RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CLPSL2Q6UWE3 100 aa9.22□□□□□ -0.93
HMGB1-202ENST00000339872 CEND1Q8N111 149 aa9.22□□□□□ -0.93
HMGB1-202ENST00000339872 Q8N3U1 123 aa9.22□□□□□ -0.93
HMGB1-202ENST00000339872 K7EP13 123 aa9.21□□□□□ -0.93
HMGB1-202ENST00000339872 A6NDN8 102 aa9.21□□□□□ -0.94
HMGB1-202ENST00000339872 SMIM1B2RUZ4 78 aa9.21□□□□□ -0.94
HMGB1-202ENST00000339872 LINC00959A0A1B0GUT2 108 aa9.2□□□□□ -0.94
HMGB1-202ENST00000339872 PTTG1IPP53801 180 aa9.2□□□□□ -0.94
HMGB1-202ENST00000339872 LYPD5Q6UWN5 251 aa9.2□□□□□ -0.94
HMGB1-202ENST00000339872 Q6ZVH6 145 aa9.2□□□□□ -0.94
HMGB1-202ENST00000339872 C10orf126Q8N4M7 172 aa9.2□□□□□ -0.94
HMGB1-202ENST00000339872 NDUFA12Q9UI09 145 aa9.2□□□□□ -0.94
HMGB1-202ENST00000339872 SRSF9Q13242 221 aaKnown RBP eCLIP9.2□□□□□ -0.94
HMGB1-202ENST00000339872 TM2D2Q9BX73 214 aa9.2□□□□□ -0.94
HMGB1-202ENST00000339872 IGLV5-39A0A0G2JS06 123 aa9.19□□□□□ -0.94
HMGB1-202ENST00000339872 ANGP03950 147 aaKnown RBP9.19□□□□□ -0.94
HMGB1-202ENST00000339872 ZFAND6Q6FIF0 208 aa9.19□□□□□ -0.94
HMGB1-202ENST00000339872 LINC00269Q8N2A0 174 aa9.19□□□□□ -0.94
HMGB1-202ENST00000339872 LURAP1LQ8IV03 231 aa9.19□□□□□ -0.94
HMGB1-202ENST00000339872 A0A0J9YXY3 114 aa9.18□□□□□ -0.94
HMGB1-202ENST00000339872 TAX1BP3O14907 124 aa9.18□□□□□ -0.94
HMGB1-202ENST00000339872 SS18Q15532 418 aa9.18□□□□□ -0.94
HMGB1-202ENST00000339872 SPANXB1Q9NS25 103 aaPredicted RBP9.17□□□□□ -0.94
HMGB1-202ENST00000339872 IGHV3OR16-9A0A0B4J2B5 98 aa9.17□□□□□ -0.94
HMGB1-202ENST00000339872 CCL25O15444 150 aa9.17□□□□□ -0.94
HMGB1-202ENST00000339872 XCL1P47992 114 aa9.17□□□□□ -0.94
HMGB1-202ENST00000339872 TRAV10A0A0B4J240 114 aa9.16□□□□□ -0.94
HMGB1-202ENST00000339872 REG3AQ06141 175 aa9.16□□□□□ -0.94
HMGB1-202ENST00000339872 NHP2Q9NX24 153 aaKnown RBP9.16□□□□□ -0.94
HMGB1-202ENST00000339872 COX11Q9Y6N1 276 aa9.16□□□□□ -0.94
HMGB1-202ENST00000339872 C5orf38Q86SI9 138 aa9.16□□□□□ -0.94
HMGB1-202ENST00000339872 TMEM238C9JI98 176 aa9.15□□□□□ -0.94
HMGB1-202ENST00000339872 NDUFA1O15239 70 aa9.15□□□□□ -0.94
HMGB1-202ENST00000339872 K7ERJ3 54 aa9.15□□□□□ -0.95
HMGB1-202ENST00000339872 RAB37Q96AX2 223 aa9.15□□□□□ -0.95
HMGB1-202ENST00000339872 Q9H8V8 135 aa9.15□□□□□ -0.95
HMGB1-202ENST00000339872 HUWE1Q7Z6Z7 4374 aaKnown RBP9.14□□□□□ -0.95
HMGB1-202ENST00000339872 A0A087WZ39 114 aa9.14□□□□□ -0.95
HMGB1-202ENST00000339872 SMIM13P0DJ93 91 aa9.14□□□□□ -0.95
HMGB1-202ENST00000339872 WFDC10BQ8IUB3 73 aa9.14□□□□□ -0.95
HMGB1-202ENST00000339872 IGLV10-54A0A075B6I4 117 aa9.14□□□□□ -0.95
HMGB1-202ENST00000339872 IGHV3-30P01768 117 aa9.14□□□□□ -0.95
HMGB1-202ENST00000339872 IGHV3-33P01772 117 aa9.14□□□□□ -0.95
HMGB1-202ENST00000339872 IGHV3-30-5P0DP03 117 aa9.14□□□□□ -0.95
HMGB1-202ENST00000339872 ESRGQ1W209 222 aa9.14□□□□□ -0.95
HMGB1-202ENST00000339872 TOMM7Q9P0U1 55 aa9.14□□□□□ -0.95
HMGB1-202ENST00000339872 KLK12Q9UKR0 248 aa9.13□□□□□ -0.95
HMGB1-202ENST00000339872 TMEM238LA0A1B0GVL6 79 aa9.13□□□□□ -0.95
HMGB1-202ENST00000339872 A6NJY4 79 aa9.13□□□□□ -0.95
HMGB1-202ENST00000339872 COX7B2Q8TF08 81 aa9.13□□□□□ -0.95
HMGB1-202ENST00000339872 CHCHD10Q8WYQ3 142 aaPredicted RBP9.13□□□□□ -0.95
HMGB1-202ENST00000339872 LITAFQ99732 161 aa9.13□□□□□ -0.95
HMGB1-202ENST00000339872 B9D2Q9BPU9 175 aa9.13□□□□□ -0.95
HMGB1-202ENST00000339872 ZNF625Q96I27 306 aaPredicted RBP9.12□□□□□ -0.95
HMGB1-202ENST00000339872 CD164L2Q6UWJ8 174 aa9.11□□□□□ -0.95
HMGB1-202ENST00000339872 ADAMTSL4-AS1Q5T5F5 129 aa9.1□□□□□ -0.95
HMGB1-202ENST00000339872 C15orf53Q8NAA6 179 aa9.1□□□□□ -0.95
HMGB1-202ENST00000339872 NAA38Q9BRA0 125 aaKnown RBP9.1□□□□□ -0.95
HMGB1-202ENST00000339872 C9orf118A6NHY6 69 aa9.1□□□□□ -0.95
HMGB1-202ENST00000339872 PRR34Q9NV39 138 aa9.1□□□□□ -0.95
HMGB1-202ENST00000339872 H3BUT2 72 aa9.09□□□□□ -0.95
HMGB1-202ENST00000339872 TIMM17BO60830 172 aa9.09□□□□□ -0.95
HMGB1-202ENST00000339872 CRPP02741 224 aa9.09□□□□□ -0.95
HMGB1-202ENST00000339872 MUSTN1Q8IVN3 82 aa9.09□□□□□ -0.95
HMGB1-202ENST00000339872 SPANXDQ9BXN6 97 aa9.09□□□□□ -0.95
HMGB1-202ENST00000339872 SPANXCQ9NY87 97 aa9.09□□□□□ -0.95
HMGB1-202ENST00000339872 A0A1B0GWB2 263 aa9.09□□□□□ -0.95
HMGB1-202ENST00000339872 COX7A2LO14548 114 aa9.09□□□□□ -0.95
HMGB1-202ENST00000339872 PRSS2P07478 247 aa9.09□□□□□ -0.95
HMGB1-202ENST00000339872 HERV-K104P63124 156 aa9.09□□□□□ -0.95
HMGB1-202ENST00000339872 CIRBPQ14011 172 aaKnown RBP9.09□□□□□ -0.95
HMGB1-202ENST00000339872 MIAQ16674 131 aa9.09□□□□□ -0.95
HMGB1-202ENST00000339872 MEIG1Q5JSS6 88 aa9.09□□□□□ -0.95
HMGB1-202ENST00000339872 ENHOQ6UWT2 76 aa9.09□□□□□ -0.95
HMGB1-202ENST00000339872 APOMO95445 188 aa9.08□□□□□ -0.96
HMGB1-202ENST00000339872 NPC2P61916 151 aa9.08□□□□□ -0.96
HMGB1-202ENST00000339872 VAMP3Q15836 100 aa9.08□□□□□ -0.96
HMGB1-202ENST00000339872 DAND5Q8N907 189 aa9.08□□□□□ -0.96
HMGB1-202ENST00000339872 UBE2WQ96B02 151 aa9.08□□□□□ -0.96
HMGB1-202ENST00000339872 A0A0U1RRA0 63 aa9.08□□□□□ -0.96
HMGB1-202ENST00000339872 IGLL5B9A064 214 aa9.08□□□□□ -0.96
HMGB1-202ENST00000339872 RPL24P83731 157 aaKnown RBP9.08□□□□□ -0.96
HMGB1-202ENST00000339872 A4D1N5 150 aa9.07□□□□□ -0.96
HMGB1-202ENST00000339872 MALP21145 153 aa9.07□□□□□ -0.96
HMGB1-202ENST00000339872 FOXI1Q12951 378 aa9.07□□□□□ -0.96
HMGB1-202ENST00000339872 LINC01561Q8N1V8 128 aa9.07□□□□□ -0.96
HMGB1-202ENST00000339872 GAGE12HA6NDE8 117 aa9.06□□□□□ -0.96
HMGB1-202ENST00000339872 COL7A1Q02388 2944 aa9.06□□□□□ -0.96
HMGB1-202ENST00000339872 C6orf226Q5I0X4 101 aa9.06□□□□□ -0.96
HMGB1-202ENST00000339872 CFC1BP0CG36 223 aa9.05□□□□□ -0.96
HMGB1-202ENST00000339872 CFC1P0CG37 223 aa9.05□□□□□ -0.96
HMGB1-202ENST00000339872 LINC01556Q5JQF7 62 aa9.05□□□□□ -0.96
HMGB1-202ENST00000339872 Q8IZM0 81 aa9.05□□□□□ -0.96
HMGB1-202ENST00000339872 DNAH9Q9NYC9 4486 aa9.04□□□□□ -0.96
HMGB1-202ENST00000339872 TRAV8-4A0A0B4J246 113 aa9.04□□□□□ -0.96
HMGB1-202ENST00000339872 A0A1W2PPM0 123 aa9.04□□□□□ -0.96
HMGB1-202ENST00000339872 LINC00588Q9Y4M8 146 aa9.04□□□□□ -0.96
HMGB1-202ENST00000339872 IFITM1P13164 125 aa9.03□□□□□ -0.96
HMGB1-202ENST00000339872 PGPEP1Q9NXJ5 209 aa9.03□□□□□ -0.96
HMGB1-202ENST00000339872 EIF4EBP3O60516 100 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms