RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 MAPKAPK5-AS1Q8N8E1 139 aa10.66□□□□□ -0.7
COL7A1-201ENST00000328333 CXCL6P80162 114 aa10.65□□□□□ -0.7
COL7A1-201ENST00000328333 MUC22E2RYF6 1773 aaPredicted RBP10.65□□□□□ -0.7
COL7A1-201ENST00000328333 CEMP1Q6PRD7 247 aaPredicted RBP10.65□□□□□ -0.7
COL7A1-201ENST00000328333 SCXQ7RTU7 201 aa10.65□□□□□ -0.7
COL7A1-201ENST00000328333 A0A087WZ39 114 aa10.65□□□□□ -0.7
COL7A1-201ENST00000328333 C11orf45Q8TAV5 145 aa10.65□□□□□ -0.71
COL7A1-201ENST00000328333 IGLV2-11P01706 119 aa10.65□□□□□ -0.71
COL7A1-201ENST00000328333 EBI3Q14213 229 aa10.65□□□□□ -0.71
COL7A1-201ENST00000328333 E7EUB6 86 aa10.64□□□□□ -0.71
COL7A1-201ENST00000328333 K7EQG2 157 aa10.64□□□□□ -0.71
COL7A1-201ENST00000328333 FBXL19-AS1Q494R0 122 aa10.64□□□□□ -0.71
COL7A1-201ENST00000328333 C10orf25Q5T742 122 aa10.64□□□□□ -0.71
COL7A1-201ENST00000328333 RPS28P62857 69 aaKnown RBP10.64□□□□□ -0.71
COL7A1-201ENST00000328333 DAZAP2Q15038 168 aaPredicted RBP10.64□□□□□ -0.71
COL7A1-201ENST00000328333 TP53TG3Q9ULZ0 132 aa10.64□□□□□ -0.71
COL7A1-201ENST00000328333 BPTFQ12830 3046 aa10.64□□□□□ -0.71
COL7A1-201ENST00000328333 F8WDY8 70 aa10.63□□□□□ -0.71
COL7A1-201ENST00000328333 SMIM11BQ8TCY0 68 aa10.63□□□□□ -0.71
COL7A1-201ENST00000328333 SLPIP03973 132 aa10.63□□□□□ -0.71
COL7A1-201ENST00000328333 TSHBP01222 138 aa10.63□□□□□ -0.71
COL7A1-201ENST00000328333 SYCNQ0VAF6 134 aa10.63□□□□□ -0.71
COL7A1-201ENST00000328333 ZFAND3Q9H8U3 227 aa10.63□□□□□ -0.71
COL7A1-201ENST00000328333 PIP4P1Q86T03 277 aa10.62□□□□□ -0.71
COL7A1-201ENST00000328333 Q8N814 137 aa10.62□□□□□ -0.71
COL7A1-201ENST00000328333 TRBV7-6A0A0J9YX20 115 aa10.62□□□□□ -0.71
COL7A1-201ENST00000328333 IGHV4-61A0A0C4DH41 118 aa10.62□□□□□ -0.71
COL7A1-201ENST00000328333 TRBV10-3A0A0K0K1G6 114 aa10.62□□□□□ -0.71
COL7A1-201ENST00000328333 UBE2D1P51668 147 aa10.61□□□□□ -0.71
COL7A1-201ENST00000328333 Q6ZTI0 123 aa10.61□□□□□ -0.71
COL7A1-201ENST00000328333 TRBV7-7A0A0K0K1E9 115 aa10.61□□□□□ -0.71
COL7A1-201ENST00000328333 hDV103S1A0JD37 113 aa10.61□□□□□ -0.71
COL7A1-201ENST00000328333 COL4A3Q01955 1670 aa10.61□□□□□ -0.71
COL7A1-201ENST00000328333 HILS1P60008 231 aa10.6□□□□□ -0.71
COL7A1-201ENST00000328333 KLLNB2CW77 178 aa10.6□□□□□ -0.71
COL7A1-201ENST00000328333 CELA1Q9UNI1 258 aa10.6□□□□□ -0.71
COL7A1-201ENST00000328333 IGKV2-24A0A0C4DH68 120 aa10.6□□□□□ -0.71
COL7A1-201ENST00000328333 TNFRSF13BO14836 293 aaPredicted RBP10.59□□□□□ -0.71
COL7A1-201ENST00000328333 WFDC13Q8IUB5 93 aa10.59□□□□□ -0.71
COL7A1-201ENST00000328333 ZNF295-AS1Q8N0V1 137 aa10.59□□□□□ -0.71
COL7A1-201ENST00000328333 Q8N7P7 452 aa10.59□□□□□ -0.71
COL7A1-201ENST00000328333 A0A1B0GW54 56 aa10.59□□□□□ -0.71
COL7A1-201ENST00000328333 IGLV4-69A0A075B6H9 119 aa10.58□□□□□ -0.72
COL7A1-201ENST00000328333 ESRGQ1W209 222 aa10.58□□□□□ -0.72
COL7A1-201ENST00000328333 FAM30AQ9NZY2 134 aa10.58□□□□□ -0.72
COL7A1-201ENST00000328333 A6NDX4 124 aa10.57□□□□□ -0.72
COL7A1-201ENST00000328333 POLR2KP53803 58 aaKnown RBP10.57□□□□□ -0.72
COL7A1-201ENST00000328333 TMEM254Q8TBM7 123 aa10.57□□□□□ -0.72
COL7A1-201ENST00000328333 IGHV4-30-2A0A087WSY4 118 aa10.57□□□□□ -0.72
COL7A1-201ENST00000328333 Q8N3U1 123 aa10.57□□□□□ -0.72
COL7A1-201ENST00000328333 SPRNQ5BIV9 151 aa10.56□□□□□ -0.72
COL7A1-201ENST00000328333 BCE1O60756 84 aa10.56□□□□□ -0.72
COL7A1-201ENST00000328333 C22orf34Q6ZV56 151 aa10.56□□□□□ -0.72
COL7A1-201ENST00000328333 SERTAD4-AS1Q5TG53 156 aa10.56□□□□□ -0.72
COL7A1-201ENST00000328333 J3QKU1 62 aa10.55□□□□□ -0.72
COL7A1-201ENST00000328333 LELP1Q5T871 98 aa10.55□□□□□ -0.72
COL7A1-201ENST00000328333 ZFP36P26651 326 aaKnown RBP10.55□□□□□ -0.72
COL7A1-201ENST00000328333 LY6LH3BQJ8 138 aa10.55□□□□□ -0.72
COL7A1-201ENST00000328333 CHCHD7Q9BUK0 85 aa10.55□□□□□ -0.72
COL7A1-201ENST00000328333 CRIP1P50238 77 aa10.55□□□□□ -0.72
COL7A1-201ENST00000328333 A8MZ25 164 aa10.54□□□□□ -0.72
COL7A1-201ENST00000328333 AKAP13Q12802 2813 aa10.54□□□□□ -0.72
COL7A1-201ENST00000328333 DEFB114Q30KQ6 69 aa10.54□□□□□ -0.72
COL7A1-201ENST00000328333 XAGE1AQ9HD64 81 aa10.54□□□□□ -0.72
COL7A1-201ENST00000328333 Q6ZVQ6 151 aa10.53□□□□□ -0.72
COL7A1-201ENST00000328333 IGKV2-28A0A075B6P5 120 aa10.53□□□□□ -0.72
COL7A1-201ENST00000328333 IGKV2D-28P01615 120 aa10.53□□□□□ -0.72
COL7A1-201ENST00000328333 CRYGAP11844 174 aa10.53□□□□□ -0.72
COL7A1-201ENST00000328333 C1orf137Q5JT78 98 aa10.52□□□□□ -0.72
COL7A1-201ENST00000328333 IGIPA6NJ69 53 aa10.52□□□□□ -0.72
COL7A1-201ENST00000328333 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.52□□□□□ -0.73
COL7A1-201ENST00000328333 ESM1Q9NQ30 184 aa10.52□□□□□ -0.73
COL7A1-201ENST00000328333 PSPHP1O15172 72 aa10.51□□□□□ -0.73
COL7A1-201ENST00000328333 RNASE3P12724 160 aaKnown RBP10.51□□□□□ -0.73
COL7A1-201ENST00000328333 A0A0J9YWU9 116 aa10.5□□□□□ -0.73
COL7A1-201ENST00000328333 DNAJC9-AS1A6NH13 148 aa10.5□□□□□ -0.73
COL7A1-201ENST00000328333 DCANP1Q8TF63 244 aa10.5□□□□□ -0.73
COL7A1-201ENST00000328333 LINC00208Q96KT6 92 aa10.5□□□□□ -0.73
COL7A1-201ENST00000328333 TP53AIP1Q9HCN2 124 aa10.5□□□□□ -0.73
COL7A1-201ENST00000328333 HECTD1Q9ULT8 2610 aa10.5□□□□□ -0.73
COL7A1-201ENST00000328333 PRR4Q16378 134 aa10.5□□□□□ -0.73
COL7A1-201ENST00000328333 DEFB131BA0A096LNP1 70 aa10.5□□□□□ -0.73
COL7A1-201ENST00000328333 EGFEM1PQ0D2K5 195 aa10.5□□□□□ -0.73
COL7A1-201ENST00000328333 BRWD1-AS2P59051 145 aa10.49□□□□□ -0.73
COL7A1-201ENST00000328333 HCG22E2RYF7 251 aa10.48□□□□□ -0.73
COL7A1-201ENST00000328333 Q6ZS46 218 aa10.48□□□□□ -0.73
COL7A1-201ENST00000328333 MAST4O15021 2626 aa10.48□□□□□ -0.73
COL7A1-201ENST00000328333 SOSTDC1Q6X4U4 206 aa10.47□□□□□ -0.73
COL7A1-201ENST00000328333 DEFB4AO15263 64 aa10.47□□□□□ -0.73
COL7A1-201ENST00000328333 CDC42SE2Q9NRR3 84 aa10.47□□□□□ -0.73
COL7A1-201ENST00000328333 LINC00959A0A1B0GUT2 108 aa10.47□□□□□ -0.73
COL7A1-201ENST00000328333 LINC01561Q8N1V8 128 aa10.47□□□□□ -0.73
COL7A1-201ENST00000328333 ATRQ13535 2644 aa10.47□□□□□ -0.73
COL7A1-201ENST00000328333 DEFB1P60022 68 aa10.46□□□□□ -0.73
COL7A1-201ENST00000328333 COX8CQ7Z4L0 72 aa10.46□□□□□ -0.74
COL7A1-201ENST00000328333 GRNP28799 593 aaKnown RBP10.46□□□□□ -0.74
COL7A1-201ENST00000328333 TRAV10A0A0B4J240 114 aa10.46□□□□□ -0.74
COL7A1-201ENST00000328333 H0Y9P7 68 aa10.46□□□□□ -0.74
COL7A1-201ENST00000328333 REG3GQ6UW15 175 aa10.45□□□□□ -0.74
COL7A1-201ENST00000328333 Q8N6K4 173 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms