RNA–Protein interactions for RNA: ENST00000285199.11

USP43-201, Transcript of ubiquitin specific peptidase 43, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene USP43, Length 4,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-201ENST00000285199 C9orf85Q96MD7 179 aa11.49□□□□□ -0.57
USP43-201ENST00000285199 CHD6Q8TD26 2715 aa11.49□□□□□ -0.57
USP43-201ENST00000285199 ZNF561-AS1K7EIQ3 104 aa11.49□□□□□ -0.57
USP43-201ENST00000285199 SHISA2Q6UWI4 295 aa11.49□□□□□ -0.57
USP43-201ENST00000285199 SPANXCQ9NY87 97 aa11.48□□□□□ -0.57
USP43-201ENST00000285199 NDUFA1O15239 70 aa11.48□□□□□ -0.57
USP43-201ENST00000285199 ENHOQ6UWT2 76 aa11.48□□□□□ -0.57
USP43-201ENST00000285199 LOC107984640A0A0U1RRK4 108 aa11.48□□□□□ -0.57
USP43-201ENST00000285199 PSMB8P28062 276 aa11.48□□□□□ -0.57
USP43-201ENST00000285199 FHL3Q13643 280 aa11.48□□□□□ -0.57
USP43-201ENST00000285199 Q6ZSN1 163 aa11.48□□□□□ -0.57
USP43-201ENST00000285199 MRPS36P82909 103 aaKnown RBP11.47□□□□□ -0.57
USP43-201ENST00000285199 RNF152Q8N8N0 203 aa11.47□□□□□ -0.57
USP43-201ENST00000285199 M0QXV9 152 aa11.46□□□□□ -0.57
USP43-201ENST00000285199 PYGO1Q9Y3Y4 419 aa11.45□□□□□ -0.58
USP43-201ENST00000285199 RPL18AQ02543 176 aaKnown RBP11.45□□□□□ -0.58
USP43-201ENST00000285199 LINC00242Q5T6M2 205 aa11.45□□□□□ -0.58
USP43-201ENST00000285199 CITED2Q99967 270 aaPredicted RBP11.44□□□□□ -0.58
USP43-201ENST00000285199 PRR3P79522 188 aaKnown RBP11.44□□□□□ -0.58
USP43-201ENST00000285199 LINC00269Q8N2A0 174 aa11.44□□□□□ -0.58
USP43-201ENST00000285199 SMIM11BQ8TCY0 68 aa11.44□□□□□ -0.58
USP43-201ENST00000285199 ODF3Q96PU9 254 aa11.44□□□□□ -0.58
USP43-201ENST00000285199 SPANXDQ9BXN6 97 aa11.44□□□□□ -0.58
USP43-201ENST00000285199 KIF25-AS1Q9Y6Z4 181 aa11.44□□□□□ -0.58
USP43-201ENST00000285199 LINC00315P59091 139 aa11.42□□□□□ -0.58
USP43-201ENST00000285199 USP17L23D6RBM5 183 aa11.42□□□□□ -0.58
USP43-201ENST00000285199 PPDPFQ9H3Y8 114 aa11.42□□□□□ -0.58
USP43-201ENST00000285199 CMC4P56277 68 aaPredicted RBP11.41□□□□□ -0.58
USP43-201ENST00000285199 DEFB114Q30KQ6 69 aa11.41□□□□□ -0.58
USP43-201ENST00000285199 KLK12Q9UKR0 248 aa11.41□□□□□ -0.58
USP43-201ENST00000285199 Q8N2B8 174 aa11.41□□□□□ -0.58
USP43-201ENST00000285199 CXCL5P42830 114 aa11.41□□□□□ -0.58
USP43-201ENST00000285199 XAGE1AQ9HD64 81 aa11.41□□□□□ -0.58
USP43-201ENST00000285199 C6orf99Q4VX62 202 aa11.4□□□□□ -0.58
USP43-201ENST00000285199 UPK3BQ9BT76 320 aa11.4□□□□□ -0.58
USP43-201ENST00000285199 DEFB135Q30KP9 77 aa11.4□□□□□ -0.58
USP43-201ENST00000285199 SNURFQ9Y675 71 aa11.39□□□□□ -0.59
USP43-201ENST00000285199 COL4A2P08572 1712 aa11.39□□□□□ -0.59
USP43-201ENST00000285199 FLNBO75369 2602 aaKnown RBP11.39□□□□□ -0.59
USP43-201ENST00000285199 LRBAP50851 2863 aa11.39□□□□□ -0.59
USP43-201ENST00000285199 PLA2G2AP14555 144 aa11.38□□□□□ -0.59
USP43-201ENST00000285199 TRBV10-1A0A0K0K1A3 114 aa11.38□□□□□ -0.59
USP43-201ENST00000285199 J3QLI3 93 aa11.38□□□□□ -0.59
USP43-201ENST00000285199 C16orf74Q96GX8 76 aa11.38□□□□□ -0.59
USP43-201ENST00000285199 CHCHD7Q9BUK0 85 aa11.38□□□□□ -0.59
USP43-201ENST00000285199 IGLV1-40P01703 118 aa11.38□□□□□ -0.59
USP43-201ENST00000285199 CCL18P55774 89 aa11.38□□□□□ -0.59
USP43-201ENST00000285199 SMIM1B2RUZ4 78 aa11.38□□□□□ -0.59
USP43-201ENST00000285199 COX7CP15954 63 aa11.38□□□□□ -0.59
USP43-201ENST00000285199 ASH1LQ9NR48 2969 aaKnown RBP11.37□□□□□ -0.59
USP43-201ENST00000285199 JMJD7-PLA2G4BH0Y9G9 81 aa11.37□□□□□ -0.59
USP43-201ENST00000285199 ZNF292O60281 2723 aa11.37□□□□□ -0.59
USP43-201ENST00000285199 A0A087WYN8 130 aa11.37□□□□□ -0.59
USP43-201ENST00000285199 SPAG11BQ08648 103 aa11.37□□□□□ -0.59
USP43-201ENST00000285199 ASPMQ8IZT6 3477 aa11.36□□□□□ -0.59
USP43-201ENST00000285199 LINC01546A6NGU7 62 aa11.35□□□□□ -0.59
USP43-201ENST00000285199 TMEM256-PLSCR3K7ERE1 68 aa11.35□□□□□ -0.59
USP43-201ENST00000285199 NKAPP1Q8N9T2 125 aa11.35□□□□□ -0.59
USP43-201ENST00000285199 HIGD2BQ4VC39 106 aa11.35□□□□□ -0.59
USP43-201ENST00000285199 MPLKIPQ8TAP9 179 aa11.35□□□□□ -0.59
USP43-201ENST00000285199 AMELXQ99217 191 aa11.35□□□□□ -0.59
USP43-201ENST00000285199 ATRQ13535 2644 aa11.34□□□□□ -0.59
USP43-201ENST00000285199 EIF4EBP3O60516 100 aaPredicted RBP11.34□□□□□ -0.59
USP43-201ENST00000285199 Q6Q795 121 aa11.34□□□□□ -0.59
USP43-201ENST00000285199 TMEM89A2RUT3 159 aa11.34□□□□□ -0.59
USP43-201ENST00000285199 C9orf116Q5BN46 136 aaPredicted RBP11.34□□□□□ -0.59
USP43-201ENST00000285199 HRCT1Q6UXD1 115 aa11.34□□□□□ -0.59
USP43-201ENST00000285199 CAMK2N2Q96S95 79 aa11.34□□□□□ -0.59
USP43-201ENST00000285199 CDC42SE2Q9NRR3 84 aa11.34□□□□□ -0.59
USP43-201ENST00000285199 PKIGQ9Y2B9 76 aa11.34□□□□□ -0.59
USP43-201ENST00000285199 IGKV2D-24A0A075B6R9 120 aa11.33□□□□□ -0.6
USP43-201ENST00000285199 A0A0U1RQV1 116 aa11.33□□□□□ -0.6
USP43-201ENST00000285199 SERP2Q8N6R1 65 aa11.32□□□□□ -0.6
USP43-201ENST00000285199 IGLV4-60A0A075B6I1 120 aa11.32□□□□□ -0.6
USP43-201ENST00000285199 TIMM17BO60830 172 aa11.32□□□□□ -0.6
USP43-201ENST00000285199 BRK1Q8WUW1 75 aa11.32□□□□□ -0.6
USP43-201ENST00000285199 TRBV6-8A0A0A6YYG3 113 aa11.32□□□□□ -0.6
USP43-201ENST00000285199 IMUPQ9GZP8 106 aa11.31□□□□□ -0.6
USP43-201ENST00000285199 A8MTW9 85 aa11.31□□□□□ -0.6
USP43-201ENST00000285199 NREPQ16612 68 aa11.31□□□□□ -0.6
USP43-201ENST00000285199 FAM19A5Q7Z5A7 132 aaPredicted RBP11.3□□□□□ -0.6
USP43-201ENST00000285199 LINC00482Q8N8I6 264 aa11.3□□□□□ -0.6
USP43-201ENST00000285199 C4orf3Q8WVX3 66 aa11.3□□□□□ -0.6
USP43-201ENST00000285199 IBA57-AS1B1ANH7 110 aa11.3□□□□□ -0.6
USP43-201ENST00000285199 HILS1P60008 231 aa11.3□□□□□ -0.6
USP43-201ENST00000285199 Q6ZQY7 126 aa11.3□□□□□ -0.6
USP43-201ENST00000285199 LINC00846Q9NV44 126 aa11.3□□□□□ -0.6
USP43-201ENST00000285199 FAM240AA0A1B0GVK7 77 aa11.29□□□□□ -0.6
USP43-201ENST00000285199 CHCHD10Q8WYQ3 142 aaPredicted RBP11.29□□□□□ -0.6
USP43-201ENST00000285199 LRRC75A-AS1Q8N1F1 130 aa11.29□□□□□ -0.6
USP43-201ENST00000285199 LINC00337Q8N6G1 96 aa11.29□□□□□ -0.6
USP43-201ENST00000285199 COL12A1Q99715 3063 aa11.28□□□□□ -0.6
USP43-201ENST00000285199 FAM222AQ5U5X8 452 aa11.28□□□□□ -0.6
USP43-201ENST00000285199 HECTD1Q9ULT8 2610 aa11.28□□□□□ -0.6
USP43-201ENST00000285199 ODF3L2Q3SX64 289 aa11.28□□□□□ -0.6
USP43-201ENST00000285199 FAM19A1Q7Z5A9 133 aa11.28□□□□□ -0.6
USP43-201ENST00000285199 BBC3Q96PG8 261 aaPredicted RBP11.28□□□□□ -0.6
USP43-201ENST00000285199 ZNF702PQ9H963 129 aa11.28□□□□□ -0.6
USP43-201ENST00000285199 PRO0255Q9UI72 69 aa11.28□□□□□ -0.6
USP43-201ENST00000285199 REG3AQ06141 175 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms