANXB1Q9NS25 103 aaPredicted RBP5.72□□□□□ -1.49
CD44-205ENST00000352818 C9orf118A6NHY6 69 aa5.71□□□□□ -1.5
CD44-205ENST00000352818 MIFP14174 115 aa5.71□□□□□ -1.5
CD44-205ENST00000352818 LGALS3P17931 250 aaKnown RBP5.71□□□□□ -1.5
CD44-205ENST00000352818 GCSHP23434 173 aa5.71□□□□□ -1.5
CD44-205ENST00000352818 FXYD2P54710 66 aa5.71□□□□□ -1.5
CD44-205ENST00000352818 TSPEAR-AS2P59090 65 aa5.71□□□□□ -1.5
CD44-205ENST00000352818 RNF183Q96D59 192 aa5.71□□□□□ -1.5
CD44-205ENST00000352818 A0A0J9YY99 117 aa5.7□□□□□ -1.5
CD44-205ENST00000352818 EPM2AB3EWF7 344 aa5.7□□□□□ -1.5
CD44-205ENST00000352818 SMIM13P0DJ93 91 aa5.7□□□□□ -1.5
CD44-205ENST00000352818 UBE2V1Q13404 147 aa5.7□□□□□ -1.5
CD44-205ENST00000352818 DGAT2L7PQ6IED9 249 aa5.7□□□□□ -1.5
CD44-205ENST00000352818 SCGB1D4Q6XE38 83 aa5.7□□□□□ -1.5
CD44-205ENST00000352818 HIST1H4GQ99525 98 aa5.7□□□□□ -1.5
CD44-205ENST00000352818 LRP2P98164 4655 aa5.69□□□□□ -1.5
CD44-205ENST00000352818 LRP1Q07954 4544 aaKnown RBP5.69□□□□□ -1.5
CD44-205ENST00000352818 IGHV1-58A0A0C4DH39 117 aa5.69□□□□□ -1.5
CD44-205ENST00000352818 TEX48A0A1B0GUV7 120 aa5.69□□□□□ -1.5
CD44-205ENST00000352818 TMEM238LA0A1B0GVL6 79 aa5.69□□□□□ -1.5
CD44-205ENST00000352818 A6NJY4 79 aa5.69□□□□□ -1.5
CD44-205ENST00000352818 HERVK_113P63121 156 aa5.69□□□□□ -1.5
CD44-205ENST00000352818 DEFB135Q30KP9 77 aa5.69□□□□□ -1.5
CD44-205ENST00000352818 Q6ZVH6 145 aa5.69□□□□□ -1.5
CD44-205ENST00000352818 Q8NAQ8 132 aa5.69□□□□□ -1.5
CD44-205ENST00000352818 PRO0255Q9UI72 69 aa5.69□□□□□ -1.5
CD44-205ENST00000352818 APLNQ9ULZ1 77 aa5.69□□□□□ -1.5
CD44-205ENST00000352818 TRBV6-8A0A0A6YYG3 113 aa5.68□□□□□ -1.5
CD44-205ENST00000352818 IGHV4-28A0A0C4DH34 117 aa5.68□□□□□ -1.5
CD44-205ENST00000352818 LOC100131303A0A0U1RQF7 123 aa5.68□□□□□ -1.5
CD44-205ENST00000352818 M0R2N4 97 aa5.68□□□□□ -1.5
CD44-205ENST00000352818 UBE2L6O14933 153 aa5.68□□□□□ -1.5
CD44-205ENST00000352818 IGHV3-30-3P0DP02 117 aa5.68□□□□□ -1.5
CD44-205ENST00000352818 PTTG1IPP53801 180 aa5.68□□□□□ -1.5
CD44-205ENST00000352818 FAM222AQ5U5X8 452 aa5.68□□□□□ -1.5
CD44-205ENST00000352818 AMMECR1LQ6DCA0 310 aa5.68□□□□□ -1.5
CD44-205ENST00000352818 TMEM101Q96IK0 257 aa5.68□□□□□ -1.5
CD44-205ENST00000352818 VSIG2Q96IQ7 327 aa5.68□□□□□ -1.5
CD44-205ENST00000352818 GEMIN7Q9H840 131 aaKnown RBP5.68□□□□□ -1.5
CD44-205ENST00000352818 CDC42SE2Q9NRR3 84 aa5.68□□□□□ -1.5
CD44-205ENST00000352818 CBY1Q9Y3M2 126 aa5.68□□□□□ -1.5
CD44-205ENST00000352818 TRAV26-1A0A087WT03 109 aa5.67□□□□□ -1.5
CD44-205ENST00000352818 IGLV5-39A0A0G2JS06 123 aa5.67□□□□□ -1.5
CD44-205ENST00000352818 TMEM238C9JI98 176 aa5.67□□□□□ -1.5
CD44-205ENST00000352818 K7EP13 123 aa5.67□□□□□ -1.5
CD44-205ENST00000352818 DEFB130BP0DP73 79 aa5.67□□□□□ -1.5
CD44-205ENST00000352818 DEFB130AP0DP74 79 aa5.67□□□□□ -1.5
CD44-205ENST00000352818 VAMP3Q15836 100 aa5.67□□□□□ -1.5
CD44-205ENST00000352818 C12orf74Q32Q52 190 aa5.67□□□□□ -1.5
CD44-205ENST00000352818 RNASE13Q5GAN3 156 aaKnown RBP5.67□□□□□ -1.5
CD44-205ENST00000352818 LINC00242Q5T6M2 205 aa5.67□□□□□ -1.5
CD44-205ENST00000352818 NHP2Q9NX24 153 aaKnown RBP5.67□□□□□ -1.5
CD44-205ENST00000352818 A0A0J9YXY3 114 aa5.66□□□□□ -1.5
CD44-205ENST00000352818 A0A1W2PPM0 123 aa5.66□□□□□ -1.5
CD44-205ENST00000352818 CCL25O15444 150 aa5.66□□□□□ -1.5
CD44-205ENST00000352818 TIMM17BO60830 172 aa5.66□□□□□ -1.5
CD44-205ENST00000352818 IGHV3-30P01768 117 aa5.66□□□□□ -1.5
CD44-205ENST00000352818 IGHV3-30-5P0DP03 117 aa5.66□□□□□ -1.5
CD44-205ENST00000352818 DAD1P61803 113 aa5.66□□□□□ -1.5
CD44-205ENST00000352818 SRSF9Q13242 221 aaKnown RBP eCLIP5.66□□□□□ -1.5
CD44-205ENST00000352818 C10orf126Q8N4M7 172 aa5.66□□□□□ -1.5
CD44-205ENST00000352818 ATP6V0E2Q8NHE4 81 aa5.66□□□□□ -1.5
CD44-205ENST00000352818 H3BUT2 72 aa5.65□□□□□ -1.5
CD44-205ENST00000352818 K7EP34 96 aa5.65□□□□□ -1.5
CD44-205ENST00000352818 NDUFA1O15239 70 aa5.65□□□□□ -1.5
CD44-205ENST00000352818 ATP5G1P05496 136 aa5.65□□□□□ -1.5
CD44-205ENST00000352818 SPART-AS1P0CW21 52 aa5.65□□□□□ -1.5
CD44-205ENST00000352818 GYPEP15421 78 aa5.65□□□□□ -1.5
CD44-205ENST00000352818 GTF2H5Q6ZYL4 71 aa5.65□□□□□ -1.5
CD44-205ENST00000352818 SPANXDQ9BXN6 97 aa5.65□□□□□ -1.5
CD44-205ENST00000352818 SPANXCQ9NY87 97 aa5.65□□□□□ -1.5
CD44-205ENST00000352818 CDKN2A-AS1Q9UH64 79 aa5.65□□□□□ -1.5
CD44-205ENST00000352818 NDUFA12Q9UI09 145 aa5.65□□□□□ -1.5
CD44-205ENST00000352818 TRAV8-3A0A0A6YYJ7 113 aa5.64□□□□□ -1.51
CD44-205ENST00000352818 A0A1B0GUV1 79 aa5.64□□□□□ -1.51
CD44-205ENST00000352818 SMIM1B2RUZ4 78 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms