RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 HAMPP81172 84 aa8.69□□□□□ -1.02
USP1-201ENST00000339950 COX6A2Q02221 97 aa8.69□□□□□ -1.02
USP1-201ENST00000339950 LINC00526Q96FQ7 95 aa8.69□□□□□ -1.02
USP1-201ENST00000339950 DNAJC9-AS1A6NH13 148 aa8.69□□□□□ -1.02
USP1-201ENST00000339950 UBE2D1P51668 147 aa8.69□□□□□ -1.02
USP1-201ENST00000339950 LINC00482Q8N8I6 264 aa8.69□□□□□ -1.02
USP1-201ENST00000339950 HIVEP1P15822 2718 aa8.69□□□□□ -1.02
USP1-201ENST00000339950 TRACP01848 142 aa8.68□□□□□ -1.02
USP1-201ENST00000339950 CFAP161Q6P656 301 aa8.68□□□□□ -1.02
USP1-201ENST00000339950 Q6YL49 198 aa8.68□□□□□ -1.02
USP1-201ENST00000339950 APCP25054 2843 aa8.68□□□□□ -1.02
USP1-201ENST00000339950 EIF4EBP3O60516 100 aaPredicted RBP8.68□□□□□ -1.02
USP1-201ENST00000339950 SDIM1Q6ZPB5 146 aa8.68□□□□□ -1.02
USP1-201ENST00000339950 IGHV1-58A0A0C4DH39 117 aa8.68□□□□□ -1.02
USP1-201ENST00000339950 VSIG2Q96IQ7 327 aa8.67□□□□□ -1.02
USP1-201ENST00000339950 TMEM243Q9BU79 118 aa8.67□□□□□ -1.02
USP1-201ENST00000339950 KLK5Q9Y337 293 aaPredicted RBP8.67□□□□□ -1.02
USP1-201ENST00000339950 PRO0461Q9UI25 63 aa8.67□□□□□ -1.02
USP1-201ENST00000339950 ODF3L2Q3SX64 289 aa8.66□□□□□ -1.02
USP1-201ENST00000339950 INAFM2P0DMQ5 153 aa8.66□□□□□ -1.02
USP1-201ENST00000339950 hADV29S1A0JD25 119 aa8.65□□□□□ -1.02
USP1-201ENST00000339950 C14orf132Q9NPU4 83 aa8.65□□□□□ -1.02
USP1-201ENST00000339950 MIR7-3HGQ8N6C7 128 aa8.65□□□□□ -1.03
USP1-201ENST00000339950 SLPIP03973 132 aa8.64□□□□□ -1.03
USP1-201ENST00000339950 S100A7L2Q5SY68 101 aa8.64□□□□□ -1.03
USP1-201ENST00000339950 MALP21145 153 aa8.64□□□□□ -1.03
USP1-201ENST00000339950 DAZ2Q13117 558 aaKnown RBP8.64□□□□□ -1.03
USP1-201ENST00000339950 DAZ4Q86SG3 579 aaKnown RBP8.64□□□□□ -1.03
USP1-201ENST00000339950 DAZ3Q9NR90 486 aaKnown RBP8.64□□□□□ -1.03
USP1-201ENST00000339950 STAB1Q9NY15 2570 aa8.64□□□□□ -1.03
USP1-201ENST00000339950 J3QLI3 93 aa8.63□□□□□ -1.03
USP1-201ENST00000339950 DEFB135Q30KP9 77 aa8.63□□□□□ -1.03
USP1-201ENST00000339950 M0QXV9 152 aa8.63□□□□□ -1.03
USP1-201ENST00000339950 PRB2P02812 416 aaPredicted RBP8.63□□□□□ -1.03
USP1-201ENST00000339950 GYPEP15421 78 aa8.63□□□□□ -1.03
USP1-201ENST00000339950 LOC107984640A0A0U1RRK4 108 aa8.63□□□□□ -1.03
USP1-201ENST00000339950 F5H768 121 aa8.63□□□□□ -1.03
USP1-201ENST00000339950 K7EQD1 137 aa8.63□□□□□ -1.03
USP1-201ENST00000339950 UBE2D3P61077 147 aa8.63□□□□□ -1.03
USP1-201ENST00000339950 UBE2D2P62837 147 aa8.63□□□□□ -1.03
USP1-201ENST00000339950 TMEM86BQ8N661 226 aa8.63□□□□□ -1.03
USP1-201ENST00000339950 UBE2D4Q9Y2X8 147 aa8.63□□□□□ -1.03
USP1-201ENST00000339950 C1orf43Q9BWL3 253 aa8.63□□□□□ -1.03
USP1-201ENST00000339950 LECT2O14960 151 aa8.62□□□□□ -1.03
USP1-201ENST00000339950 HERVK_113P63121 156 aa8.62□□□□□ -1.03
USP1-201ENST00000339950 ZNF843Q8N446 348 aa8.62□□□□□ -1.03
USP1-201ENST00000339950 SPANXA1Q9NS26 97 aa8.62□□□□□ -1.03
USP1-201ENST00000339950 ANGP03950 147 aaKnown RBP8.62□□□□□ -1.03
USP1-201ENST00000339950 TRBV6-5A0A0K0K1A5 114 aa8.62□□□□□ -1.03
USP1-201ENST00000339950 TMEM89A2RUT3 159 aa8.62□□□□□ -1.03
USP1-201ENST00000339950 TMEM263Q8WUH6 116 aaKnown RBP8.62□□□□□ -1.03
USP1-201ENST00000339950 H3BT86 120 aa8.61□□□□□ -1.03
USP1-201ENST00000339950 FHL3Q13643 280 aa8.61□□□□□ -1.03
USP1-201ENST00000339950 C1orf158Q8N1D5 194 aa8.61□□□□□ -1.03
USP1-201ENST00000339950 FAM19A4Q96LR4 140 aa8.61□□□□□ -1.03
USP1-201ENST00000339950 TRAV23DV6A0A075B6W5 121 aa8.6□□□□□ -1.03
USP1-201ENST00000339950 H7C423 109 aa8.6□□□□□ -1.03
USP1-201ENST00000339950 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.6□□□□□ -1.03
USP1-201ENST00000339950 CHCHD7Q9BUK0 85 aa8.6□□□□□ -1.03
USP1-201ENST00000339950 SND1-IT1Q9HBX3 110 aa8.6□□□□□ -1.03
USP1-201ENST00000339950 PRR3P79522 188 aaKnown RBP8.6□□□□□ -1.03
USP1-201ENST00000339950 MIAQ16674 131 aa8.6□□□□□ -1.03
USP1-201ENST00000339950 PPDPFQ9H3Y8 114 aa8.6□□□□□ -1.03
USP1-201ENST00000339950 COL6A5A8TX70 2615 aa8.6□□□□□ -1.03
USP1-201ENST00000339950 C4orf3Q8WVX3 66 aa8.59□□□□□ -1.03
USP1-201ENST00000339950 LINC00242Q5T6M2 205 aa8.59□□□□□ -1.03
USP1-201ENST00000339950 LINC00308Q8TCZ7 52 aa8.59□□□□□ -1.03
USP1-201ENST00000339950 A0A0B4J2C4 111 aa8.58□□□□□ -1.04
USP1-201ENST00000339950 J3KT08 172 aa8.58□□□□□ -1.04
USP1-201ENST00000339950 Q8N2B8 174 aa8.58□□□□□ -1.04
USP1-201ENST00000339950 LINC01006Q8NI28 216 aa8.58□□□□□ -1.04
USP1-201ENST00000339950 IGLV4-60A0A075B6I1 120 aa8.57□□□□□ -1.04
USP1-201ENST00000339950 MRAPQ8TCY5 172 aa8.57□□□□□ -1.04
USP1-201ENST00000339950 A0A087WVE0 104 aa8.57□□□□□ -1.04
USP1-201ENST00000339950 RBM3P98179 157 aaKnown RBP8.56□□□□□ -1.04
USP1-201ENST00000339950 C20orf197Q8N268 126 aa8.56□□□□□ -1.04
USP1-201ENST00000339950 RNF152Q8N8N0 203 aa8.56□□□□□ -1.04
USP1-201ENST00000339950 WFDC9Q8NEX5 89 aa8.56□□□□□ -1.04
USP1-201ENST00000339950 SVIPQ8NHG7 77 aa8.56□□□□□ -1.04
USP1-201ENST00000339950 UBL5Q9BZL1 73 aa8.56□□□□□ -1.04
USP1-201ENST00000339950 LINC00643Q86TS7 51 aa8.56□□□□□ -1.04
USP1-201ENST00000339950 MRPS36P82909 103 aaKnown RBP8.55□□□□□ -1.04
USP1-201ENST00000339950 DSCR8Q96T75 97 aa8.55□□□□□ -1.04
USP1-201ENST00000339950 NCR3O14931 201 aa8.55□□□□□ -1.04
USP1-201ENST00000339950 COX7B2Q8TF08 81 aa8.55□□□□□ -1.04
USP1-201ENST00000339950 DAD1P61803 113 aa8.54□□□□□ -1.04
USP1-201ENST00000339950 C9orf116Q5BN46 136 aaPredicted RBP8.54□□□□□ -1.04
USP1-201ENST00000339950 NTM-AS1Q6ZSK4 140 aa8.54□□□□□ -1.04
USP1-201ENST00000339950 AMELXQ99217 191 aa8.54□□□□□ -1.04
USP1-201ENST00000339950 TRBV30A0A0K0K1B3 111 aa8.54□□□□□ -1.04
USP1-201ENST00000339950 ATOX1O00244 68 aa8.54□□□□□ -1.04
USP1-201ENST00000339950 Q8N3U1 123 aa8.54□□□□□ -1.04
USP1-201ENST00000339950 TRAV13-2A0A0B4J235 113 aa8.54□□□□□ -1.04
USP1-201ENST00000339950 ACYP1P07311 99 aa8.54□□□□□ -1.04
USP1-201ENST00000339950 UQCRQO14949 82 aa8.54□□□□□ -1.04
USP1-201ENST00000339950 ODF3Q96PU9 254 aa8.54□□□□□ -1.04
USP1-201ENST00000339950 LINC00269Q8N2A0 174 aa8.53□□□□□ -1.04
USP1-201ENST00000339950 C3orf22Q8N5N4 141 aa8.53□□□□□ -1.04
USP1-201ENST00000339950 BAHCC1Q9P281 2608 aa8.53□□□□□ -1.04
USP1-201ENST00000339950 SS18Q15532 418 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 157 ms