RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 MUC2Q02817 5179 aa8.91□□□□□ -0.98
CCDC88B-201ENST00000301897 IGHV3OR16-9A0A0B4J2B5 98 aa8.9□□□□□ -0.98
CCDC88B-201ENST00000301897 SMIM7Q9BQ49 75 aa8.9□□□□□ -0.98
CCDC88B-201ENST00000301897 C20orf78Q9BR46 151 aa8.9□□□□□ -0.98
CCDC88B-201ENST00000301897 KRTAP1-4P0C5Y4 121 aa8.89□□□□□ -0.99
CCDC88B-201ENST00000301897 RPL32P62910 135 aaKnown RBP8.89□□□□□ -0.99
CCDC88B-201ENST00000301897 UBE2BP63146 152 aa8.89□□□□□ -0.99
CCDC88B-201ENST00000301897 FAM19A5Q7Z5A7 132 aaPredicted RBP8.89□□□□□ -0.99
CCDC88B-201ENST00000301897 SMDT1Q9H4I9 107 aa8.89□□□□□ -0.99
CCDC88B-201ENST00000301897 SPANXA1Q9NS26 97 aa8.89□□□□□ -0.99
CCDC88B-201ENST00000301897 CARHSP1Q9Y2V2 147 aaKnown RBP8.89□□□□□ -0.99
CCDC88B-201ENST00000301897 FAM168BA1KXE4 195 aa8.88□□□□□ -0.99
CCDC88B-201ENST00000301897 LINC00862A6NCI5 91 aa8.88□□□□□ -0.99
CCDC88B-201ENST00000301897 ZNF727A8MUV8 499 aa8.88□□□□□ -0.99
CCDC88B-201ENST00000301897 C9JQL5 133 aa8.88□□□□□ -0.99
CCDC88B-201ENST00000301897 MRPS36P82909 103 aaKnown RBP8.88□□□□□ -0.99
CCDC88B-201ENST00000301897 V9GYV3 84 aa8.88□□□□□ -0.99
CCDC88B-201ENST00000301897 M0QXV9 152 aa8.87□□□□□ -0.99
CCDC88B-201ENST00000301897 HBBP68871 147 aa8.87□□□□□ -0.99
CCDC88B-201ENST00000301897 GAGE2EQ4V326 116 aa8.87□□□□□ -0.99
CCDC88B-201ENST00000301897 UNQ6190/PRO20217Q6UXQ8 127 aa8.87□□□□□ -0.99
CCDC88B-201ENST00000301897 GAGE2DQ9UEU5 116 aa8.87□□□□□ -0.99
CCDC88B-201ENST00000301897 TRBV24-1A0A075B6N3 115 aa8.86□□□□□ -0.99
CCDC88B-201ENST00000301897 TGIF2-C20orf24A0A0A6YYL0 155 aa8.86□□□□□ -0.99
CCDC88B-201ENST00000301897 TRBV30A0A0K0K1B3 111 aa8.86□□□□□ -0.99
CCDC88B-201ENST00000301897 SRSF3P84103 164 aaKnown RBP8.86□□□□□ -0.99
CCDC88B-201ENST00000301897 MRPL51Q4U2R6 128 aaKnown RBP8.86□□□□□ -0.99
CCDC88B-201ENST00000301897 C10orf25Q5T742 122 aa8.86□□□□□ -0.99
CCDC88B-201ENST00000301897 FAM104BQ5XKR9 115 aa8.86□□□□□ -0.99
CCDC88B-201ENST00000301897 KRTAP11-1Q8IUC1 163 aa8.86□□□□□ -0.99
CCDC88B-201ENST00000301897 FAM104AQ969W3 186 aa8.86□□□□□ -0.99
CCDC88B-201ENST00000301897 C6orf48Q9UBA6 75 aa8.86□□□□□ -0.99
CCDC88B-201ENST00000301897 NAT8BQ9UHF3 227 aa8.86□□□□□ -0.99
CCDC88B-201ENST00000301897 A0A1B0GW15 77 aa8.85□□□□□ -0.99
CCDC88B-201ENST00000301897 IFITM10A6NMD0 228 aa8.85□□□□□ -0.99
CCDC88B-201ENST00000301897 RPL39P62891 51 aaKnown RBP8.85□□□□□ -0.99
CCDC88B-201ENST00000301897 FAM74A3Q4VXF1 159 aa8.85□□□□□ -0.99
CCDC88B-201ENST00000301897 CKS2P33552 79 aa8.84□□□□□ -0.99
CCDC88B-201ENST00000301897 NDUFC2-KCTD14E9PQ53 114 aa8.83□□□□□ -1
CCDC88B-201ENST00000301897 RPL23P62829 140 aaKnown RBP8.83□□□□□ -1
CCDC88B-201ENST00000301897 PEA15Q15121 130 aa8.83□□□□□ -1
CCDC88B-201ENST00000301897 SMIM2Q9BVW6 85 aa8.83□□□□□ -1
CCDC88B-201ENST00000301897 PACRGQ96M98 296 aaPredicted RBP8.82□□□□□ -1
CCDC88B-201ENST00000301897 SMIM27A0A1W2PRY6 76 aa8.81□□□□□ -1
CCDC88B-201ENST00000301897 ZNF861PO60384 105 aa8.81□□□□□ -1
CCDC88B-201ENST00000301897 TNFRSF6BO95407 300 aa8.81□□□□□ -1
CCDC88B-201ENST00000301897 KIAA0087Q14695 138 aa8.81□□□□□ -1
CCDC88B-201ENST00000301897 KRTAP7-1Q8IUC3 87 aa8.81□□□□□ -1
CCDC88B-201ENST00000301897 KRTAP9-2Q9BYQ4 174 aa8.81□□□□□ -1
CCDC88B-201ENST00000301897 NAT8Q9UHE5 227 aa8.81□□□□□ -1
CCDC88B-201ENST00000301897 F8W036 122 aa8.8□□□□□ -1
CCDC88B-201ENST00000301897 NUPR1O60356 82 aa8.8□□□□□ -1
CCDC88B-201ENST00000301897 S100A8P05109 93 aa8.8□□□□□ -1
CCDC88B-201ENST00000301897 PPBPP02775 128 aa8.79□□□□□ -1
CCDC88B-201ENST00000301897 IFI27P40305 119 aaPredicted RBP8.79□□□□□ -1
CCDC88B-201ENST00000301897 LINC01561Q8N1V8 128 aa8.79□□□□□ -1
CCDC88B-201ENST00000301897 PYGO1Q9Y3Y4 419 aa8.79□□□□□ -1
CCDC88B-201ENST00000301897 RAB5AP20339 215 aa8.78□□□□□ -1
CCDC88B-201ENST00000301897 LBHQ53QV2 105 aaPredicted RBP8.78□□□□□ -1
CCDC88B-201ENST00000301897 C9orf129Q5T035 196 aaKnown RBP8.78□□□□□ -1
CCDC88B-201ENST00000301897 D6R8Y8 96 aa8.77□□□□□ -1.01
CCDC88B-201ENST00000301897 ADIRFQ15847 76 aa8.77□□□□□ -1.01
CCDC88B-201ENST00000301897 LINC00242Q5T6M2 205 aa8.77□□□□□ -1.01
CCDC88B-201ENST00000301897 TMEM141Q96I45 108 aa8.77□□□□□ -1.01
CCDC88B-201ENST00000301897 NPYP01303 97 aa8.76□□□□□ -1.01
CCDC88B-201ENST00000301897 PRSS2P07478 247 aa8.76□□□□□ -1.01
CCDC88B-201ENST00000301897 C2orf82Q6UX34 121 aa8.76□□□□□ -1.01
CCDC88B-201ENST00000301897 IGLV4-3A0A075B6K6 122 aa8.75□□□□□ -1.01
CCDC88B-201ENST00000301897 TSPAN13O95857 204 aa8.75□□□□□ -1.01
CCDC88B-201ENST00000301897 RPL28P46779 137 aaKnown RBP8.75□□□□□ -1.01
CCDC88B-201ENST00000301897 C2orf88Q9BSF0 95 aa8.75□□□□□ -1.01
CCDC88B-201ENST00000301897 CKS1BP61024 79 aa8.74□□□□□ -1.01
CCDC88B-201ENST00000301897 Q6ZN92 141 aa8.74□□□□□ -1.01
CCDC88B-201ENST00000301897 TEX43Q6ZNM6 134 aa8.74□□□□□ -1.01
CCDC88B-201ENST00000301897 TP73-AS1Q9UF72 201 aa8.74□□□□□ -1.01
CCDC88B-201ENST00000301897 C22orf24Q9Y442 160 aa8.74□□□□□ -1.01
CCDC88B-201ENST00000301897 A0A1B0GXF2 115 aa8.73□□□□□ -1.01
CCDC88B-201ENST00000301897 CRYGAP11844 174 aa8.73□□□□□ -1.01
CCDC88B-201ENST00000301897 C6orf226Q5I0X4 101 aa8.73□□□□□ -1.01
CCDC88B-201ENST00000301897 MRPL54Q6P161 138 aaKnown RBP8.73□□□□□ -1.01
CCDC88B-201ENST00000301897 ORMDL3Q8N138 153 aa8.73□□□□□ -1.01
CCDC88B-201ENST00000301897 IFITM2Q01629 132 aa8.72□□□□□ -1.01
CCDC88B-201ENST00000301897 CLLU1Q5K131 121 aa8.72□□□□□ -1.01
CCDC88B-201ENST00000301897 TYMSOSQ8TAI1 123 aa8.72□□□□□ -1.01
CCDC88B-201ENST00000301897 CTDSP1Q9GZU7 261 aa8.72□□□□□ -1.01
CCDC88B-201ENST00000301897 PRSS47A8MTI9 375 aa8.71□□□□□ -1.02
CCDC88B-201ENST00000301897 RAB14P61106 215 aa8.71□□□□□ -1.02
CCDC88B-201ENST00000301897 TMEM136Q6ZRR5 245 aa8.71□□□□□ -1.02
CCDC88B-201ENST00000301897 Q8IZM0 81 aa8.71□□□□□ -1.02
CCDC88B-201ENST00000301897 PRELID3AQ96N28 172 aa8.71□□□□□ -1.02
CCDC88B-201ENST00000301897 BCE1O60756 84 aa8.7□□□□□ -1.02
CCDC88B-201ENST00000301897 NPSP0C0P6 89 aa8.7□□□□□ -1.02
CCDC88B-201ENST00000301897 LCE2AQ5TA79 106 aaPredicted RBP8.7□□□□□ -1.02
CCDC88B-201ENST00000301897 MRPL55Q7Z7F7 128 aaKnown RBP8.7□□□□□ -1.02
CCDC88B-201ENST00000301897 LINC00469Q8N7U9 141 aa8.7□□□□□ -1.02
CCDC88B-201ENST00000301897 TOMM7Q9P0U1 55 aa8.7□□□□□ -1.02
CCDC88B-201ENST00000301897 LAMTOR2Q9Y2Q5 125 aa8.7□□□□□ -1.02
CCDC88B-201ENST00000301897 A0A087X002 238 aa8.69□□□□□ -1.02
CCDC88B-201ENST00000301897 ATP5L2Q7Z4Y8 100 aa8.69□□□□□ -1.02
CCDC88B-201ENST00000301897 ALKBH7Q9BT30 221 aaPredicted RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms