RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 HIST1H2BJP06899 126 aa10.32□□□□□ -0.76
CCDC28A-201ENST00000332797 HIST1H2BOP23527 126 aa10.32□□□□□ -0.76
CCDC28A-201ENST00000332797 HIST1H2BBP33778 126 aa10.32□□□□□ -0.76
CCDC28A-201ENST00000332797 HIST1H2BDP58876 126 aa10.32□□□□□ -0.76
CCDC28A-201ENST00000332797 HIST1H2BCP62807 126 aa10.32□□□□□ -0.76
CCDC28A-201ENST00000332797 PMCHL1Q16048 86 aa10.32□□□□□ -0.76
CCDC28A-201ENST00000332797 HIST2H2BEQ16778 126 aa10.32□□□□□ -0.76
CCDC28A-201ENST00000332797 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.32□□□□□ -0.76
CCDC28A-201ENST00000332797 HIST1H2BHQ93079 126 aa10.32□□□□□ -0.76
CCDC28A-201ENST00000332797 HIST1H2BNQ99877 126 aa10.32□□□□□ -0.76
CCDC28A-201ENST00000332797 HIST1H2BMQ99879 126 aa10.32□□□□□ -0.76
CCDC28A-201ENST00000332797 APOBP04114 4563 aaKnown RBP10.32□□□□□ -0.76
CCDC28A-201ENST00000332797 UBE2D1P51668 147 aa10.31□□□□□ -0.76
CCDC28A-201ENST00000332797 CNBPP62633 177 aaKnown RBP10.31□□□□□ -0.76
CCDC28A-201ENST00000332797 LINC00242Q5T6M2 205 aa10.31□□□□□ -0.76
CCDC28A-201ENST00000332797 RYR1P21817 5038 aa10.31□□□□□ -0.76
CCDC28A-201ENST00000332797 A0A096LNJ9 63 aa10.3□□□□□ -0.76
CCDC28A-201ENST00000332797 HBDP02042 147 aa10.3□□□□□ -0.76
CCDC28A-201ENST00000332797 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.3□□□□□ -0.76
CCDC28A-201ENST00000332797 IGHV3OR16-9A0A0B4J2B5 98 aa10.3□□□□□ -0.76
CCDC28A-201ENST00000332797 SLPIP03973 132 aa10.3□□□□□ -0.76
CCDC28A-201ENST00000332797 BAGE3Q86Y29 109 aa10.3□□□□□ -0.76
CCDC28A-201ENST00000332797 LINC00526Q96FQ7 95 aa10.3□□□□□ -0.76
CCDC28A-201ENST00000332797 ZNF561-AS1K7EIQ3 104 aa10.29□□□□□ -0.76
CCDC28A-201ENST00000332797 APOMO95445 188 aa10.29□□□□□ -0.76
CCDC28A-201ENST00000332797 COX6A2Q02221 97 aa10.29□□□□□ -0.76
CCDC28A-201ENST00000332797 C9orf163Q8N9P6 203 aa10.29□□□□□ -0.76
CCDC28A-201ENST00000332797 CHCHD1Q96BP2 118 aaKnown RBP10.29□□□□□ -0.76
CCDC28A-201ENST00000332797 HERC2O95714 4834 aa10.28□□□□□ -0.76
CCDC28A-201ENST00000332797 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.28□□□□□ -0.76
CCDC28A-201ENST00000332797 S100A6P06703 90 aa10.28□□□□□ -0.76
CCDC28A-201ENST00000332797 FAM30AQ9NZY2 134 aa10.28□□□□□ -0.76
CCDC28A-201ENST00000332797 DNAH8Q96JB1 4490 aa10.27□□□□□ -0.76
CCDC28A-201ENST00000332797 HAMPP81172 84 aa10.27□□□□□ -0.77
CCDC28A-201ENST00000332797 TMA7Q9Y2S6 64 aaKnown RBP10.27□□□□□ -0.77
CCDC28A-201ENST00000332797 XGP55808 180 aa10.26□□□□□ -0.77
CCDC28A-201ENST00000332797 PDZD11Q5EBL8 140 aa10.26□□□□□ -0.77
CCDC28A-201ENST00000332797 COA6Q5JTJ3 125 aaKnown RBP10.26□□□□□ -0.77
CCDC28A-201ENST00000332797 FAM19A3Q7Z5A8 133 aa10.26□□□□□ -0.77
CCDC28A-201ENST00000332797 ORAOV1Q8WV07 137 aa10.26□□□□□ -0.77
CCDC28A-201ENST00000332797 HSPG2P98160 4391 aa10.26□□□□□ -0.77
CCDC28A-201ENST00000332797 IGLV4-69A0A075B6H9 119 aa10.25□□□□□ -0.77
CCDC28A-201ENST00000332797 IGHV3-64A0A075B6Q5 118 aa10.25□□□□□ -0.77
CCDC28A-201ENST00000332797 A0A087WZ39 114 aa10.25□□□□□ -0.77
CCDC28A-201ENST00000332797 A0A0J9YXV3 536 aa10.25□□□□□ -0.77
CCDC28A-201ENST00000332797 NDUFA6P56556 154 aa10.25□□□□□ -0.77
CCDC28A-201ENST00000332797 SEC11AP67812 179 aa10.25□□□□□ -0.77
CCDC28A-201ENST00000332797 SPAG11BQ08648 103 aa10.25□□□□□ -0.77
CCDC28A-201ENST00000332797 PMVKQ15126 192 aa10.25□□□□□ -0.77
CCDC28A-201ENST00000332797 Q6ZSA8 131 aa10.25□□□□□ -0.77
CCDC28A-201ENST00000332797 OR10D4PQ8NGN7 298 aa10.25□□□□□ -0.77
CCDC28A-201ENST00000332797 CST9LQ9H4G1 147 aa10.25□□□□□ -0.77
CCDC28A-201ENST00000332797 HSBP1O75506 76 aa10.24□□□□□ -0.77
CCDC28A-201ENST00000332797 HERVK_113P63121 156 aa10.24□□□□□ -0.77
CCDC28A-201ENST00000332797 CARD19Q96LW7 228 aa10.24□□□□□ -0.77
CCDC28A-201ENST00000332797 GEMIN7Q9H840 131 aaKnown RBP10.24□□□□□ -0.77
CCDC28A-201ENST00000332797 SERF1AO75920 110 aa10.23□□□□□ -0.77
CCDC28A-201ENST00000332797 ATP5LO75964 103 aa10.23□□□□□ -0.77
CCDC28A-201ENST00000332797 SYCNQ0VAF6 134 aa10.23□□□□□ -0.77
CCDC28A-201ENST00000332797 SDIM1Q6ZPB5 146 aa10.23□□□□□ -0.77
CCDC28A-201ENST00000332797 FAM19A2Q8N3H0 131 aa10.23□□□□□ -0.77
CCDC28A-201ENST00000332797 CAMK2N2Q96S95 79 aa10.23□□□□□ -0.77
CCDC28A-201ENST00000332797 LINC00310P59036 64 aa10.22□□□□□ -0.77
CCDC28A-201ENST00000332797 CDKN2A-AS1Q9UH64 79 aa10.22□□□□□ -0.77
CCDC28A-201ENST00000332797 TINCRA0A1B0GVN0 87 aa10.21□□□□□ -0.78
CCDC28A-201ENST00000332797 Q6ZRU5 148 aa10.21□□□□□ -0.78
CCDC28A-201ENST00000332797 LINC01561Q8N1V8 128 aa10.21□□□□□ -0.78
CCDC28A-201ENST00000332797 LINC00469Q8N7U9 141 aa10.21□□□□□ -0.78
CCDC28A-201ENST00000332797 C2orf48Q96LS8 159 aa10.21□□□□□ -0.78
CCDC28A-201ENST00000332797 C5orf52A6NGY3 159 aa10.2□□□□□ -0.78
CCDC28A-201ENST00000332797 PACRGQ96M98 296 aaPredicted RBP10.2□□□□□ -0.78
CCDC28A-201ENST00000332797 SNRPEP62304 92 aaKnown RBP10.19□□□□□ -0.78
CCDC28A-201ENST00000332797 SCXQ7RTU7 201 aa10.19□□□□□ -0.78
CCDC28A-201ENST00000332797 CHAC1Q9BUX1 264 aa10.19□□□□□ -0.78
CCDC28A-201ENST00000332797 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.19□□□□□ -0.78
CCDC28A-201ENST00000332797 PANO1I0J062 215 aa10.18□□□□□ -0.78
CCDC28A-201ENST00000332797 NUPR1O60356 82 aa10.18□□□□□ -0.78
CCDC28A-201ENST00000332797 IFI27L1Q96BM0 104 aa10.18□□□□□ -0.78
CCDC28A-201ENST00000332797 NDUFA1O15239 70 aa10.17□□□□□ -0.78
CCDC28A-201ENST00000332797 SMR3BP02814 79 aaPredicted RBP10.17□□□□□ -0.78
CCDC28A-201ENST00000332797 CHTF8P0CG12 524 aa10.17□□□□□ -0.78
CCDC28A-201ENST00000332797 IGLC3P0DOY3 106 aa10.17□□□□□ -0.78
CCDC28A-201ENST00000332797 KRTAP17-1Q9BYP8 105 aa10.17□□□□□ -0.78
CCDC28A-201ENST00000332797 TOMM7Q9P0U1 55 aa10.17□□□□□ -0.78
CCDC28A-201ENST00000332797 IGLV5-45A0A087WSX0 123 aa10.17□□□□□ -0.78
CCDC28A-201ENST00000332797 F8WDY8 70 aa10.17□□□□□ -0.78
CCDC28A-201ENST00000332797 PRSS2P07478 247 aa10.17□□□□□ -0.78
CCDC28A-201ENST00000332797 KIAA0087Q14695 138 aa10.17□□□□□ -0.78
CCDC28A-201ENST00000332797 CIRBP-AS1Q8TBR5 109 aa10.17□□□□□ -0.78
CCDC28A-201ENST00000332797 PKIGQ9Y2B9 76 aa10.17□□□□□ -0.78
CCDC28A-201ENST00000332797 IGKV2-24A0A0C4DH68 120 aa10.16□□□□□ -0.78
CCDC28A-201ENST00000332797 LEPROTL1O95214 131 aa10.16□□□□□ -0.78
CCDC28A-201ENST00000332797 Q8N1X5 172 aa10.16□□□□□ -0.78
CCDC28A-201ENST00000332797 SMIM1B2RUZ4 78 aa10.15□□□□□ -0.78
CCDC28A-201ENST00000332797 SPINK8P0C7L1 97 aa10.15□□□□□ -0.78
CCDC28A-201ENST00000332797 S100A2P29034 98 aa10.15□□□□□ -0.78
CCDC28A-201ENST00000332797 C10orf25Q5T742 122 aa10.15□□□□□ -0.78
CCDC28A-201ENST00000332797 C2orf82Q6UX34 121 aa10.15□□□□□ -0.78
CCDC28A-201ENST00000332797 UNQ6190/PRO20217Q6UXQ8 127 aa10.15□□□□□ -0.78
CCDC28A-201ENST00000332797 HIST3H2BBQ8N257 126 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms