RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SMIM1B2RUZ4 78 aa9.68□□□□□ -0.86
SKA3-201ENST00000298260 SNRPD3P62318 126 aaKnown RBP9.68□□□□□ -0.86
SKA3-201ENST00000298260 WNK1Q9H4A3 2382 aa9.67□□□□□ -0.86
SKA3-201ENST00000298260 UPK3BQ9BT76 320 aa9.67□□□□□ -0.86
SKA3-201ENST00000298260 APCP25054 2843 aa9.67□□□□□ -0.86
SKA3-201ENST00000298260 USP17L23D6RBM5 183 aa9.67□□□□□ -0.86
SKA3-201ENST00000298260 INAFM2P0DMQ5 153 aa9.67□□□□□ -0.86
SKA3-201ENST00000298260 JMJD1CQ15652 2540 aa9.67□□□□□ -0.86
SKA3-201ENST00000298260 USMG5Q96IX5 58 aa9.67□□□□□ -0.86
SKA3-201ENST00000298260 HIST2H2BDQ6DRA6 164 aa9.66□□□□□ -0.86
SKA3-201ENST00000298260 ACANP16112 2415 aa9.66□□□□□ -0.86
SKA3-201ENST00000298260 NIPBLQ6KC79 2804 aaeCLIP9.66□□□□□ -0.86
SKA3-201ENST00000298260 IGKV3OR2-268A0A0C4DH90 116 aa9.66□□□□□ -0.86
SKA3-201ENST00000298260 FHL2Q14192 279 aa9.66□□□□□ -0.86
SKA3-201ENST00000298260 Q96MF0 132 aa9.66□□□□□ -0.86
SKA3-201ENST00000298260 TRAV25A0A0B4J276 109 aa9.65□□□□□ -0.86
SKA3-201ENST00000298260 MYO9AB2RTY4 2548 aa9.65□□□□□ -0.86
SKA3-201ENST00000298260 IGKV2-28A0A075B6P5 120 aa9.65□□□□□ -0.86
SKA3-201ENST00000298260 IGLV5-39A0A0G2JS06 123 aa9.65□□□□□ -0.86
SKA3-201ENST00000298260 IGKV2D-28P01615 120 aa9.65□□□□□ -0.86
SKA3-201ENST00000298260 Q5XG85 94 aa9.65□□□□□ -0.86
SKA3-201ENST00000298260 SERP2Q8N6R1 65 aa9.65□□□□□ -0.86
SKA3-201ENST00000298260 TOMM7Q9P0U1 55 aa9.65□□□□□ -0.86
SKA3-201ENST00000298260 K7EQG2 157 aa9.64□□□□□ -0.87
SKA3-201ENST00000298260 HIST2H2BCQ6DN03 193 aa9.64□□□□□ -0.87
SKA3-201ENST00000298260 SETD2Q9BYW2 2564 aaPredicted RBP9.64□□□□□ -0.87
SKA3-201ENST00000298260 LECT2O14960 151 aa9.64□□□□□ -0.87
SKA3-201ENST00000298260 RPS28P62857 69 aaKnown RBP9.64□□□□□ -0.87
SKA3-201ENST00000298260 SMIM11BQ8TCY0 68 aa9.64□□□□□ -0.87
SKA3-201ENST00000298260 TEX15Q9BXT5 2789 aa9.64□□□□□ -0.87
SKA3-201ENST00000298260 AKAP9Q99996 3911 aa9.64□□□□□ -0.87
SKA3-201ENST00000298260 IGHV3-53P01767 116 aa9.64□□□□□ -0.87
SKA3-201ENST00000298260 MIR7-3HGQ8N6C7 128 aa9.64□□□□□ -0.87
SKA3-201ENST00000298260 ZNF469Q96JG9 3925 aaPredicted RBP9.64□□□□□ -0.87
SKA3-201ENST00000298260 TRAV23DV6A0A075B6W5 121 aa9.63□□□□□ -0.87
SKA3-201ENST00000298260 IGLV5-45A0A087WSX0 123 aa9.63□□□□□ -0.87
SKA3-201ENST00000298260 F5H768 121 aa9.63□□□□□ -0.87
SKA3-201ENST00000298260 KMT2BQ9UMN6 2715 aaPredicted RBP9.62□□□□□ -0.87
SKA3-201ENST00000298260 RBMY1BA6NDE4 496 aaKnown RBP9.62□□□□□ -0.87
SKA3-201ENST00000298260 RBMY1EA6NEQ0 496 aaKnown RBP9.62□□□□□ -0.87
SKA3-201ENST00000298260 CRPP02741 224 aa9.62□□□□□ -0.87
SKA3-201ENST00000298260 RBMY1DP0C7P1 496 aaKnown RBP9.62□□□□□ -0.87
SKA3-201ENST00000298260 FBXL19-AS1Q494R0 122 aa9.62□□□□□ -0.87
SKA3-201ENST00000298260 DEFB131AP59861 70 aa9.62□□□□□ -0.87
SKA3-201ENST00000298260 TMEM258P61165 79 aa9.62□□□□□ -0.87
SKA3-201ENST00000298260 FAM222AQ5U5X8 452 aa9.62□□□□□ -0.87
SKA3-201ENST00000298260 FLNBO75369 2602 aaKnown RBP9.61□□□□□ -0.87
SKA3-201ENST00000298260 IGLV1-40P01703 118 aa9.61□□□□□ -0.87
SKA3-201ENST00000298260 RPL28P46779 137 aaKnown RBP9.61□□□□□ -0.87
SKA3-201ENST00000298260 FAM19A1Q7Z5A9 133 aa9.61□□□□□ -0.87
SKA3-201ENST00000298260 ZNF843Q8N446 348 aa9.61□□□□□ -0.87
SKA3-201ENST00000298260 SND1-IT1Q9HBX3 110 aa9.61□□□□□ -0.87
SKA3-201ENST00000298260 MXRA5Q9NR99 2828 aa9.6□□□□□ -0.87
SKA3-201ENST00000298260 PFN2P35080 140 aa9.6□□□□□ -0.87
SKA3-201ENST00000298260 C11orf68Q9H3H3 251 aaKnown RBP9.6□□□□□ -0.87
SKA3-201ENST00000298260 RPL36AP83881 106 aaKnown RBP9.59□□□□□ -0.87
SKA3-201ENST00000298260 RPL36ALQ969Q0 106 aaKnown RBP9.59□□□□□ -0.87
SKA3-201ENST00000298260 MTORP42345 2549 aa9.59□□□□□ -0.87
SKA3-201ENST00000298260 K7EMT4 169 aa9.59□□□□□ -0.87
SKA3-201ENST00000298260 DEFB136Q30KP8 78 aa9.59□□□□□ -0.87
SKA3-201ENST00000298260 NTM-AS1Q6ZSK4 140 aa9.59□□□□□ -0.87
SKA3-201ENST00000298260 LINC00158P58513 81 aa9.58□□□□□ -0.88
SKA3-201ENST00000298260 Q6JHZ5 121 aa9.58□□□□□ -0.88
SKA3-201ENST00000298260 C20orf197Q8N268 126 aa9.58□□□□□ -0.88
SKA3-201ENST00000298260 GHRHP01286 108 aa9.57□□□□□ -0.88
SKA3-201ENST00000298260 RNASE1P07998 156 aaKnown RBP9.57□□□□□ -0.88
SKA3-201ENST00000298260 A6NDX4 124 aa9.57□□□□□ -0.88
SKA3-201ENST00000298260 IGHV4-61A0A0C4DH41 118 aa9.56□□□□□ -0.88
SKA3-201ENST00000298260 ENHOQ6UWT2 76 aa9.56□□□□□ -0.88
SKA3-201ENST00000298260 FLNAP21333 2647 aaKnown RBP9.56□□□□□ -0.88
SKA3-201ENST00000298260 NF1P21359 2839 aa9.56□□□□□ -0.88
SKA3-201ENST00000298260 CCL18P55774 89 aa9.56□□□□□ -0.88
SKA3-201ENST00000298260 SS18Q15532 418 aa9.56□□□□□ -0.88
SKA3-201ENST00000298260 TRAV13-2A0A0B4J235 113 aa9.55□□□□□ -0.88
SKA3-201ENST00000298260 WIPF1O43516 503 aa9.55□□□□□ -0.88
SKA3-201ENST00000298260 C18orf65Q6ZTR6 163 aa9.55□□□□□ -0.88
SKA3-201ENST00000298260 ITPR3Q14573 2671 aa9.55□□□□□ -0.88
SKA3-201ENST00000298260 UNC79Q9P2D8 2635 aa9.55□□□□□ -0.88
SKA3-201ENST00000298260 AVPP01185 164 aa9.55□□□□□ -0.88
SKA3-201ENST00000298260 PRR3P79522 188 aaKnown RBP9.55□□□□□ -0.88
SKA3-201ENST00000298260 PAX4O43316 350 aa9.54□□□□□ -0.88
SKA3-201ENST00000298260 PSMB8P28062 276 aa9.54□□□□□ -0.88
SKA3-201ENST00000298260 C11orf72Q8NBR9 251 aa9.54□□□□□ -0.88
SKA3-201ENST00000298260 UBE2E2Q96LR5 201 aa9.54□□□□□ -0.88
SKA3-201ENST00000298260 XCL2Q9UBD3 114 aa9.54□□□□□ -0.88
SKA3-201ENST00000298260 H3BUA1 57 aa9.54□□□□□ -0.88
SKA3-201ENST00000298260 ZNF415Q09FC8 603 aa9.54□□□□□ -0.88
SKA3-201ENST00000298260 TRGV1A0A0A0MS02 117 aa9.53□□□□□ -0.88
SKA3-201ENST00000298260 IGHV4-59P01825 116 aa9.53□□□□□ -0.88
SKA3-201ENST00000298260 CDC42SE2Q9NRR3 84 aa9.53□□□□□ -0.88
SKA3-201ENST00000298260 Q6ZTI0 123 aa9.52□□□□□ -0.88
SKA3-201ENST00000298260 MAPK1IP1LQ8NDC0 245 aa9.52□□□□□ -0.88
SKA3-201ENST00000298260 COPS9Q8WXC6 57 aa9.52□□□□□ -0.88
SKA3-201ENST00000298260 TMEM243Q9BU79 118 aa9.52□□□□□ -0.88
SKA3-201ENST00000298260 FN1P02751 2386 aaKnown RBP9.52□□□□□ -0.89
SKA3-201ENST00000298260 SLURP1P55000 103 aa9.52□□□□□ -0.89
SKA3-201ENST00000298260 OBSCN-AS1Q96MR7 158 aa9.51□□□□□ -0.89
SKA3-201ENST00000298260 LOC100131303A0A0U1RQF7 123 aa9.51□□□□□ -0.89
SKA3-201ENST00000298260 LINC00336Q6ZUF6 198 aa9.51□□□□□ -0.89
SKA3-201ENST00000298260 KRTAP10-9P60411 292 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 107.9 ms