RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 Q8N3U1 123 aa8.77□□□□□ -1.01
SHROOM3-201ENST00000296043 IGF2RP11717 2491 aa8.77□□□□□ -1.01
SHROOM3-201ENST00000296043 DEFB135Q30KP9 77 aa8.76□□□□□ -1.01
SHROOM3-201ENST00000296043 IGLV2-11P01706 119 aa8.76□□□□□ -1.01
SHROOM3-201ENST00000296043 PCOTHQ58A44 107 aa8.76□□□□□ -1.01
SHROOM3-201ENST00000296043 USP9YO00507 2555 aaPredicted RBP8.76□□□□□ -1.01
SHROOM3-201ENST00000296043 LTBP1Q14766 1721 aa8.75□□□□□ -1.01
SHROOM3-201ENST00000296043 A0A0J9YX75 114 aa8.75□□□□□ -1.01
SHROOM3-201ENST00000296043 NTM-AS1Q6ZSK4 140 aa8.75□□□□□ -1.01
SHROOM3-201ENST00000296043 PROK1P58294 105 aa8.75□□□□□ -1.01
SHROOM3-201ENST00000296043 RNF138Q8WVD3 245 aa8.75□□□□□ -1.01
SHROOM3-201ENST00000296043 C5orf56Q8N8D9 126 aa8.75□□□□□ -1.01
SHROOM3-201ENST00000296043 Q6ZTI0 123 aa8.75□□□□□ -1.01
SHROOM3-201ENST00000296043 K7ENP7 123 aa8.74□□□□□ -1.01
SHROOM3-201ENST00000296043 TSPEAR-AS2P59090 65 aa8.73□□□□□ -1.01
SHROOM3-201ENST00000296043 RETNLBQ9BQ08 111 aa8.73□□□□□ -1.01
SHROOM3-201ENST00000296043 CCL18P55774 89 aa8.73□□□□□ -1.01
SHROOM3-201ENST00000296043 SPAG11AQ6PDA7 123 aa8.73□□□□□ -1.01
SHROOM3-201ENST00000296043 Q8N814 137 aa8.72□□□□□ -1.01
SHROOM3-201ENST00000296043 CCDC140Q96MF4 163 aa8.72□□□□□ -1.01
SHROOM3-201ENST00000296043 Q96MF0 132 aa8.72□□□□□ -1.01
SHROOM3-201ENST00000296043 UBE2D1P51668 147 aa8.71□□□□□ -1.01
SHROOM3-201ENST00000296043 ODF3Q96PU9 254 aa8.71□□□□□ -1.01
SHROOM3-201ENST00000296043 COL4A3Q01955 1670 aa8.71□□□□□ -1.02
SHROOM3-201ENST00000296043 DHRS4-AS1Q9P1J3 65 aa8.71□□□□□ -1.02
SHROOM3-201ENST00000296043 EDN2P20800 178 aa8.7□□□□□ -1.02
SHROOM3-201ENST00000296043 MDFIQ99750 246 aa8.7□□□□□ -1.02
SHROOM3-201ENST00000296043 LIMD2Q9BT23 127 aa8.7□□□□□ -1.02
SHROOM3-201ENST00000296043 PLAC8L1A1L4L8 177 aa8.7□□□□□ -1.02
SHROOM3-201ENST00000296043 RPL37AP8A6NKH3 93 aa8.7□□□□□ -1.02
SHROOM3-201ENST00000296043 H0Y9P7 68 aa8.7□□□□□ -1.02
SHROOM3-201ENST00000296043 BRWD1-AS2P59051 145 aa8.69□□□□□ -1.02
SHROOM3-201ENST00000296043 Q6ZPA2 131 aa8.69□□□□□ -1.02
SHROOM3-201ENST00000296043 ADAMTSL4-AS1Q5T5F5 129 aa8.69□□□□□ -1.02
SHROOM3-201ENST00000296043 LINC00846Q9NV44 126 aa8.69□□□□□ -1.02
SHROOM3-201ENST00000296043 RPS28P62857 69 aaKnown RBP8.69□□□□□ -1.02
SHROOM3-201ENST00000296043 SPINK1P00995 79 aa8.68□□□□□ -1.02
SHROOM3-201ENST00000296043 CXCL6P80162 114 aa8.68□□□□□ -1.02
SHROOM3-201ENST00000296043 Q6ZVQ6 151 aa8.68□□□□□ -1.02
SHROOM3-201ENST00000296043 FAM215AQ9Y5M1 114 aa8.68□□□□□ -1.02
SHROOM3-201ENST00000296043 ANKRD11Q6UB99 2663 aaPredicted RBP8.68□□□□□ -1.02
SHROOM3-201ENST00000296043 GPHB5Q86YW7 130 aa8.68□□□□□ -1.02
SHROOM3-201ENST00000296043 ANKRD17O75179 2603 aaKnown RBP8.68□□□□□ -1.02
SHROOM3-201ENST00000296043 PRR9Q5T870 116 aa8.68□□□□□ -1.02
SHROOM3-201ENST00000296043 TNFRSF13BO14836 293 aaPredicted RBP8.67□□□□□ -1.02
SHROOM3-201ENST00000296043 CR1P17927 2039 aa8.67□□□□□ -1.02
SHROOM3-201ENST00000296043 PRR3P79522 188 aaKnown RBP8.67□□□□□ -1.02
SHROOM3-201ENST00000296043 LINC01547P58512 204 aaPredicted RBP8.67□□□□□ -1.02
SHROOM3-201ENST00000296043 K7EMT4 169 aa8.67□□□□□ -1.02
SHROOM3-201ENST00000296043 PRRC2CQ9Y520 2896 aaKnown RBP8.67□□□□□ -1.02
SHROOM3-201ENST00000296043 LOC100131303A0A0U1RQF7 123 aa8.67□□□□□ -1.02
SHROOM3-201ENST00000296043 Q6ZSR3 168 aa8.67□□□□□ -1.02
SHROOM3-201ENST00000296043 URB1-AS1Q96HZ7 61 aa8.67□□□□□ -1.02
SHROOM3-201ENST00000296043 IGLV9-49A0A0B4J1Y8 123 aa8.66□□□□□ -1.02
SHROOM3-201ENST00000296043 IGLV4-69A0A075B6H9 119 aa8.66□□□□□ -1.02
SHROOM3-201ENST00000296043 RNASE3P12724 160 aaKnown RBP8.66□□□□□ -1.02
SHROOM3-201ENST00000296043 GRNP28799 593 aaKnown RBP8.65□□□□□ -1.02
SHROOM3-201ENST00000296043 LINC01561Q8N1V8 128 aa8.65□□□□□ -1.02
SHROOM3-201ENST00000296043 MAP6D1Q9H9H5 199 aa8.65□□□□□ -1.02
SHROOM3-201ENST00000296043 X6R8D5 127 aa8.65□□□□□ -1.02
SHROOM3-201ENST00000296043 RPL28P46779 137 aaKnown RBP8.65□□□□□ -1.03
SHROOM3-201ENST00000296043 OXLD1Q5BKU9 147 aa8.64□□□□□ -1.03
SHROOM3-201ENST00000296043 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.64□□□□□ -1.03
SHROOM3-201ENST00000296043 SMAD5-AS1Q9Y6J3 95 aa8.64□□□□□ -1.03
SHROOM3-201ENST00000296043 PRO0255Q9UI72 69 aa8.64□□□□□ -1.03
SHROOM3-201ENST00000296043 M0R378 163 aa8.64□□□□□ -1.03
SHROOM3-201ENST00000296043 C9orf116Q5BN46 136 aaPredicted RBP8.64□□□□□ -1.03
SHROOM3-201ENST00000296043 LINC01548A6NM66 108 aa8.64□□□□□ -1.03
SHROOM3-201ENST00000296043 DEFB116Q30KQ4 102 aa8.63□□□□□ -1.03
SHROOM3-201ENST00000296043 C1orf229Q6ZS94 237 aaPredicted RBP8.63□□□□□ -1.03
SHROOM3-201ENST00000296043 IL17DQ8TAD2 202 aa8.63□□□□□ -1.03
SHROOM3-201ENST00000296043 C11orf21Q9P2W6 132 aa8.63□□□□□ -1.03
SHROOM3-201ENST00000296043 CHD8Q9HCK8 2581 aa8.63□□□□□ -1.03
SHROOM3-201ENST00000296043 C4orf3Q8WVX3 66 aa8.63□□□□□ -1.03
SHROOM3-201ENST00000296043 FAM19A4Q96LR4 140 aa8.63□□□□□ -1.03
SHROOM3-201ENST00000296043 UBE2D4Q9Y2X8 147 aa8.63□□□□□ -1.03
SHROOM3-201ENST00000296043 C10orf25Q5T742 122 aa8.62□□□□□ -1.03
SHROOM3-201ENST00000296043 IGHV6-1A0A0B4J1U7 121 aa8.62□□□□□ -1.03
SHROOM3-201ENST00000296043 C1orf137Q5JT78 98 aa8.62□□□□□ -1.03
SHROOM3-201ENST00000296043 TRBV6-8A0A0A6YYG3 113 aa8.62□□□□□ -1.03
SHROOM3-201ENST00000296043 ZFP36P26651 326 aaKnown RBP8.62□□□□□ -1.03
SHROOM3-201ENST00000296043 ZNF706Q9Y5V0 76 aaPredicted RBP8.62□□□□□ -1.03
SHROOM3-201ENST00000296043 SPINT4Q6UDR6 99 aa8.62□□□□□ -1.03
SHROOM3-201ENST00000296043 EIF4EBP1Q13541 118 aaPredicted RBP8.62□□□□□ -1.03
SHROOM3-201ENST00000296043 PRM2P04554 102 aa8.62□□□□□ -1.03
SHROOM3-201ENST00000296043 Q8N7P7 452 aa8.62□□□□□ -1.03
SHROOM3-201ENST00000296043 LY6G6EA0A0G2JKS1 128 aa8.61□□□□□ -1.03
SHROOM3-201ENST00000296043 TRBV10-3A0A0K0K1G6 114 aa8.61□□□□□ -1.03
SHROOM3-201ENST00000296043 TRBV6-4A0A1B0GX49 114 aa8.61□□□□□ -1.03
SHROOM3-201ENST00000296043 U3KQA8 63 aa8.61□□□□□ -1.03
SHROOM3-201ENST00000296043 C9orf66Q5T8R8 295 aa8.61□□□□□ -1.03
SHROOM3-201ENST00000296043 IGIPA6NJ69 53 aa8.61□□□□□ -1.03
SHROOM3-201ENST00000296043 ZNF580Q9UK33 172 aa8.61□□□□□ -1.03
SHROOM3-201ENST00000296043 HCG22E2RYF7 251 aa8.6□□□□□ -1.03
SHROOM3-201ENST00000296043 C8orf87E5RJ46 101 aa8.6□□□□□ -1.03
SHROOM3-201ENST00000296043 TMEM89A2RUT3 159 aa8.6□□□□□ -1.03
SHROOM3-201ENST00000296043 SYCNQ0VAF6 134 aa8.6□□□□□ -1.03
SHROOM3-201ENST00000296043 C1orf64Q8NEQ6 169 aa8.6□□□□□ -1.03
SHROOM3-201ENST00000296043 C14orf177Q52M58 125 aa8.6□□□□□ -1.03
SHROOM3-201ENST00000296043 SBSPONQ8IVN8 264 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms