RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ZNF625Q96I27 306 aaPredicted RBP13.7□□□□□ -0.22
COL9A3-201ENST00000343916 OVOL2Q9BRP0 275 aa13.7□□□□□ -0.22
COL9A3-201ENST00000343916 CSDC2Q9Y534 153 aaKnown RBP13.7□□□□□ -0.22
COL9A3-201ENST00000343916 MIAQ16674 131 aa13.7□□□□□ -0.22
COL9A3-201ENST00000343916 SPATA3Q8NHX4 192 aa13.7□□□□□ -0.22
COL9A3-201ENST00000343916 SPANXDQ9BXN6 97 aa13.7□□□□□ -0.22
COL9A3-201ENST00000343916 SPANXCQ9NY87 97 aa13.7□□□□□ -0.22
COL9A3-201ENST00000343916 NBEAL2Q6ZNJ1 2754 aa13.7□□□□□ -0.22
COL9A3-201ENST00000343916 UBE2L6O14933 153 aa13.69□□□□□ -0.22
COL9A3-201ENST00000343916 TRBV6-4A0A1B0GX49 114 aa13.68□□□□□ -0.22
COL9A3-201ENST00000343916 LINC00482Q8N8I6 264 aa13.68□□□□□ -0.22
COL9A3-201ENST00000343916 TMEM243Q9BU79 118 aa13.68□□□□□ -0.22
COL9A3-201ENST00000343916 Q9H8V8 135 aa13.68□□□□□ -0.22
COL9A3-201ENST00000343916 A0A0U1RRA0 63 aa13.67□□□□□ -0.22
COL9A3-201ENST00000343916 SMIM1B2RUZ4 78 aa13.67□□□□□ -0.22
COL9A3-201ENST00000343916 NDUFA1O15239 70 aa13.67□□□□□ -0.22
COL9A3-201ENST00000343916 IGLV5-39A0A0G2JS06 123 aa13.67□□□□□ -0.22
COL9A3-201ENST00000343916 DEFB130BP0DP73 79 aa13.67□□□□□ -0.22
COL9A3-201ENST00000343916 DEFB130AP0DP74 79 aa13.67□□□□□ -0.22
COL9A3-201ENST00000343916 FHL2Q14192 279 aa13.67□□□□□ -0.22
COL9A3-201ENST00000343916 NTN5Q8WTR8 489 aaPredicted RBP13.67□□□□□ -0.22
COL9A3-201ENST00000343916 CRLF1O75462 422 aa13.66□□□□□ -0.22
COL9A3-201ENST00000343916 INAFM1C9JVW0 142 aa13.65□□□□□ -0.22
COL9A3-201ENST00000343916 TRIAP1O43715 76 aa13.65□□□□□ -0.22
COL9A3-201ENST00000343916 LINC01620Q4KN68 170 aa13.65□□□□□ -0.22
COL9A3-201ENST00000343916 ATXN8Q156A1 80 aa13.65□□□□□ -0.22
COL9A3-201ENST00000343916 RNF183Q96D59 192 aa13.65□□□□□ -0.22
COL9A3-201ENST00000343916 IGKV3OR2-268A0A0C4DH90 116 aa13.64□□□□□ -0.23
COL9A3-201ENST00000343916 GAGE6Q13070 117 aa13.64□□□□□ -0.23
COL9A3-201ENST00000343916 FAM19A3Q7Z5A8 133 aa13.64□□□□□ -0.23
COL9A3-201ENST00000343916 TMEM262E9PQX1 116 aa13.64□□□□□ -0.23
COL9A3-201ENST00000343916 F5H768 121 aa13.63□□□□□ -0.23
COL9A3-201ENST00000343916 NSD1Q96L73 2696 aaPredicted RBP13.63□□□□□ -0.23
COL9A3-201ENST00000343916 TENM1Q9UKZ4 2725 aa13.62□□□□□ -0.23
COL9A3-201ENST00000343916 TEX49A0A1B0GTD5 131 aa13.62□□□□□ -0.23
COL9A3-201ENST00000343916 HIVEP1P15822 2718 aa13.62□□□□□ -0.23
COL9A3-201ENST00000343916 TIMM17BO60830 172 aa13.62□□□□□ -0.23
COL9A3-201ENST00000343916 IGLV4-60A0A075B6I1 120 aa13.61□□□□□ -0.23
COL9A3-201ENST00000343916 M0QXV9 152 aa13.61□□□□□ -0.23
COL9A3-201ENST00000343916 TRBV6-8A0A0A6YYG3 113 aa13.6□□□□□ -0.23
COL9A3-201ENST00000343916 PRIMA1Q86XR5 153 aa13.6□□□□□ -0.23
COL9A3-201ENST00000343916 ANAPC13Q9BS18 74 aa13.6□□□□□ -0.23
COL9A3-201ENST00000343916 TRBV30A0A0K0K1B3 111 aa13.59□□□□□ -0.23
COL9A3-201ENST00000343916 CIRBPQ14011 172 aaKnown RBP13.59□□□□□ -0.23
COL9A3-201ENST00000343916 CHCHD5Q9BSY4 110 aa13.59□□□□□ -0.23
COL9A3-201ENST00000343916 ICOSQ9Y6W8 199 aa13.59□□□□□ -0.23
COL9A3-201ENST00000343916 CITED1Q99966 193 aa13.58□□□□□ -0.23
COL9A3-201ENST00000343916 LINC00308Q8TCZ7 52 aa13.58□□□□□ -0.24
COL9A3-201ENST00000343916 X6R8D5 127 aa13.58□□□□□ -0.24
COL9A3-201ENST00000343916 FLNBO75369 2602 aaKnown RBP13.58□□□□□ -0.24
COL9A3-201ENST00000343916 TRBV10-2A0A0K0K1G8 114 aa13.57□□□□□ -0.24
COL9A3-201ENST00000343916 IFITM1P13164 125 aa13.57□□□□□ -0.24
COL9A3-201ENST00000343916 MEIG1Q5JSS6 88 aa13.57□□□□□ -0.24
COL9A3-201ENST00000343916 RPL13AP40429 203 aaKnown RBP13.56□□□□□ -0.24
COL9A3-201ENST00000343916 CLEC2BQ92478 149 aa13.56□□□□□ -0.24
COL9A3-201ENST00000343916 H7C423 109 aa13.56□□□□□ -0.24
COL9A3-201ENST00000343916 SOSTDC1Q6X4U4 206 aa13.56□□□□□ -0.24
COL9A3-201ENST00000343916 SNCGO76070 127 aa13.55□□□□□ -0.24
COL9A3-201ENST00000343916 KIR2DL5BQ8NHK3 375 aa13.55□□□□□ -0.24
COL9A3-201ENST00000343916 C2orf82Q6UX34 121 aa13.55□□□□□ -0.24
COL9A3-201ENST00000343916 ATRQ13535 2644 aa13.55□□□□□ -0.24
COL9A3-201ENST00000343916 DEFB4AO15263 64 aa13.54□□□□□ -0.24
COL9A3-201ENST00000343916 GYPEP15421 78 aa13.54□□□□□ -0.24
COL9A3-201ENST00000343916 UBE2WQ96B02 151 aa13.54□□□□□ -0.24
COL9A3-201ENST00000343916 A0A096LPF7 62 aa13.54□□□□□ -0.24
COL9A3-201ENST00000343916 TRAV8-4A0A0B4J246 113 aa13.54□□□□□ -0.24
COL9A3-201ENST00000343916 TRRAPQ9Y4A5 3859 aa13.54□□□□□ -0.24
COL9A3-201ENST00000343916 TOMM7Q9P0U1 55 aa13.53□□□□□ -0.24
COL9A3-201ENST00000343916 GAGE2BQ13066 116 aa13.53□□□□□ -0.24
COL9A3-201ENST00000343916 GAGE2EQ4V326 116 aa13.53□□□□□ -0.24
COL9A3-201ENST00000343916 LINC00612Q8N6U2 182 aa13.53□□□□□ -0.24
COL9A3-201ENST00000343916 GAGE2DQ9UEU5 116 aa13.53□□□□□ -0.24
COL9A3-201ENST00000343916 DEFB135Q30KP9 77 aa13.52□□□□□ -0.24
COL9A3-201ENST00000343916 C9orf66Q5T8R8 295 aa13.51□□□□□ -0.25
COL9A3-201ENST00000343916 FAM222AQ5U5X8 452 aa13.51□□□□□ -0.25
COL9A3-201ENST00000343916 COX6CP09669 75 aa13.51□□□□□ -0.25
COL9A3-201ENST00000343916 NHLRC4P0CG21 123 aaPredicted RBP13.5□□□□□ -0.25
COL9A3-201ENST00000343916 IGHV3OR16-9A0A0B4J2B5 98 aa13.49□□□□□ -0.25
COL9A3-201ENST00000343916 COX7B2Q8TF08 81 aa13.49□□□□□ -0.25
COL9A3-201ENST00000343916 LINC01600Q96MT4 127 aa13.49□□□□□ -0.25
COL9A3-201ENST00000343916 HERV-K104P63124 156 aa13.49□□□□□ -0.25
COL9A3-201ENST00000343916 C5orf38Q86SI9 138 aa13.49□□□□□ -0.25
COL9A3-201ENST00000343916 C15orf53Q8NAA6 179 aa13.49□□□□□ -0.25
COL9A3-201ENST00000343916 NDUFV3P56181 108 aaKnown RBP13.47□□□□□ -0.25
COL9A3-201ENST00000343916 SS18L2Q9UHA2 77 aa13.47□□□□□ -0.25
COL9A3-201ENST00000343916 LST1O00453 97 aa13.47□□□□□ -0.25
COL9A3-201ENST00000343916 CLPSL2Q6UWE3 100 aa13.47□□□□□ -0.25
COL9A3-201ENST00000343916 PRO0255Q9UI72 69 aa13.47□□□□□ -0.25
COL9A3-201ENST00000343916 TEP1Q99973 2627 aaKnown RBP13.46□□□□□ -0.25
COL9A3-201ENST00000343916 SMIM9A6NGZ8 99 aa13.46□□□□□ -0.25
COL9A3-201ENST00000343916 TTC32Q5I0X7 151 aa13.46□□□□□ -0.25
COL9A3-201ENST00000343916 H3BT86 120 aa13.46□□□□□ -0.26
COL9A3-201ENST00000343916 LINC00959A0A1B0GUT2 108 aa13.45□□□□□ -0.26
COL9A3-201ENST00000343916 B5MCH6 92 aa13.45□□□□□ -0.26
COL9A3-201ENST00000343916 MIR7-3HGQ8N6C7 128 aa13.44□□□□□ -0.26
COL9A3-201ENST00000343916 PAX4O43316 350 aa13.44□□□□□ -0.26
COL9A3-201ENST00000343916 A0A087WZ39 114 aa13.43□□□□□ -0.26
COL9A3-201ENST00000343916 XCL1P47992 114 aa13.43□□□□□ -0.26
COL9A3-201ENST00000343916 COPS9Q8WXC6 57 aa13.43□□□□□ -0.26
COL9A3-201ENST00000343916 IGHV4-28A0A0C4DH34 117 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms