RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PSPHP1O15172 72 aa10.23□□□□□ -0.77
CSPG4-201ENST00000308508 POM121L12Q8N7R1 296 aa10.23□□□□□ -0.77
CSPG4-201ENST00000308508 LINC00959A0A1B0GUT2 108 aa10.23□□□□□ -0.77
CSPG4-201ENST00000308508 LINC01548A6NM66 108 aa10.23□□□□□ -0.77
CSPG4-201ENST00000308508 FBXL19-AS1Q494R0 122 aa10.23□□□□□ -0.77
CSPG4-201ENST00000308508 Q8N814 137 aa10.23□□□□□ -0.77
CSPG4-201ENST00000308508 ESRGQ1W209 222 aa10.23□□□□□ -0.77
CSPG4-201ENST00000308508 LINC00474Q9P2X8 69 aa10.23□□□□□ -0.77
CSPG4-201ENST00000308508 IGLV9-49A0A0B4J1Y8 123 aa10.22□□□□□ -0.77
CSPG4-201ENST00000308508 RNASE3P12724 160 aaKnown RBP10.22□□□□□ -0.77
CSPG4-201ENST00000308508 NRGNQ92686 78 aa10.22□□□□□ -0.77
CSPG4-201ENST00000308508 C2CD3Q4AC94 2353 aa10.22□□□□□ -0.77
CSPG4-201ENST00000308508 CSDC2Q9Y534 153 aaKnown RBP10.22□□□□□ -0.77
CSPG4-201ENST00000308508 LELP1Q5T871 98 aa10.22□□□□□ -0.77
CSPG4-201ENST00000308508 RPL37AP8A6NKH3 93 aa10.21□□□□□ -0.77
CSPG4-201ENST00000308508 TRBV7-7A0A0K0K1E9 115 aa10.21□□□□□ -0.77
CSPG4-201ENST00000308508 FSTL3O95633 263 aa10.21□□□□□ -0.77
CSPG4-201ENST00000308508 PLA2G5P39877 138 aa10.21□□□□□ -0.77
CSPG4-201ENST00000308508 RAI1Q7Z5J4 1906 aaPredicted RBP10.21□□□□□ -0.77
CSPG4-201ENST00000308508 POLR2KP53803 58 aaKnown RBP10.21□□□□□ -0.78
CSPG4-201ENST00000308508 Q6YL49 198 aa10.21□□□□□ -0.78
CSPG4-201ENST00000308508 RPL28P46779 137 aaKnown RBP10.2□□□□□ -0.78
CSPG4-201ENST00000308508 CNFNQ9BYD5 112 aa10.2□□□□□ -0.78
CSPG4-201ENST00000308508 BBC3Q96PG8 261 aaPredicted RBP10.19□□□□□ -0.78
CSPG4-201ENST00000308508 MSMPQ1L6U9 139 aa10.19□□□□□ -0.78
CSPG4-201ENST00000308508 CPAMD8Q8IZJ3 1885 aa10.19□□□□□ -0.78
CSPG4-201ENST00000308508 Q6ZPA2 131 aa10.19□□□□□ -0.78
CSPG4-201ENST00000308508 PLAC8L1A1L4L8 177 aa10.18□□□□□ -0.78
CSPG4-201ENST00000308508 Q8N3U1 123 aa10.18□□□□□ -0.78
CSPG4-201ENST00000308508 C1orf137Q5JT78 98 aa10.18□□□□□ -0.78
CSPG4-201ENST00000308508 KLLNB2CW77 178 aa10.18□□□□□ -0.78
CSPG4-201ENST00000308508 COL5A1P20908 1838 aaPredicted RBP10.18□□□□□ -0.78
CSPG4-201ENST00000308508 ACACBO00763 2458 aa10.18□□□□□ -0.78
CSPG4-201ENST00000308508 PTPRSQ13332 1948 aa10.18□□□□□ -0.78
CSPG4-201ENST00000308508 PTPRBP23467 1997 aa10.17□□□□□ -0.78
CSPG4-201ENST00000308508 TRAV10A0A0B4J240 114 aa10.17□□□□□ -0.78
CSPG4-201ENST00000308508 MRGPRG-AS1Q2M3A8 158 aa10.17□□□□□ -0.78
CSPG4-201ENST00000308508 LMO4P61968 165 aa10.17□□□□□ -0.78
CSPG4-201ENST00000308508 LINC01547P58512 204 aaPredicted RBP10.17□□□□□ -0.78
CSPG4-201ENST00000308508 CDC42SE2Q9NRR3 84 aa10.17□□□□□ -0.78
CSPG4-201ENST00000308508 A0A087WVE0 104 aa10.16□□□□□ -0.78
CSPG4-201ENST00000308508 NANOS2P60321 138 aaKnown RBP10.16□□□□□ -0.78
CSPG4-201ENST00000308508 COL4A3Q01955 1670 aa10.16□□□□□ -0.78
CSPG4-201ENST00000308508 IGIPA6NJ69 53 aa10.16□□□□□ -0.78
CSPG4-201ENST00000308508 PRO0628Q9UI54 55 aa10.16□□□□□ -0.78
CSPG4-201ENST00000308508 C1orf229Q6ZS94 237 aaPredicted RBP10.16□□□□□ -0.78
CSPG4-201ENST00000308508 MYO18BQ8IUG5 2567 aa10.15□□□□□ -0.78
CSPG4-201ENST00000308508 LOC100131303A0A0U1RQF7 123 aa10.15□□□□□ -0.78
CSPG4-201ENST00000308508 KPRPQ5T749 579 aaPredicted RBP10.15□□□□□ -0.78
CSPG4-201ENST00000308508 H0Y9P7 68 aa10.14□□□□□ -0.79
CSPG4-201ENST00000308508 ADAMTS20P59510 1910 aa10.14□□□□□ -0.79
CSPG4-201ENST00000308508 CYSRT1A8MQ03 144 aa10.14□□□□□ -0.79
CSPG4-201ENST00000308508 A0A087WYN8 130 aa10.13□□□□□ -0.79
CSPG4-201ENST00000308508 LIMD2Q9BT23 127 aa10.13□□□□□ -0.79
CSPG4-201ENST00000308508 BEAN1Q3B7T3 259 aa10.13□□□□□ -0.79
CSPG4-201ENST00000308508 TMEM254Q8TBM7 123 aa10.12□□□□□ -0.79
CSPG4-201ENST00000308508 hDV103S1A0JD37 113 aa10.12□□□□□ -0.79
CSPG4-201ENST00000308508 CRIP2P52943 208 aaPredicted RBP10.12□□□□□ -0.79
CSPG4-201ENST00000308508 PRR9Q5T870 116 aa10.12□□□□□ -0.79
CSPG4-201ENST00000308508 ZNF843Q8N446 348 aa10.12□□□□□ -0.79
CSPG4-201ENST00000308508 LRP4O75096 1905 aa10.12□□□□□ -0.79
CSPG4-201ENST00000308508 SERTAD4-AS1Q5TG53 156 aa10.12□□□□□ -0.79
CSPG4-201ENST00000308508 REG3GQ6UW15 175 aa10.12□□□□□ -0.79
CSPG4-201ENST00000308508 MUC6Q6W4X9 2439 aa10.11□□□□□ -0.79
CSPG4-201ENST00000308508 CACNA1AO00555 2505 aa10.11□□□□□ -0.79
CSPG4-201ENST00000308508 DOPEY1Q5JWR5 2465 aa10.11□□□□□ -0.79
CSPG4-201ENST00000308508 LINC00575Q6W349 94 aa10.11□□□□□ -0.79
CSPG4-201ENST00000308508 CRYGAP11844 174 aa10.1□□□□□ -0.79
CSPG4-201ENST00000308508 C11orf21Q9P2W6 132 aa10.1□□□□□ -0.79
CSPG4-201ENST00000308508 IGHV6-1A0A0B4J1U7 121 aa10.1□□□□□ -0.79
CSPG4-201ENST00000308508 LINC00242Q5T6M2 205 aa10.1□□□□□ -0.79
CSPG4-201ENST00000308508 CRIP3Q6Q6R5 217 aa10.1□□□□□ -0.79
CSPG4-201ENST00000308508 TRBV10-3A0A0K0K1G6 114 aa10.1□□□□□ -0.79
CSPG4-201ENST00000308508 EGFEM1PQ0D2K5 195 aa10.1□□□□□ -0.79
CSPG4-201ENST00000308508 GAS8-AS1O95177 125 aa10.09□□□□□ -0.79
CSPG4-201ENST00000308508 LINC00482Q8N8I6 264 aa10.09□□□□□ -0.79
CSPG4-201ENST00000308508 SMIM1B2RUZ4 78 aa10.09□□□□□ -0.79
CSPG4-201ENST00000308508 CXCL6P80162 114 aa10.09□□□□□ -0.79
CSPG4-201ENST00000308508 PCOTHQ58A44 107 aa10.08□□□□□ -0.8
CSPG4-201ENST00000308508 PSMG3-AS1Q96PY0 264 aa10.08□□□□□ -0.8
CSPG4-201ENST00000308508 HCG22E2RYF7 251 aa10.07□□□□□ -0.8
CSPG4-201ENST00000308508 X6R8D5 127 aa10.07□□□□□ -0.8
CSPG4-201ENST00000308508 PRORYQ9H606 182 aa10.06□□□□□ -0.8
CSPG4-201ENST00000308508 CIRBP-AS1Q8TBR5 109 aa10.06□□□□□ -0.8
CSPG4-201ENST00000308508 LINC00310P59036 64 aa10.06□□□□□ -0.8
CSPG4-201ENST00000308508 ZFHX2Q9C0A1 2572 aaPredicted RBP10.06□□□□□ -0.8
CSPG4-201ENST00000308508 BDP1A6H8Y1 2624 aa10.05□□□□□ -0.8
CSPG4-201ENST00000308508 ABCA2Q9BZC7 2435 aa10.05□□□□□ -0.8
CSPG4-201ENST00000308508 UNQ6190/PRO20217Q6UXQ8 127 aa10.05□□□□□ -0.8
CSPG4-201ENST00000308508 Q8N6K4 173 aa10.04□□□□□ -0.8
CSPG4-201ENST00000308508 Q6ZSV7 163 aa10.04□□□□□ -0.8
CSPG4-201ENST00000308508 IGLV2-18A0A075B6J9 118 aa10.04□□□□□ -0.8
CSPG4-201ENST00000308508 COX6A2Q02221 97 aa10.04□□□□□ -0.8
CSPG4-201ENST00000308508 Q8NA96 180 aa10.04□□□□□ -0.8
CSPG4-201ENST00000308508 ADAMTSL4-AS1Q5T5F5 129 aa10.03□□□□□ -0.8
CSPG4-201ENST00000308508 SPAG11AQ6PDA7 123 aa10.03□□□□□ -0.8
CSPG4-201ENST00000308508 CHCHD7Q9BUK0 85 aa10.03□□□□□ -0.8
CSPG4-201ENST00000308508 TSPEAR-AS2P59090 65 aa10.03□□□□□ -0.8
CSPG4-201ENST00000308508 F8WDY8 70 aa10.03□□□□□ -0.8
CSPG4-201ENST00000308508 C9orf116Q5BN46 136 aaPredicted RBP10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms