RNA–Protein interactions for RNA: ENST00000291386.3

SSU72-201, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSU72, Length 1,290 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-201ENST00000291386 LINC00242Q5T6M2 205 aa17.45■□□□□ 0.38
SSU72-201ENST00000291386 C9orf163Q8N9P6 203 aa17.45■□□□□ 0.38
SSU72-201ENST00000291386 SLPIP03973 132 aa17.43■□□□□ 0.38
SSU72-201ENST00000291386 MALP21145 153 aa17.43■□□□□ 0.38
SSU72-201ENST00000291386 HIGD2BQ4VC39 106 aa17.43■□□□□ 0.38
SSU72-201ENST00000291386 ZC2HC1BQ5TFG8 222 aa17.43■□□□□ 0.38
SSU72-201ENST00000291386 CHCHD1Q96BP2 118 aaKnown RBP17.43■□□□□ 0.38
SSU72-201ENST00000291386 HBDP02042 147 aa17.42■□□□□ 0.38
SSU72-201ENST00000291386 C5orf38Q86SI9 138 aa17.42■□□□□ 0.38
SSU72-201ENST00000291386 HERC2O95714 4834 aa17.41■□□□□ 0.38
SSU72-201ENST00000291386 TRAV16A0A0A6YYK6 109 aaPredicted RBP17.4■□□□□ 0.38
SSU72-201ENST00000291386 APOMO95445 188 aa17.4■□□□□ 0.38
SSU72-201ENST00000291386 LINC01620Q4KN68 170 aa17.4■□□□□ 0.38
SSU72-201ENST00000291386 Q6ZSA8 131 aa17.4■□□□□ 0.38
SSU72-201ENST00000291386 COX6A2Q02221 97 aa17.39■□□□□ 0.37
SSU72-201ENST00000291386 PDZD11Q5EBL8 140 aa17.39■□□□□ 0.37
SSU72-201ENST00000291386 A0A087WZ39 114 aa17.38■□□□□ 0.37
SSU72-201ENST00000291386 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP17.38■□□□□ 0.37
SSU72-201ENST00000291386 S100A1P23297 94 aa17.38■□□□□ 0.37
SSU72-201ENST00000291386 XGP55808 180 aa17.38■□□□□ 0.37
SSU72-201ENST00000291386 SEC11AP67812 179 aa17.38■□□□□ 0.37
SSU72-201ENST00000291386 PMCHL1Q16048 86 aa17.37■□□□□ 0.37
SSU72-201ENST00000291386 LINC01561Q8N1V8 128 aa17.37■□□□□ 0.37
SSU72-201ENST00000291386 ZNF561-AS1K7EIQ3 104 aa17.36■□□□□ 0.37
SSU72-201ENST00000291386 BAGE3Q86Y29 109 aa17.36■□□□□ 0.37
SSU72-201ENST00000291386 OR10D4PQ8NGN7 298 aa17.36■□□□□ 0.37
SSU72-201ENST00000291386 FAM30AQ9NZY2 134 aa17.36■□□□□ 0.37
SSU72-201ENST00000291386 HSPG2P98160 4391 aa17.35■□□□□ 0.37
SSU72-201ENST00000291386 IGHV3-64A0A075B6Q5 118 aa17.35■□□□□ 0.37
SSU72-201ENST00000291386 PMVKQ15126 192 aa17.35■□□□□ 0.37
SSU72-201ENST00000291386 HERVK_113P63121 156 aa17.34■□□□□ 0.37
SSU72-201ENST00000291386 SDIM1Q6ZPB5 146 aa17.34■□□□□ 0.37
SSU72-201ENST00000291386 CST9LQ9H4G1 147 aa17.34■□□□□ 0.37
SSU72-201ENST00000291386 ATP5LO75964 103 aa17.33■□□□□ 0.36
SSU72-201ENST00000291386 C2orf48Q96LS8 159 aa17.32■□□□□ 0.36
SSU72-201ENST00000291386 IGLV4-69A0A075B6H9 119 aa17.31■□□□□ 0.36
SSU72-201ENST00000291386 ATP6V1G1O75348 118 aa17.31■□□□□ 0.36
SSU72-201ENST00000291386 LINC00526Q96FQ7 95 aa17.31■□□□□ 0.36
SSU72-201ENST00000291386 A0A0J9YXV3 536 aa17.3■□□□□ 0.36
SSU72-201ENST00000291386 TINCRA0A1B0GVN0 87 aa17.3■□□□□ 0.36
SSU72-201ENST00000291386 HSBP1O75506 76 aa17.3■□□□□ 0.36
SSU72-201ENST00000291386 ORAOV1Q8WV07 137 aa17.3■□□□□ 0.36
SSU72-201ENST00000291386 F8WDY8 70 aa17.29■□□□□ 0.36
SSU72-201ENST00000291386 LINC00310P59036 64 aa17.29■□□□□ 0.36
SSU72-201ENST00000291386 SPAG11BQ08648 103 aa17.29■□□□□ 0.36
SSU72-201ENST00000291386 SYCNQ0VAF6 134 aa17.29■□□□□ 0.36
SSU72-201ENST00000291386 GEMIN7Q9H840 131 aaKnown RBP17.29■□□□□ 0.36
SSU72-201ENST00000291386 CARD19Q96LW7 228 aa17.28■□□□□ 0.36
SSU72-201ENST00000291386 SERF1AO75920 110 aa17.27■□□□□ 0.36
SSU72-201ENST00000291386 IGLV5-45A0A087WSX0 123 aa17.26■□□□□ 0.35
SSU72-201ENST00000291386 CAMK2N2Q96S95 79 aa17.26■□□□□ 0.35
SSU72-201ENST00000291386 CDKN2A-AS1Q9UH64 79 aa17.26■□□□□ 0.35
SSU72-201ENST00000291386 CIRBPQ14011 172 aaKnown RBP17.24■□□□□ 0.35
SSU72-201ENST00000291386 KIAA0087Q14695 138 aa17.24■□□□□ 0.35
SSU72-201ENST00000291386 FAM19A2Q8N3H0 131 aa17.24■□□□□ 0.35
SSU72-201ENST00000291386 CHAC1Q9BUX1 264 aa17.24■□□□□ 0.35
SSU72-201ENST00000291386 HIST1H2BKO60814 126 aa17.23■□□□□ 0.35
SSU72-201ENST00000291386 HIST1H2BJP06899 126 aa17.23■□□□□ 0.35
SSU72-201ENST00000291386 IGLC3P0DOY3 106 aa17.23■□□□□ 0.35
SSU72-201ENST00000291386 HIST1H2BOP23527 126 aa17.23■□□□□ 0.35
SSU72-201ENST00000291386 HIST1H2BBP33778 126 aa17.23■□□□□ 0.35
SSU72-201ENST00000291386 HIST1H2BDP58876 126 aa17.23■□□□□ 0.35
SSU72-201ENST00000291386 HIST1H2BCP62807 126 aa17.23■□□□□ 0.35
SSU72-201ENST00000291386 HIST2H2BEQ16778 126 aa17.23■□□□□ 0.35
SSU72-201ENST00000291386 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.23■□□□□ 0.35
SSU72-201ENST00000291386 Q6ZRU5 148 aa17.23■□□□□ 0.35
SSU72-201ENST00000291386 HIST1H2BHQ93079 126 aa17.23■□□□□ 0.35
SSU72-201ENST00000291386 HIST1H2BNQ99877 126 aa17.23■□□□□ 0.35
SSU72-201ENST00000291386 HIST1H2BMQ99879 126 aa17.23■□□□□ 0.35
SSU72-201ENST00000291386 PKIGQ9Y2B9 76 aa17.23■□□□□ 0.35
SSU72-201ENST00000291386 NDUFA6P56556 154 aa17.22■□□□□ 0.35
SSU72-201ENST00000291386 RNF151Q2KHN1 245 aa17.22■□□□□ 0.35
SSU72-201ENST00000291386 IFI27L1Q96BM0 104 aa17.22■□□□□ 0.35
SSU72-201ENST00000291386 NUPR1O60356 82 aa17.21■□□□□ 0.35
SSU72-201ENST00000291386 Q8N1X5 172 aa17.21■□□□□ 0.35
SSU72-201ENST00000291386 LINC00469Q8N7U9 141 aa17.21■□□□□ 0.35
SSU72-201ENST00000291386 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP17.21■□□□□ 0.35
SSU72-201ENST00000291386 HAMPP81172 84 aa17.2■□□□□ 0.34
SSU72-201ENST00000291386 SCXQ7RTU7 201 aa17.2■□□□□ 0.34
SSU72-201ENST00000291386 KRTAP17-1Q9BYP8 105 aa17.2■□□□□ 0.34
SSU72-201ENST00000291386 MRPL35Q9NZE8 188 aaKnown RBP17.2■□□□□ 0.34
SSU72-201ENST00000291386 TRAV12-1A0A0B4J245 112 aa17.19■□□□□ 0.34
SSU72-201ENST00000291386 NDUFA1O15239 70 aa17.19■□□□□ 0.34
SSU72-201ENST00000291386 PACRGQ96M98 296 aaPredicted RBP17.19■□□□□ 0.34
SSU72-201ENST00000291386 PANO1I0J062 215 aa17.18■□□□□ 0.34
SSU72-201ENST00000291386 Q8IZM0 81 aa17.18■□□□□ 0.34
SSU72-201ENST00000291386 CIRBP-AS1Q8TBR5 109 aa17.18■□□□□ 0.34
SSU72-201ENST00000291386 SMIM1B2RUZ4 78 aa17.16■□□□□ 0.34
SSU72-201ENST00000291386 LEPROTL1O95214 131 aa17.16■□□□□ 0.34
SSU72-201ENST00000291386 SPACA4Q8TDM5 124 aa17.16■□□□□ 0.34
SSU72-201ENST00000291386 H3BRM9 83 aa17.14■□□□□ 0.33
SSU72-201ENST00000291386 PRSS2P07478 247 aa17.14■□□□□ 0.33
SSU72-201ENST00000291386 UNQ6190/PRO20217Q6UXQ8 127 aa17.14■□□□□ 0.33
SSU72-201ENST00000291386 CHTOPQ9Y3Y2 248 aaKnown RBP17.14■□□□□ 0.33
SSU72-201ENST00000291386 LOC107984640A0A0U1RRK4 108 aa17.13■□□□□ 0.33
SSU72-201ENST00000291386 CHTF8P0CG12 524 aa17.13■□□□□ 0.33
SSU72-201ENST00000291386 ZNF22P17026 224 aaPredicted RBP17.13■□□□□ 0.33
SSU72-201ENST00000291386 C10orf25Q5T742 122 aa17.13■□□□□ 0.33
SSU72-201ENST00000291386 A0A096LNI7 61 aa17.12■□□□□ 0.33
SSU72-201ENST00000291386 TOMM7Q9P0U1 55 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms