RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 XAGE1AQ9HD64 81 aa7.16□□□□□ -1.26
USP54-201ENST00000339859 CHD9Q3L8U1 2897 aa7.16□□□□□ -1.26
USP54-201ENST00000339859 CHD7Q9P2D1 2997 aa7.16□□□□□ -1.26
USP54-201ENST00000339859 TIMM17BO60830 172 aa7.15□□□□□ -1.26
USP54-201ENST00000339859 A0A1W2PPM0 123 aa7.15□□□□□ -1.26
USP54-201ENST00000339859 LINC01561Q8N1V8 128 aa7.15□□□□□ -1.27
USP54-201ENST00000339859 IGLV4-60A0A075B6I1 120 aa7.14□□□□□ -1.27
USP54-201ENST00000339859 PLAC8L1A1L4L8 177 aa7.14□□□□□ -1.27
USP54-201ENST00000339859 CYSRT1A8MQ03 144 aa7.14□□□□□ -1.27
USP54-201ENST00000339859 A8MZ25 164 aa7.14□□□□□ -1.27
USP54-201ENST00000339859 NDUFB1O75438 58 aa7.14□□□□□ -1.27
USP54-201ENST00000339859 LINC00526Q96FQ7 95 aa7.14□□□□□ -1.27
USP54-201ENST00000339859 WNK1Q9H4A3 2382 aa7.14□□□□□ -1.27
USP54-201ENST00000339859 hADV29S1A0JD25 119 aa7.14□□□□□ -1.27
USP54-201ENST00000339859 C2orf48Q96LS8 159 aa7.14□□□□□ -1.27
USP54-201ENST00000339859 NACAE9PAV3 2078 aa7.14□□□□□ -1.27
USP54-201ENST00000339859 ESRGQ1W209 222 aa7.14□□□□□ -1.27
USP54-201ENST00000339859 F8W1H4 67 aa7.13□□□□□ -1.27
USP54-201ENST00000339859 TRAV23DV6A0A075B6W5 121 aa7.13□□□□□ -1.27
USP54-201ENST00000339859 WDR87Q6ZQQ6 2873 aa7.13□□□□□ -1.27
USP54-201ENST00000339859 K7EP34 96 aa7.13□□□□□ -1.27
USP54-201ENST00000339859 GAS8-AS1O95177 125 aa7.13□□□□□ -1.27
USP54-201ENST00000339859 IGIPA6NJ69 53 aa7.13□□□□□ -1.27
USP54-201ENST00000339859 TMEM256-PLSCR3K7ERE1 68 aa7.13□□□□□ -1.27
USP54-201ENST00000339859 LINC00308Q8TCZ7 52 aa7.13□□□□□ -1.27
USP54-201ENST00000339859 DHRS4-AS1Q9P1J3 65 aa7.13□□□□□ -1.27
USP54-201ENST00000339859 LINC00694P0DN24 101 aa7.12□□□□□ -1.27
USP54-201ENST00000339859 A0A0B4J2C4 111 aa7.12□□□□□ -1.27
USP54-201ENST00000339859 M0QXV9 152 aa7.12□□□□□ -1.27
USP54-201ENST00000339859 TRACP01848 142 aa7.12□□□□□ -1.27
USP54-201ENST00000339859 ANKRD29Q8N6D5 301 aa7.12□□□□□ -1.27
USP54-201ENST00000339859 TTTY13Q9BZ97 58 aa7.12□□□□□ -1.27
USP54-201ENST00000339859 RPL28P46779 137 aaKnown RBP7.12□□□□□ -1.27
USP54-201ENST00000339859 LINC00242Q5T6M2 205 aa7.12□□□□□ -1.27
USP54-201ENST00000339859 NDUFS5O43920 106 aa7.11□□□□□ -1.27
USP54-201ENST00000339859 OCIAD2Q56VL3 154 aa7.11□□□□□ -1.27
USP54-201ENST00000339859 MTURNQ8N3F0 131 aa7.11□□□□□ -1.27
USP54-201ENST00000339859 HAMPP81172 84 aa7.11□□□□□ -1.27
USP54-201ENST00000339859 JMJD7-PLA2G4BH0Y9G9 81 aa7.11□□□□□ -1.27
USP54-201ENST00000339859 NBDYA0A0U1RRE5 68 aa7.11□□□□□ -1.27
USP54-201ENST00000339859 UBE2V1Q13404 147 aa7.11□□□□□ -1.27
USP54-201ENST00000339859 YPEL4Q96NS1 127 aa7.11□□□□□ -1.27
USP54-201ENST00000339859 ANKRD17O75179 2603 aaKnown RBP7.11□□□□□ -1.27
USP54-201ENST00000339859 PPDPFLQ8WWR9 84 aa7.11□□□□□ -1.27
USP54-201ENST00000339859 IGKV2-28A0A075B6P5 120 aa7.1□□□□□ -1.27
USP54-201ENST00000339859 IGKV2D-28P01615 120 aa7.1□□□□□ -1.27
USP54-201ENST00000339859 MYO18BQ8IUG5 2567 aa7.1□□□□□ -1.27
USP54-201ENST00000339859 IGKV2D-26A0A0A0MRZ7 120 aa7.09□□□□□ -1.27
USP54-201ENST00000339859 TM2D3Q9BRN9 247 aa7.09□□□□□ -1.27
USP54-201ENST00000339859 AMELXQ99217 191 aa7.08□□□□□ -1.28
USP54-201ENST00000339859 NOTCH3Q9UM47 2321 aa7.08□□□□□ -1.28
USP54-201ENST00000339859 PDE6GP18545 87 aa7.08□□□□□ -1.28
USP54-201ENST00000339859 UNQ6190/PRO20217Q6UXQ8 127 aa7.08□□□□□ -1.28
USP54-201ENST00000339859 KIF25-AS1Q9Y6Z4 181 aa7.08□□□□□ -1.28
USP54-201ENST00000339859 RPL37AP8A6NKH3 93 aa7.08□□□□□ -1.28
USP54-201ENST00000339859 FXYD2P54710 66 aa7.08□□□□□ -1.28
USP54-201ENST00000339859 RBM3P98179 157 aaKnown RBP7.07□□□□□ -1.28
USP54-201ENST00000339859 LINC01620Q4KN68 170 aa7.07□□□□□ -1.28
USP54-201ENST00000339859 LRRK2Q5S007 2527 aa7.07□□□□□ -1.28
USP54-201ENST00000339859 COX6A2Q02221 97 aa7.07□□□□□ -1.28
USP54-201ENST00000339859 TRANK1O15050 2925 aa7.07□□□□□ -1.28
USP54-201ENST00000339859 SMIM1B2RUZ4 78 aa7.07□□□□□ -1.28
USP54-201ENST00000339859 REG3GQ6UW15 175 aa7.06□□□□□ -1.28
USP54-201ENST00000339859 LINC00588Q9Y4M8 146 aa7.06□□□□□ -1.28
USP54-201ENST00000339859 NDUFC2-KCTD14E9PQ53 114 aa7.06□□□□□ -1.28
USP54-201ENST00000339859 CSNK1G2-AS1Q8NCQ2 148 aa7.06□□□□□ -1.28
USP54-201ENST00000339859 A8MTW9 85 aa7.06□□□□□ -1.28
USP54-201ENST00000339859 H3BMG7 143 aa7.06□□□□□ -1.28
USP54-201ENST00000339859 NREPQ16612 68 aa7.06□□□□□ -1.28
USP54-201ENST00000339859 CLEC2BQ92478 149 aa7.06□□□□□ -1.28
USP54-201ENST00000339859 SONP18583 2426 aaKnown RBP7.05□□□□□ -1.28
USP54-201ENST00000339859 LINC00315P59091 139 aa7.05□□□□□ -1.28
USP54-201ENST00000339859 ACYP1P07311 99 aa7.04□□□□□ -1.28
USP54-201ENST00000339859 SIGMAR1Q99720 223 aa7.04□□□□□ -1.28
USP54-201ENST00000339859 NTN5Q8WTR8 489 aaPredicted RBP7.04□□□□□ -1.28
USP54-201ENST00000339859 C1orf137Q5JT78 98 aa7.04□□□□□ -1.28
USP54-201ENST00000339859 ZNF73O43830 326 aaPredicted RBP7.03□□□□□ -1.28
USP54-201ENST00000339859 C6orf99Q4VX62 202 aa7.03□□□□□ -1.28
USP54-201ENST00000339859 TRBV10-2A0A0K0K1G8 114 aa7.03□□□□□ -1.28
USP54-201ENST00000339859 C16orf90A8MZG2 172 aa7.02□□□□□ -1.29
USP54-201ENST00000339859 MAPKAPK5-AS1Q8N8E1 139 aa7.02□□□□□ -1.29
USP54-201ENST00000339859 FAM229AH3BQW9 127 aa7.02□□□□□ -1.29
USP54-201ENST00000339859 MRPL55Q7Z7F7 128 aaKnown RBP7.02□□□□□ -1.29
USP54-201ENST00000339859 A0A096LNI7 61 aa7.02□□□□□ -1.29
USP54-201ENST00000339859 RTL8CO15255 209 aa7.02□□□□□ -1.29
USP54-201ENST00000339859 DSCAML1Q8TD84 2053 aa7.02□□□□□ -1.29
USP54-201ENST00000339859 H3BT86 120 aa7.01□□□□□ -1.29
USP54-201ENST00000339859 CDPF1Q6NVV7 123 aa7.01□□□□□ -1.29
USP54-201ENST00000339859 Q6ZRU5 148 aa7.01□□□□□ -1.29
USP54-201ENST00000339859 PPDPFQ9H3Y8 114 aa7.01□□□□□ -1.29
USP54-201ENST00000339859 SS18L2Q9UHA2 77 aa7.01□□□□□ -1.29
USP54-201ENST00000339859 H0Y9J4 135 aa7.01□□□□□ -1.29
USP54-201ENST00000339859 PRYO14603 147 aa7.01□□□□□ -1.29
USP54-201ENST00000339859 DNAH10OSP0CZ25 163 aa7.01□□□□□ -1.29
USP54-201ENST00000339859 C9orf116Q5BN46 136 aaPredicted RBP7.01□□□□□ -1.29
USP54-201ENST00000339859 TP73-AS1Q9UF72 201 aa7□□□□□ -1.29
USP54-201ENST00000339859 NTM-AS1Q6ZSK4 140 aa7□□□□□ -1.29
USP54-201ENST00000339859 ABCA2Q9BZC7 2435 aa7□□□□□ -1.29
USP54-201ENST00000339859 SORL1Q92673 2214 aa7□□□□□ -1.29
USP54-201ENST00000339859 FOXI1Q12951 378 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms