RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 AKAP9Q99996 3911 aa7.89□□□□□ -1.15
SYNE1-202ENST00000347037 DEFB114Q30KQ6 69 aa7.89□□□□□ -1.15
SYNE1-202ENST00000347037 LINC00337Q8N6G1 96 aa7.89□□□□□ -1.15
SYNE1-202ENST00000347037 NOP10Q9NPE3 64 aaKnown RBP7.89□□□□□ -1.15
SYNE1-202ENST00000347037 C14orf132Q9NPU4 83 aa7.89□□□□□ -1.15
SYNE1-202ENST00000347037 A0A1W2PRX2 142 aa7.89□□□□□ -1.15
SYNE1-202ENST00000347037 ATP5G1P05496 136 aa7.89□□□□□ -1.15
SYNE1-202ENST00000347037 C22orf24Q9Y442 160 aa7.89□□□□□ -1.15
SYNE1-202ENST00000347037 A0A087WYN8 130 aa7.88□□□□□ -1.15
SYNE1-202ENST00000347037 PFN2P35080 140 aa7.88□□□□□ -1.15
SYNE1-202ENST00000347037 SDIM1Q6ZPB5 146 aa7.88□□□□□ -1.15
SYNE1-202ENST00000347037 C1orf158Q8N1D5 194 aa7.88□□□□□ -1.15
SYNE1-202ENST00000347037 TMEM243Q9BU79 118 aa7.88□□□□□ -1.15
SYNE1-202ENST00000347037 C11orf68Q9H3H3 251 aaKnown RBP7.88□□□□□ -1.15
SYNE1-202ENST00000347037 KLK5Q9Y337 293 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-202ENST00000347037 Q6YL49 198 aa7.88□□□□□ -1.15
SYNE1-202ENST00000347037 OR13C6PQ8NH95 151 aa7.88□□□□□ -1.15
SYNE1-202ENST00000347037 COX7B2Q8TF08 81 aa7.88□□□□□ -1.15
SYNE1-202ENST00000347037 LOC100131303A0A0U1RQF7 123 aa7.88□□□□□ -1.15
SYNE1-202ENST00000347037 CHD6Q8TD26 2715 aa7.87□□□□□ -1.15
SYNE1-202ENST00000347037 IGKV3D-7A0A0C4DH55 119 aa7.87□□□□□ -1.15
SYNE1-202ENST00000347037 FAM208BQ5VWN6 2430 aa7.87□□□□□ -1.15
SYNE1-202ENST00000347037 MYO18BQ8IUG5 2567 aa7.87□□□□□ -1.15
SYNE1-202ENST00000347037 TLN2Q9Y4G6 2542 aa7.87□□□□□ -1.15
SYNE1-202ENST00000347037 ACACBO00763 2458 aa7.87□□□□□ -1.15
SYNE1-202ENST00000347037 TRGV2A0A075B6R0 118 aa7.87□□□□□ -1.15
SYNE1-202ENST00000347037 UQCRQO14949 82 aa7.87□□□□□ -1.15
SYNE1-202ENST00000347037 ODF3L2Q3SX64 289 aa7.87□□□□□ -1.15
SYNE1-202ENST00000347037 SMIM11BQ8TCY0 68 aa7.87□□□□□ -1.15
SYNE1-202ENST00000347037 PPDPFQ9H3Y8 114 aa7.87□□□□□ -1.15
SYNE1-202ENST00000347037 C9orf129Q5T035 196 aaKnown RBP7.87□□□□□ -1.15
SYNE1-202ENST00000347037 BBC3Q96PG8 261 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-202ENST00000347037 CSDC2Q9Y534 153 aaKnown RBP7.87□□□□□ -1.15
SYNE1-202ENST00000347037 JMJD1CQ15652 2540 aa7.86□□□□□ -1.15
SYNE1-202ENST00000347037 RPL28P46779 137 aaKnown RBP7.86□□□□□ -1.15
SYNE1-202ENST00000347037 DSCR9P59020 149 aa7.86□□□□□ -1.15
SYNE1-202ENST00000347037 DOPEY1Q5JWR5 2465 aa7.86□□□□□ -1.15
SYNE1-202ENST00000347037 TENM4Q6N022 2769 aa7.86□□□□□ -1.15
SYNE1-202ENST00000347037 IGKV2-28A0A075B6P5 120 aa7.86□□□□□ -1.15
SYNE1-202ENST00000347037 TRBV10-1A0A0K0K1A3 114 aa7.86□□□□□ -1.15
SYNE1-202ENST00000347037 IGKV2D-28P01615 120 aa7.86□□□□□ -1.15
SYNE1-202ENST00000347037 FAM222AQ5U5X8 452 aa7.86□□□□□ -1.15
SYNE1-202ENST00000347037 SETD2Q9BYW2 2564 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-202ENST00000347037 PAX4O43316 350 aa7.86□□□□□ -1.15
SYNE1-202ENST00000347037 SLPIP03973 132 aa7.85□□□□□ -1.15
SYNE1-202ENST00000347037 C4orf3Q8WVX3 66 aa7.85□□□□□ -1.15
SYNE1-202ENST00000347037 J3QLI3 93 aa7.85□□□□□ -1.15
SYNE1-202ENST00000347037 LECT2O14960 151 aa7.85□□□□□ -1.15
SYNE1-202ENST00000347037 FAM19A3Q7Z5A8 133 aa7.85□□□□□ -1.15
SYNE1-202ENST00000347037 PF4P02776 101 aa7.85□□□□□ -1.15
SYNE1-202ENST00000347037 C5orf38Q86SI9 138 aa7.85□□□□□ -1.15
SYNE1-202ENST00000347037 PTPN13Q12923 2485 aa7.84□□□□□ -1.15
SYNE1-202ENST00000347037 NCR3O14931 201 aa7.84□□□□□ -1.15
SYNE1-202ENST00000347037 CXCL5P42830 114 aa7.84□□□□□ -1.15
SYNE1-202ENST00000347037 LINC00526Q96FQ7 95 aa7.84□□□□□ -1.15
SYNE1-202ENST00000347037 EPG5Q9HCE0 2579 aa7.84□□□□□ -1.15
SYNE1-202ENST00000347037 LOC107984640A0A0U1RRK4 108 aa7.84□□□□□ -1.16
SYNE1-202ENST00000347037 CCL18P55774 89 aa7.84□□□□□ -1.16
SYNE1-202ENST00000347037 TRGV4A0A0C4DH28 118 aa7.83□□□□□ -1.16
SYNE1-202ENST00000347037 SONP18583 2426 aaKnown RBP7.83□□□□□ -1.16
SYNE1-202ENST00000347037 COX7CP15954 63 aa7.83□□□□□ -1.16
SYNE1-202ENST00000347037 IGLV4-60A0A075B6I1 120 aa7.83□□□□□ -1.16
SYNE1-202ENST00000347037 OVOL2Q9BRP0 275 aa7.83□□□□□ -1.16
SYNE1-202ENST00000347037 PLA2G2AP14555 144 aa7.82□□□□□ -1.16
SYNE1-202ENST00000347037 RPL35AP18077 110 aaKnown RBP7.82□□□□□ -1.16
SYNE1-202ENST00000347037 TEX15Q9BXT5 2789 aa7.82□□□□□ -1.16
SYNE1-202ENST00000347037 A0A087WVE0 104 aa7.82□□□□□ -1.16
SYNE1-202ENST00000347037 hADV29S1A0JD25 119 aa7.82□□□□□ -1.16
SYNE1-202ENST00000347037 A0A1B0GX51 115 aa7.81□□□□□ -1.16
SYNE1-202ENST00000347037 IL17DQ8TAD2 202 aa7.81□□□□□ -1.16
SYNE1-202ENST00000347037 WFDC10AQ9H1F0 79 aa7.81□□□□□ -1.16
SYNE1-202ENST00000347037 LINC00846Q9NV44 126 aa7.81□□□□□ -1.16
SYNE1-202ENST00000347037 ATOX1O00244 68 aa7.81□□□□□ -1.16
SYNE1-202ENST00000347037 LRRC75A-AS1Q8N1F1 130 aa7.81□□□□□ -1.16
SYNE1-202ENST00000347037 ABCA12Q86UK0 2595 aa7.8□□□□□ -1.16
SYNE1-202ENST00000347037 H0YGX0 51 aa7.8□□□□□ -1.16
SYNE1-202ENST00000347037 IGHV4-31P0DP07 118 aa7.8□□□□□ -1.16
SYNE1-202ENST00000347037 NAV2Q8IVL1 2488 aa7.8□□□□□ -1.16
SYNE1-202ENST00000347037 A0A096LNT2 108 aa7.8□□□□□ -1.16
SYNE1-202ENST00000347037 C6orf226Q5I0X4 101 aa7.8□□□□□ -1.16
SYNE1-202ENST00000347037 CFAP161Q6P656 301 aa7.8□□□□□ -1.16
SYNE1-202ENST00000347037 LRRK2Q5S007 2527 aa7.8□□□□□ -1.16
SYNE1-202ENST00000347037 HIST1H4AP62805 103 aaKnown RBP7.79□□□□□ -1.16
SYNE1-202ENST00000347037 RNASE1P07998 156 aaKnown RBP7.79□□□□□ -1.16
SYNE1-202ENST00000347037 CLPSL2Q6UWE3 100 aa7.79□□□□□ -1.16
SYNE1-202ENST00000347037 C2orf48Q96LS8 159 aa7.79□□□□□ -1.16
SYNE1-202ENST00000347037 XCL1P47992 114 aa7.78□□□□□ -1.16
SYNE1-202ENST00000347037 RPL18AQ02543 176 aaKnown RBP7.78□□□□□ -1.16
SYNE1-202ENST00000347037 NIPBLQ6KC79 2804 aaeCLIP7.78□□□□□ -1.16
SYNE1-202ENST00000347037 IBA57-AS1B1ANH7 110 aa7.77□□□□□ -1.16
SYNE1-202ENST00000347037 IGHV3OR16-9A0A0B4J2B5 98 aa7.77□□□□□ -1.17
SYNE1-202ENST00000347037 FSHBP01225 129 aa7.77□□□□□ -1.17
SYNE1-202ENST00000347037 PRB1P04280 392 aa7.77□□□□□ -1.17
SYNE1-202ENST00000347037 ZNF843Q8N446 348 aa7.77□□□□□ -1.17
SYNE1-202ENST00000347037 TRBV6-8A0A0A6YYG3 113 aa7.77□□□□□ -1.17
SYNE1-202ENST00000347037 CCL24O00175 119 aa7.77□□□□□ -1.17
SYNE1-202ENST00000347037 CYSTM1Q9H1C7 97 aa7.77□□□□□ -1.17
SYNE1-202ENST00000347037 ORMDL1Q9P0S3 153 aa7.77□□□□□ -1.17
SYNE1-202ENST00000347037 C16orf74Q96GX8 76 aa7.76□□□□□ -1.17
SYNE1-202ENST00000347037 J3KT08 172 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms