RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 FAM19A3Q7Z5A8 133 aa10.7□□□□□ -0.7
LIMS1-202ENST00000338045 DNHD1Q96M86 4753 aa10.69□□□□□ -0.7
LIMS1-202ENST00000338045 K7EP34 96 aa10.69□□□□□ -0.7
LIMS1-202ENST00000338045 HERVK_113P61574 105 aa10.69□□□□□ -0.7
LIMS1-202ENST00000338045 C2orf91Q6ZV80 131 aa10.69□□□□□ -0.7
LIMS1-202ENST00000338045 IGLV4-60A0A075B6I1 120 aa10.68□□□□□ -0.7
LIMS1-202ENST00000338045 A0A1B0GUV1 79 aa10.68□□□□□ -0.7
LIMS1-202ENST00000338045 TMEM223A0PJW6 202 aa10.68□□□□□ -0.7
LIMS1-202ENST00000338045 TIRAPP58753 221 aa10.68□□□□□ -0.7
LIMS1-202ENST00000338045 TTTY13Q9BZ97 58 aa10.68□□□□□ -0.7
LIMS1-202ENST00000338045 IGLV5-45A0A087WSX0 123 aa10.67□□□□□ -0.7
LIMS1-202ENST00000338045 LINC00242Q5T6M2 205 aa10.67□□□□□ -0.7
LIMS1-202ENST00000338045 DNAH9Q9NYC9 4486 aa10.67□□□□□ -0.7
LIMS1-202ENST00000338045 DEFB131BA0A096LNP1 70 aa10.66□□□□□ -0.7
LIMS1-202ENST00000338045 TRAV8-6A0A0B4J262 113 aa10.66□□□□□ -0.7
LIMS1-202ENST00000338045 SEC11AP67812 179 aa10.66□□□□□ -0.7
LIMS1-202ENST00000338045 BVES-AS1Q5T3Y7 98 aa10.66□□□□□ -0.7
LIMS1-202ENST00000338045 LELP1Q5T871 98 aa10.66□□□□□ -0.7
LIMS1-202ENST00000338045 MAPKAPK5-AS1Q8N8E1 139 aa10.66□□□□□ -0.7
LIMS1-202ENST00000338045 B9D2Q9BPU9 175 aa10.66□□□□□ -0.7
LIMS1-202ENST00000338045 HERVK_113P63121 156 aa10.65□□□□□ -0.7
LIMS1-202ENST00000338045 MPV17L2Q567V2 206 aa10.65□□□□□ -0.7
LIMS1-202ENST00000338045 TRAV13-1A0A0B4J241 112 aa10.64□□□□□ -0.71
LIMS1-202ENST00000338045 A6NDN8 102 aa10.64□□□□□ -0.71
LIMS1-202ENST00000338045 RPL24P83731 157 aaKnown RBP10.64□□□□□ -0.71
LIMS1-202ENST00000338045 TMEM262E9PQX1 116 aa10.64□□□□□ -0.71
LIMS1-202ENST00000338045 COX6A2Q02221 97 aa10.64□□□□□ -0.71
LIMS1-202ENST00000338045 LYPD5Q6UWN5 251 aa10.64□□□□□ -0.71
LIMS1-202ENST00000338045 HIGD1BQ9P298 99 aa10.64□□□□□ -0.71
LIMS1-202ENST00000338045 MYMXA0A1B0GTQ4 84 aa10.63□□□□□ -0.71
LIMS1-202ENST00000338045 LEPROTO15243 131 aa10.63□□□□□ -0.71
LIMS1-202ENST00000338045 CDKN2A-AS1Q9UH64 79 aa10.63□□□□□ -0.71
LIMS1-202ENST00000338045 TRAV10A0A0B4J240 114 aa10.62□□□□□ -0.71
LIMS1-202ENST00000338045 TSPEAR-AS2P59090 65 aa10.62□□□□□ -0.71
LIMS1-202ENST00000338045 ANAPC13Q9BS18 74 aa10.62□□□□□ -0.71
LIMS1-202ENST00000338045 B5MCH6 92 aa10.61□□□□□ -0.71
LIMS1-202ENST00000338045 J3QQQ9 107 aa10.61□□□□□ -0.71
LIMS1-202ENST00000338045 IGHV1-58A0A0C4DH39 117 aa10.61□□□□□ -0.71
LIMS1-202ENST00000338045 PLEKHB2Q96CS7 222 aa10.61□□□□□ -0.71
LIMS1-202ENST00000338045 ZNF815PA8K554 130 aa10.6□□□□□ -0.71
LIMS1-202ENST00000338045 H3BRM9 83 aa10.6□□□□□ -0.71
LIMS1-202ENST00000338045 IGHV3-30-3P0DP02 117 aa10.6□□□□□ -0.71
LIMS1-202ENST00000338045 C9orf118A6NHY6 69 aa10.59□□□□□ -0.71
LIMS1-202ENST00000338045 IGHV3-64A0A075B6Q5 118 aa10.59□□□□□ -0.71
LIMS1-202ENST00000338045 TRAV8-3A0A0A6YYJ7 113 aa10.59□□□□□ -0.71
LIMS1-202ENST00000338045 LINC00959A0A1B0GUT2 108 aa10.59□□□□□ -0.71
LIMS1-202ENST00000338045 LGALS3P17931 250 aaKnown RBP10.59□□□□□ -0.71
LIMS1-202ENST00000338045 SPINK8P0C7L1 97 aa10.58□□□□□ -0.72
LIMS1-202ENST00000338045 TMEM126AQ9H061 195 aa10.58□□□□□ -0.72
LIMS1-202ENST00000338045 IGLV5-39A0A0G2JS06 123 aa10.57□□□□□ -0.72
LIMS1-202ENST00000338045 Q8N3U1 123 aa10.57□□□□□ -0.72
LIMS1-202ENST00000338045 IGHV3OR16-9A0A0B4J2B5 98 aa10.57□□□□□ -0.72
LIMS1-202ENST00000338045 IGKV3OR2-268A0A0C4DH90 116 aa10.57□□□□□ -0.72
LIMS1-202ENST00000338045 C15orf53Q8NAA6 179 aa10.57□□□□□ -0.72
LIMS1-202ENST00000338045 SMIM1B2RUZ4 78 aa10.56□□□□□ -0.72
LIMS1-202ENST00000338045 ESRGQ1W209 222 aa10.56□□□□□ -0.72
LIMS1-202ENST00000338045 ANGP03950 147 aaKnown RBP10.55□□□□□ -0.72
LIMS1-202ENST00000338045 NHLRC4P0CG21 123 aaPredicted RBP10.55□□□□□ -0.72
LIMS1-202ENST00000338045 LINC00269Q8N2A0 174 aa10.55□□□□□ -0.72
LIMS1-202ENST00000338045 PPDPFQ9H3Y8 114 aa10.55□□□□□ -0.72
LIMS1-202ENST00000338045 COL7A1Q02388 2944 aa10.55□□□□□ -0.72
LIMS1-202ENST00000338045 SS18Q15532 418 aa10.54□□□□□ -0.72
LIMS1-202ENST00000338045 ZFAND6Q6FIF0 208 aa10.54□□□□□ -0.72
LIMS1-202ENST00000338045 REG3AQ06141 175 aa10.53□□□□□ -0.72
LIMS1-202ENST00000338045 TAL2Q16559 108 aa10.53□□□□□ -0.72
LIMS1-202ENST00000338045 SCGB1D4Q6XE38 83 aa10.53□□□□□ -0.72
LIMS1-202ENST00000338045 WFDC10BQ8IUB3 73 aa10.53□□□□□ -0.72
LIMS1-202ENST00000338045 PRR34Q9NV39 138 aa10.53□□□□□ -0.72
LIMS1-202ENST00000338045 A0A087WZ39 114 aa10.53□□□□□ -0.72
LIMS1-202ENST00000338045 CLPSL2Q6UWE3 100 aa10.53□□□□□ -0.72
LIMS1-202ENST00000338045 C10orf126Q8N4M7 172 aa10.53□□□□□ -0.72
LIMS1-202ENST00000338045 NDUFA12Q9UI09 145 aa10.52□□□□□ -0.73
LIMS1-202ENST00000338045 TM2D2Q9BX73 214 aa10.51□□□□□ -0.73
LIMS1-202ENST00000338045 SPANXB1Q9NS25 103 aaPredicted RBP10.51□□□□□ -0.73
LIMS1-202ENST00000338045 SPCS1Q9Y6A9 102 aa10.51□□□□□ -0.73
LIMS1-202ENST00000338045 STAB2Q8WWQ8 2551 aa10.51□□□□□ -0.73
LIMS1-202ENST00000338045 XCL1P47992 114 aa10.5□□□□□ -0.73
LIMS1-202ENST00000338045 CEND1Q8N111 149 aa10.5□□□□□ -0.73
LIMS1-202ENST00000338045 LINC01561Q8N1V8 128 aa10.5□□□□□ -0.73
LIMS1-202ENST00000338045 KLK12Q9UKR0 248 aa10.5□□□□□ -0.73
LIMS1-202ENST00000338045 A0A0J9YXY3 114 aa10.49□□□□□ -0.73
LIMS1-202ENST00000338045 NDUFA1O15239 70 aa10.49□□□□□ -0.73
LIMS1-202ENST00000338045 CD164L2Q6UWJ8 174 aa10.49□□□□□ -0.73
LIMS1-202ENST00000338045 PRKDCP78527 4128 aaKnown RBP10.49□□□□□ -0.73
LIMS1-202ENST00000338045 F8W1H4 67 aa10.49□□□□□ -0.73
LIMS1-202ENST00000338045 IGHV3-30P01768 117 aa10.49□□□□□ -0.73
LIMS1-202ENST00000338045 IGHV3-33P01772 117 aa10.49□□□□□ -0.73
LIMS1-202ENST00000338045 IGHV3-30-5P0DP03 117 aa10.49□□□□□ -0.73
LIMS1-202ENST00000338045 C5orf38Q86SI9 138 aa10.49□□□□□ -0.73
LIMS1-202ENST00000338045 CHCHD10Q8WYQ3 142 aaPredicted RBP10.49□□□□□ -0.73
LIMS1-202ENST00000338045 HIST1H4GQ99525 98 aa10.49□□□□□ -0.73
LIMS1-202ENST00000338045 A0A1W2PPM0 123 aa10.48□□□□□ -0.73
LIMS1-202ENST00000338045 IGLL5B9A064 214 aa10.48□□□□□ -0.73
LIMS1-202ENST00000338045 FABP2P12104 132 aa10.48□□□□□ -0.73
LIMS1-202ENST00000338045 GCSHP23434 173 aa10.48□□□□□ -0.73
LIMS1-202ENST00000338045 LINC01556Q5JQF7 62 aa10.48□□□□□ -0.73
LIMS1-202ENST00000338045 ENHOQ6UWT2 76 aa10.48□□□□□ -0.73
LIMS1-202ENST00000338045 SPANXCQ9NY87 97 aa10.48□□□□□ -0.73
LIMS1-202ENST00000338045 FXYD2P54710 66 aa10.47□□□□□ -0.73
LIMS1-202ENST00000338045 ZNF625Q96I27 306 aaPredicted RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms