RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 C11orf44Q8N8P7 122 aa15.98■□□□□ 0.15
TRIM28-202ENST00000341753 C22orf24Q9Y442 160 aa15.98■□□□□ 0.15
TRIM28-202ENST00000341753 A8MTW9 85 aa15.98■□□□□ 0.15
TRIM28-202ENST00000341753 BEAN1Q3B7T3 259 aa15.98■□□□□ 0.15
TRIM28-202ENST00000341753 NTM-AS1Q6ZSK4 140 aa15.98■□□□□ 0.15
TRIM28-202ENST00000341753 FAM110AQ9BQ89 295 aa15.97■□□□□ 0.15
TRIM28-202ENST00000341753 INSP01308 110 aa15.97■□□□□ 0.15
TRIM28-202ENST00000341753 ACYP1P07311 99 aa15.96■□□□□ 0.14
TRIM28-202ENST00000341753 DYNLRB2Q8TF09 96 aa15.96■□□□□ 0.14
TRIM28-202ENST00000341753 GAGE2AQ6NT46 116 aa15.95■□□□□ 0.14
TRIM28-202ENST00000341753 KRTAP1-3Q8IUG1 177 aa15.95■□□□□ 0.14
TRIM28-202ENST00000341753 MTORP42345 2549 aa15.94■□□□□ 0.14
TRIM28-202ENST00000341753 F5H768 121 aa15.94■□□□□ 0.14
TRIM28-202ENST00000341753 IGKV3OR2-268A0A0C4DH90 116 aa15.93■□□□□ 0.14
TRIM28-202ENST00000341753 LINC00643Q86TS7 51 aa15.93■□□□□ 0.14
TRIM28-202ENST00000341753 WFDC11Q8NEX6 87 aa15.93■□□□□ 0.14
TRIM28-202ENST00000341753 TRACP01848 142 aa15.92■□□□□ 0.14
TRIM28-202ENST00000341753 Q6ZTI0 123 aa15.92■□□□□ 0.14
TRIM28-202ENST00000341753 CDC42SE2Q9NRR3 84 aa15.91■□□□□ 0.14
TRIM28-202ENST00000341753 TOMM7Q9P0U1 55 aa15.91■□□□□ 0.14
TRIM28-202ENST00000341753 RPL36AP83881 106 aaKnown RBP15.9■□□□□ 0.14
TRIM28-202ENST00000341753 RPL36ALQ969Q0 106 aaKnown RBP15.9■□□□□ 0.14
TRIM28-202ENST00000341753 A0A1W2PRX2 142 aa15.89■□□□□ 0.13
TRIM28-202ENST00000341753 COPS9Q8WXC6 57 aa15.89■□□□□ 0.13
TRIM28-202ENST00000341753 C9orf153Q5TBE3 101 aa15.89■□□□□ 0.13
TRIM28-202ENST00000341753 C1orf158Q8N1D5 194 aa15.89■□□□□ 0.13
TRIM28-202ENST00000341753 LINC00337Q8N6G1 96 aa15.89■□□□□ 0.13
TRIM28-202ENST00000341753 IMUPQ9GZP8 106 aa15.89■□□□□ 0.13
TRIM28-202ENST00000341753 C9orf129Q5T035 196 aaKnown RBP15.88■□□□□ 0.13
TRIM28-202ENST00000341753 MIR7-3HGQ8N6C7 128 aa15.88■□□□□ 0.13
TRIM28-202ENST00000341753 K7EQD1 137 aa15.88■□□□□ 0.13
TRIM28-202ENST00000341753 PEMTQ9UBM1 199 aa15.88■□□□□ 0.13
TRIM28-202ENST00000341753 ITPR2Q14571 2701 aa15.87■□□□□ 0.13
TRIM28-202ENST00000341753 DEFB114Q30KQ6 69 aa15.87■□□□□ 0.13
TRIM28-202ENST00000341753 JMJD1CQ15652 2540 aa15.86■□□□□ 0.13
TRIM28-202ENST00000341753 CRPP02741 224 aa15.86■□□□□ 0.13
TRIM28-202ENST00000341753 MALP21145 153 aa15.86■□□□□ 0.13
TRIM28-202ENST00000341753 A0A087WYN8 130 aa15.86■□□□□ 0.13
TRIM28-202ENST00000341753 ODF3L2Q3SX64 289 aa15.86■□□□□ 0.13
TRIM28-202ENST00000341753 KLK5Q9Y337 293 aaPredicted RBP15.86■□□□□ 0.13
TRIM28-202ENST00000341753 LOC100131303A0A0U1RQF7 123 aa15.85■□□□□ 0.13
TRIM28-202ENST00000341753 IGKV2-28A0A075B6P5 120 aa15.85■□□□□ 0.13
TRIM28-202ENST00000341753 IGKV2D-28P01615 120 aa15.85■□□□□ 0.13
TRIM28-202ENST00000341753 FAM19A3Q7Z5A8 133 aa15.85■□□□□ 0.13
TRIM28-202ENST00000341753 UBE2L6O14933 153 aa15.84■□□□□ 0.13
TRIM28-202ENST00000341753 C3orf22Q8N5N4 141 aa15.84■□□□□ 0.13
TRIM28-202ENST00000341753 STHQ8IWL8 128 aa15.84■□□□□ 0.13
TRIM28-202ENST00000341753 SND1-IT1Q9HBX3 110 aa15.84■□□□□ 0.13
TRIM28-202ENST00000341753 ATP5G1P05496 136 aa15.83■□□□□ 0.13
TRIM28-202ENST00000341753 TMEM126AQ9H061 195 aa15.83■□□□□ 0.13
TRIM28-202ENST00000341753 SDIM1Q6ZPB5 146 aa15.83■□□□□ 0.12
TRIM28-202ENST00000341753 NOP10Q9NPE3 64 aaKnown RBP15.83■□□□□ 0.12
TRIM28-202ENST00000341753 C14orf132Q9NPU4 83 aa15.83■□□□□ 0.12
TRIM28-202ENST00000341753 CSDC2Q9Y534 153 aaKnown RBP15.83■□□□□ 0.12
TRIM28-202ENST00000341753 PPDPFQ9H3Y8 114 aa15.82■□□□□ 0.12
TRIM28-202ENST00000341753 LINC00158P58513 81 aa15.82■□□□□ 0.12
TRIM28-202ENST00000341753 TRAV13-2A0A0B4J235 113 aa15.81■□□□□ 0.12
TRIM28-202ENST00000341753 RPL28P46779 137 aaKnown RBP15.81■□□□□ 0.12
TRIM28-202ENST00000341753 SMIM11BQ8TCY0 68 aa15.81■□□□□ 0.12
TRIM28-202ENST00000341753 INAFM2P0DMQ5 153 aa15.81■□□□□ 0.12
TRIM28-202ENST00000341753 C4orf3Q8WVX3 66 aa15.81■□□□□ 0.12
TRIM28-202ENST00000341753 LRRC75A-AS1Q8N1F1 130 aa15.81■□□□□ 0.12
TRIM28-202ENST00000341753 COX7B2Q8TF08 81 aa15.81■□□□□ 0.12
TRIM28-202ENST00000341753 ESM1Q9NQ30 184 aa15.81■□□□□ 0.12
TRIM28-202ENST00000341753 FAM222AQ5U5X8 452 aa15.8■□□□□ 0.12
TRIM28-202ENST00000341753 TMEM243Q9BU79 118 aa15.8■□□□□ 0.12
TRIM28-202ENST00000341753 DNAJC9-AS1A6NH13 148 aa15.8■□□□□ 0.12
TRIM28-202ENST00000341753 DNAL4O96015 105 aa15.79■□□□□ 0.12
TRIM28-202ENST00000341753 C5orf38Q86SI9 138 aa15.79■□□□□ 0.12
TRIM28-202ENST00000341753 IL17DQ8TAD2 202 aa15.79■□□□□ 0.12
TRIM28-202ENST00000341753 PDZD2O15018 2839 aa15.79■□□□□ 0.12
TRIM28-202ENST00000341753 PFN2P35080 140 aa15.79■□□□□ 0.12
TRIM28-202ENST00000341753 ANK3Q12955 4377 aaKnown RBP15.78■□□□□ 0.12
TRIM28-202ENST00000341753 IGKV3D-7A0A0C4DH55 119 aa15.78■□□□□ 0.12
TRIM28-202ENST00000341753 TRBV10-1A0A0K0K1A3 114 aa15.78■□□□□ 0.12
TRIM28-202ENST00000341753 UQCRQO14949 82 aa15.78■□□□□ 0.12
TRIM28-202ENST00000341753 PLA2G2AP14555 144 aa15.77■□□□□ 0.12
TRIM28-202ENST00000341753 C11orf68Q9H3H3 251 aaKnown RBP15.77■□□□□ 0.12
TRIM28-202ENST00000341753 SLPIP03973 132 aa15.77■□□□□ 0.11
TRIM28-202ENST00000341753 HELZ2Q9BYK8 2649 aaKnown RBP15.77■□□□□ 0.11
TRIM28-202ENST00000341753 SETXQ7Z333 2677 aaKnown RBP15.77■□□□□ 0.11
TRIM28-202ENST00000341753 CCL18P55774 89 aa15.76■□□□□ 0.11
TRIM28-202ENST00000341753 IGLV4-60A0A075B6I1 120 aa15.75■□□□□ 0.11
TRIM28-202ENST00000341753 LOC107984640A0A0U1RRK4 108 aa15.74■□□□□ 0.11
TRIM28-202ENST00000341753 LECT2O14960 151 aa15.74■□□□□ 0.11
TRIM28-202ENST00000341753 LINC00526Q96FQ7 95 aa15.74■□□□□ 0.11
TRIM28-202ENST00000341753 TRGV2A0A075B6R0 118 aa15.74■□□□□ 0.11
TRIM28-202ENST00000341753 CXCL5P42830 114 aa15.74■□□□□ 0.11
TRIM28-202ENST00000341753 OR13C6PQ8NH95 151 aa15.74■□□□□ 0.11
TRIM28-202ENST00000341753 NCR3O14931 201 aa15.73■□□□□ 0.11
TRIM28-202ENST00000341753 PF4P02776 101 aa15.73■□□□□ 0.11
TRIM28-202ENST00000341753 WFDC10AQ9H1F0 79 aa15.73■□□□□ 0.11
TRIM28-202ENST00000341753 A0A087WVE0 104 aa15.72■□□□□ 0.11
TRIM28-202ENST00000341753 LINC00846Q9NV44 126 aa15.72■□□□□ 0.11
TRIM28-202ENST00000341753 PAX4O43316 350 aa15.71■□□□□ 0.11
TRIM28-202ENST00000341753 COX7CP15954 63 aa15.71■□□□□ 0.11
TRIM28-202ENST00000341753 C2orf48Q96LS8 159 aa15.71■□□□□ 0.11
TRIM28-202ENST00000341753 CYSTM1Q9H1C7 97 aa15.7■□□□□ 0.1
TRIM28-202ENST00000341753 hADV29S1A0JD25 119 aa15.68■□□□□ 0.1
TRIM28-202ENST00000341753 CCL24O00175 119 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms