RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 C1orf43Q9BWL3 253 aa9.68□□□□□ -0.86
CCDC88C-201ENST00000331194 K7EQG2 157 aa9.67□□□□□ -0.86
CCDC88C-201ENST00000331194 GCN1Q92616 2671 aaKnown RBP9.67□□□□□ -0.86
CCDC88C-201ENST00000331194 AKAP9Q99996 3911 aa9.67□□□□□ -0.86
CCDC88C-201ENST00000331194 IGLV1-40P01703 118 aa9.67□□□□□ -0.86
CCDC88C-201ENST00000331194 ATP5G1P05496 136 aa9.67□□□□□ -0.86
CCDC88C-201ENST00000331194 MALP21145 153 aa9.67□□□□□ -0.86
CCDC88C-201ENST00000331194 CFHR3Q02985 330 aa9.67□□□□□ -0.86
CCDC88C-201ENST00000331194 A0A087WYN8 130 aa9.66□□□□□ -0.86
CCDC88C-201ENST00000331194 MRAPQ8TCY5 172 aa9.66□□□□□ -0.86
CCDC88C-201ENST00000331194 PKIGQ9Y2B9 76 aa9.66□□□□□ -0.86
CCDC88C-201ENST00000331194 J3QLI3 93 aa9.66□□□□□ -0.86
CCDC88C-201ENST00000331194 ATOX1O00244 68 aa9.66□□□□□ -0.86
CCDC88C-201ENST00000331194 TMEM258P61165 79 aa9.66□□□□□ -0.86
CCDC88C-201ENST00000331194 SMIM1B2RUZ4 78 aa9.65□□□□□ -0.86
CCDC88C-201ENST00000331194 HIST2H2BCQ6DN03 193 aa9.65□□□□□ -0.86
CCDC88C-201ENST00000331194 CXCL5P42830 114 aa9.65□□□□□ -0.86
CCDC88C-201ENST00000331194 LINC00846Q9NV44 126 aa9.65□□□□□ -0.86
CCDC88C-201ENST00000331194 K7EMT4 169 aa9.65□□□□□ -0.87
CCDC88C-201ENST00000331194 HIST1H4AP62805 103 aaKnown RBP9.65□□□□□ -0.87
CCDC88C-201ENST00000331194 IGLV5-39A0A0G2JS06 123 aa9.64□□□□□ -0.87
CCDC88C-201ENST00000331194 LINC00337Q8N6G1 96 aa9.64□□□□□ -0.87
CCDC88C-201ENST00000331194 FLNAP21333 2647 aaKnown RBP9.64□□□□□ -0.87
CCDC88C-201ENST00000331194 NIPBLQ6KC79 2804 aaeCLIP9.64□□□□□ -0.87
CCDC88C-201ENST00000331194 WNK1Q9H4A3 2382 aa9.64□□□□□ -0.87
CCDC88C-201ENST00000331194 IGLV5-45A0A087WSX0 123 aa9.64□□□□□ -0.87
CCDC88C-201ENST00000331194 SLPIP03973 132 aa9.64□□□□□ -0.87
CCDC88C-201ENST00000331194 RBMY1BA6NDE4 496 aaKnown RBP9.63□□□□□ -0.87
CCDC88C-201ENST00000331194 A6NDX4 124 aa9.63□□□□□ -0.87
CCDC88C-201ENST00000331194 RBMY1EA6NEQ0 496 aaKnown RBP9.63□□□□□ -0.87
CCDC88C-201ENST00000331194 RBMY1DP0C7P1 496 aaKnown RBP9.63□□□□□ -0.87
CCDC88C-201ENST00000331194 ITPR3Q14573 2671 aa9.63□□□□□ -0.87
CCDC88C-201ENST00000331194 DNAL4O96015 105 aa9.62□□□□□ -0.87
CCDC88C-201ENST00000331194 RPL18AQ02543 176 aaKnown RBP9.62□□□□□ -0.87
CCDC88C-201ENST00000331194 Q96MF0 132 aa9.62□□□□□ -0.87
CCDC88C-201ENST00000331194 FLNBO75369 2602 aaKnown RBP9.62□□□□□ -0.87
CCDC88C-201ENST00000331194 NCR3O14931 201 aa9.62□□□□□ -0.87
CCDC88C-201ENST00000331194 INAFM2P0DMQ5 153 aa9.62□□□□□ -0.87
CCDC88C-201ENST00000331194 RPL35AP18077 110 aaKnown RBP9.62□□□□□ -0.87
CCDC88C-201ENST00000331194 DEFB131AP59861 70 aa9.62□□□□□ -0.87
CCDC88C-201ENST00000331194 H3BUA1 57 aa9.62□□□□□ -0.87
CCDC88C-201ENST00000331194 HIST2H2BDQ6DRA6 164 aa9.62□□□□□ -0.87
CCDC88C-201ENST00000331194 LINC01561Q8N1V8 128 aa9.62□□□□□ -0.87
CCDC88C-201ENST00000331194 WFDC9Q8NEX5 89 aa9.62□□□□□ -0.87
CCDC88C-201ENST00000331194 LINC00336Q6ZUF6 198 aa9.61□□□□□ -0.87
CCDC88C-201ENST00000331194 IGKV2-28A0A075B6P5 120 aa9.61□□□□□ -0.87
CCDC88C-201ENST00000331194 IGHV4-61A0A0C4DH41 118 aa9.61□□□□□ -0.87
CCDC88C-201ENST00000331194 IGKV2D-28P01615 120 aa9.61□□□□□ -0.87
CCDC88C-201ENST00000331194 JMJD1CQ15652 2540 aa9.61□□□□□ -0.87
CCDC88C-201ENST00000331194 IGKV3OR2-268A0A0C4DH90 116 aa9.6□□□□□ -0.87
CCDC88C-201ENST00000331194 IGHV3-53P01767 116 aa9.6□□□□□ -0.87
CCDC88C-201ENST00000331194 HILS1P60008 231 aa9.6□□□□□ -0.87
CCDC88C-201ENST00000331194 MIR7-3HGQ8N6C7 128 aa9.6□□□□□ -0.87
CCDC88C-201ENST00000331194 SMIM11BQ8TCY0 68 aa9.6□□□□□ -0.87
CCDC88C-201ENST00000331194 PFN2P35080 140 aa9.59□□□□□ -0.87
CCDC88C-201ENST00000331194 FAM222AQ5U5X8 452 aa9.59□□□□□ -0.87
CCDC88C-201ENST00000331194 TOMM7Q9P0U1 55 aa9.59□□□□□ -0.87
CCDC88C-201ENST00000331194 PSMB8P28062 276 aa9.59□□□□□ -0.87
CCDC88C-201ENST00000331194 UPK3BQ9BT76 320 aa9.59□□□□□ -0.87
CCDC88C-201ENST00000331194 AVPP01185 164 aa9.58□□□□□ -0.88
CCDC88C-201ENST00000331194 CRPP02741 224 aa9.58□□□□□ -0.88
CCDC88C-201ENST00000331194 SERP2Q8N6R1 65 aa9.58□□□□□ -0.88
CCDC88C-201ENST00000331194 USP17L23D6RBM5 183 aa9.58□□□□□ -0.88
CCDC88C-201ENST00000331194 LECT2O14960 151 aa9.58□□□□□ -0.88
CCDC88C-201ENST00000331194 DEFB136Q30KP8 78 aa9.58□□□□□ -0.88
CCDC88C-201ENST00000331194 NTM-AS1Q6ZSK4 140 aa9.58□□□□□ -0.88
CCDC88C-201ENST00000331194 CCL19Q99731 98 aa9.57□□□□□ -0.88
CCDC88C-201ENST00000331194 SND1-IT1Q9HBX3 110 aa9.57□□□□□ -0.88
CCDC88C-201ENST00000331194 RPL28P46779 137 aaKnown RBP9.57□□□□□ -0.88
CCDC88C-201ENST00000331194 PRO0628Q9UI54 55 aa9.57□□□□□ -0.88
CCDC88C-201ENST00000331194 KRTAP10-9P60411 292 aa9.56□□□□□ -0.88
CCDC88C-201ENST00000331194 ZNF843Q8N446 348 aa9.56□□□□□ -0.88
CCDC88C-201ENST00000331194 F8WDY8 70 aa9.56□□□□□ -0.88
CCDC88C-201ENST00000331194 ZNF415Q09FC8 603 aa9.56□□□□□ -0.88
CCDC88C-201ENST00000331194 C18orf65Q6ZTR6 163 aa9.56□□□□□ -0.88
CCDC88C-201ENST00000331194 UNC79Q9P2D8 2635 aa9.55□□□□□ -0.88
CCDC88C-201ENST00000331194 IGHV4-30-2A0A087WSY4 118 aa9.55□□□□□ -0.88
CCDC88C-201ENST00000331194 IGHV4-59P01825 116 aa9.55□□□□□ -0.88
CCDC88C-201ENST00000331194 FHL2Q14192 279 aa9.55□□□□□ -0.88
CCDC88C-201ENST00000331194 C11orf72Q8NBR9 251 aa9.55□□□□□ -0.88
CCDC88C-201ENST00000331194 LINC00158P58513 81 aa9.55□□□□□ -0.88
CCDC88C-201ENST00000331194 TRAV13-2A0A0B4J235 113 aa9.54□□□□□ -0.88
CCDC88C-201ENST00000331194 RPL36AP83881 106 aaKnown RBP9.54□□□□□ -0.88
CCDC88C-201ENST00000331194 WFDC11Q8NEX6 87 aa9.54□□□□□ -0.88
CCDC88C-201ENST00000331194 RPL36ALQ969Q0 106 aaKnown RBP9.54□□□□□ -0.88
CCDC88C-201ENST00000331194 TRAV23DV6A0A075B6W5 121 aa9.53□□□□□ -0.88
CCDC88C-201ENST00000331194 SLURP1P55000 103 aa9.53□□□□□ -0.88
CCDC88C-201ENST00000331194 Q6JHZ5 121 aa9.53□□□□□ -0.88
CCDC88C-201ENST00000331194 COPS9Q8WXC6 57 aa9.53□□□□□ -0.88
CCDC88C-201ENST00000331194 UBE2E2Q96LR5 201 aa9.53□□□□□ -0.88
CCDC88C-201ENST00000331194 XCL2Q9UBD3 114 aa9.53□□□□□ -0.88
CCDC88C-201ENST00000331194 CDC42SE2Q9NRR3 84 aa9.53□□□□□ -0.88
CCDC88C-201ENST00000331194 CCL18P55774 89 aa9.52□□□□□ -0.89
CCDC88C-201ENST00000331194 TRGV1A0A0A0MS02 117 aa9.52□□□□□ -0.89
CCDC88C-201ENST00000331194 C11orf68Q9H3H3 251 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-201ENST00000331194 A0A0U1RQV1 116 aa9.51□□□□□ -0.89
CCDC88C-201ENST00000331194 FAM19A1Q7Z5A9 133 aa9.51□□□□□ -0.89
CCDC88C-201ENST00000331194 FAM236DA0A1B0GTK5 79 aa9.5□□□□□ -0.89
CCDC88C-201ENST00000331194 FAM236CP0DP71 79 aa9.5□□□□□ -0.89
CCDC88C-201ENST00000331194 SEC61GP60059 68 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms