RNA–Protein interactions for RNA: ENST00000274938.7

SCUBE3-201, Transcript of signal peptide, CUB domain and EGF like domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCUBE3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3-201ENST00000274938 LIMD2Q9BT23 127 aa6.33□□□□□ -1.4
SCUBE3-201ENST00000274938 CRIP2P52943 208 aaPredicted RBP6.33□□□□□ -1.4
SCUBE3-201ENST00000274938 PLXND1Q9Y4D7 1925 aa6.33□□□□□ -1.4
SCUBE3-201ENST00000274938 RIF1Q5UIP0 2472 aaKnown RBP6.32□□□□□ -1.4
SCUBE3-201ENST00000274938 LOC100131303A0A0U1RQF7 123 aa6.32□□□□□ -1.4
SCUBE3-201ENST00000274938 PSPHP1O15172 72 aa6.32□□□□□ -1.4
SCUBE3-201ENST00000274938 IGLV1-40P01703 118 aa6.32□□□□□ -1.4
SCUBE3-201ENST00000274938 BCE1O60756 84 aa6.32□□□□□ -1.4
SCUBE3-201ENST00000274938 GAS8-AS1O95177 125 aa6.32□□□□□ -1.4
SCUBE3-201ENST00000274938 ZNF702PQ9H963 129 aa6.32□□□□□ -1.4
SCUBE3-201ENST00000274938 LINC00482Q8N8I6 264 aa6.32□□□□□ -1.4
SCUBE3-201ENST00000274938 H0Y9P7 68 aa6.32□□□□□ -1.4
SCUBE3-201ENST00000274938 REG3GQ6UW15 175 aa6.32□□□□□ -1.4
SCUBE3-201ENST00000274938 LINC01547P58512 204 aaPredicted RBP6.32□□□□□ -1.4
SCUBE3-201ENST00000274938 EP400Q96L91 3159 aa6.31□□□□□ -1.4
SCUBE3-201ENST00000274938 AMELXQ99217 191 aa6.31□□□□□ -1.4
SCUBE3-201ENST00000274938 A0A1W2PNU3 283 aaPredicted RBP6.31□□□□□ -1.4
SCUBE3-201ENST00000274938 LINC01561Q8N1V8 128 aa6.31□□□□□ -1.4
SCUBE3-201ENST00000274938 CXCL6P80162 114 aa6.31□□□□□ -1.4
SCUBE3-201ENST00000274938 C11orf71Q6IPW1 123 aa6.3□□□□□ -1.4
SCUBE3-201ENST00000274938 COX8CQ7Z4L0 72 aa6.3□□□□□ -1.4
SCUBE3-201ENST00000274938 ZNF843Q8N446 348 aa6.3□□□□□ -1.4
SCUBE3-201ENST00000274938 SPTAN1Q13813 2472 aaKnown RBP6.3□□□□□ -1.4
SCUBE3-201ENST00000274938 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.3□□□□□ -1.4
SCUBE3-201ENST00000274938 UNQ6190/PRO20217Q6UXQ8 127 aa6.3□□□□□ -1.4
SCUBE3-201ENST00000274938 NUP210Q8TEM1 1887 aaPredicted RBP6.3□□□□□ -1.4
SCUBE3-201ENST00000274938 TSPEAR-AS2P59090 65 aa6.3□□□□□ -1.4
SCUBE3-201ENST00000274938 HCG22E2RYF7 251 aa6.3□□□□□ -1.4
SCUBE3-201ENST00000274938 BEAN1Q3B7T3 259 aa6.3□□□□□ -1.4
SCUBE3-201ENST00000274938 COL4A3Q01955 1670 aa6.29□□□□□ -1.4
SCUBE3-201ENST00000274938 LINC00575Q6W349 94 aa6.29□□□□□ -1.4
SCUBE3-201ENST00000274938 IGHV6-1A0A0B4J1U7 121 aa6.29□□□□□ -1.4
SCUBE3-201ENST00000274938 PLCE1Q9P212 2302 aa6.29□□□□□ -1.4
SCUBE3-201ENST00000274938 PCDH15Q96QU1 1955 aa6.29□□□□□ -1.4
SCUBE3-201ENST00000274938 PRR14LQ5THK1 2151 aa6.29□□□□□ -1.4
SCUBE3-201ENST00000274938 PCOTHQ58A44 107 aa6.28□□□□□ -1.4
SCUBE3-201ENST00000274938 CRYGAP11844 174 aa6.28□□□□□ -1.4
SCUBE3-201ENST00000274938 RPS28P62857 69 aaKnown RBP6.28□□□□□ -1.4
SCUBE3-201ENST00000274938 ADAMTSL4-AS1Q5T5F5 129 aa6.28□□□□□ -1.4
SCUBE3-201ENST00000274938 SHANK1Q9Y566 2161 aa6.28□□□□□ -1.4
SCUBE3-201ENST00000274938 WISP2O76076 250 aa6.27□□□□□ -1.41
SCUBE3-201ENST00000274938 C10orf99Q6UWK7 81 aa6.27□□□□□ -1.41
SCUBE3-201ENST00000274938 C2orf48Q96LS8 159 aa6.27□□□□□ -1.41
SCUBE3-201ENST00000274938 LINC00846Q9NV44 126 aa6.27□□□□□ -1.41
SCUBE3-201ENST00000274938 NOTCH4Q99466 2003 aa6.27□□□□□ -1.41
SCUBE3-201ENST00000274938 Q9BRP9 147 aa6.27□□□□□ -1.41
SCUBE3-201ENST00000274938 C19orf84I3L1E1 186 aa6.26□□□□□ -1.41
SCUBE3-201ENST00000274938 GOLGB1Q14789 3259 aaKnown RBP6.26□□□□□ -1.41
SCUBE3-201ENST00000274938 SERTAD4-AS1Q5TG53 156 aa6.26□□□□□ -1.41
SCUBE3-201ENST00000274938 CDIP1Q9H305 208 aa6.26□□□□□ -1.41
SCUBE3-201ENST00000274938 COX6A2Q02221 97 aa6.26□□□□□ -1.41
SCUBE3-201ENST00000274938 OBSL1O75147 1896 aa6.26□□□□□ -1.41
SCUBE3-201ENST00000274938 MED13Q9UHV7 2174 aa6.25□□□□□ -1.41
SCUBE3-201ENST00000274938 A0A087WSZ3 146 aa6.25□□□□□ -1.41
SCUBE3-201ENST00000274938 ARHGAP32A7KAX9 2087 aa6.25□□□□□ -1.41
SCUBE3-201ENST00000274938 LINC01006Q8NI28 216 aa6.25□□□□□ -1.41
SCUBE3-201ENST00000274938 NOTCH3Q9UM47 2321 aa6.25□□□□□ -1.41
SCUBE3-201ENST00000274938 IGLV2-18A0A075B6J9 118 aa6.24□□□□□ -1.41
SCUBE3-201ENST00000274938 A0A096LNJ9 63 aa6.24□□□□□ -1.41
SCUBE3-201ENST00000274938 BRI3O95415 125 aa6.24□□□□□ -1.41
SCUBE3-201ENST00000274938 A0A1B0GW54 56 aa6.24□□□□□ -1.41
SCUBE3-201ENST00000274938 C6orf223Q8N319 242 aa6.24□□□□□ -1.41
SCUBE3-201ENST00000274938 C1orf64Q8NEQ6 169 aa6.24□□□□□ -1.41
SCUBE3-201ENST00000274938 PCNX1Q96RV3 2341 aa6.24□□□□□ -1.41
SCUBE3-201ENST00000274938 A0A1B0GUV1 79 aa6.24□□□□□ -1.41
SCUBE3-201ENST00000274938 C9orf116Q5BN46 136 aaPredicted RBP6.23□□□□□ -1.41
SCUBE3-201ENST00000274938 VPREB1P12018 145 aa6.23□□□□□ -1.41
SCUBE3-201ENST00000274938 IGLV4-60A0A075B6I1 120 aa6.23□□□□□ -1.41
SCUBE3-201ENST00000274938 ODF3L2Q3SX64 289 aa6.23□□□□□ -1.41
SCUBE3-201ENST00000274938 TP53AIP1Q9HCN2 124 aa6.23□□□□□ -1.41
SCUBE3-201ENST00000274938 CIRBP-AS1Q8TBR5 109 aa6.22□□□□□ -1.41
SCUBE3-201ENST00000274938 H3BPC8 53 aa6.22□□□□□ -1.41
SCUBE3-201ENST00000274938 ZNF580Q9UK33 172 aa6.22□□□□□ -1.41
SCUBE3-201ENST00000274938 CACNA1HO95180 2353 aa6.22□□□□□ -1.41
SCUBE3-201ENST00000274938 INAFM1C9JVW0 142 aa6.22□□□□□ -1.41
SCUBE3-201ENST00000274938 FREM1Q5H8C1 2179 aa6.22□□□□□ -1.41
SCUBE3-201ENST00000274938 FHL2Q14192 279 aa6.22□□□□□ -1.41
SCUBE3-201ENST00000274938 Q8N2B8 174 aa6.22□□□□□ -1.41
SCUBE3-201ENST00000274938 KIF26AQ9ULI4 1882 aaPredicted RBP6.22□□□□□ -1.41
SCUBE3-201ENST00000274938 PRR3P79522 188 aaKnown RBP6.22□□□□□ -1.41
SCUBE3-201ENST00000274938 C4orf26Q17RF5 130 aa6.22□□□□□ -1.41
SCUBE3-201ENST00000274938 X6R8D5 127 aa6.21□□□□□ -1.41
SCUBE3-201ENST00000274938 SPINK1P00995 79 aa6.21□□□□□ -1.42
SCUBE3-201ENST00000274938 SRCAPQ6ZRS2 3230 aa6.21□□□□□ -1.42
SCUBE3-201ENST00000274938 HCFC1P51610 2035 aa6.21□□□□□ -1.42
SCUBE3-201ENST00000274938 GPR179Q6PRD1 2367 aa6.21□□□□□ -1.42
SCUBE3-201ENST00000274938 A0A1B0GU69 56 aa6.21□□□□□ -1.42
SCUBE3-201ENST00000274938 SPAG11AQ6PDA7 123 aa6.2□□□□□ -1.42
SCUBE3-201ENST00000274938 RETNLBQ9BQ08 111 aa6.2□□□□□ -1.42
SCUBE3-201ENST00000274938 NBASA2RRP1 2371 aa6.2□□□□□ -1.42
SCUBE3-201ENST00000274938 PRM2P04554 102 aa6.2□□□□□ -1.42
SCUBE3-201ENST00000274938 LINC01546A6NGU7 62 aa6.2□□□□□ -1.42
SCUBE3-201ENST00000274938 C18orf65Q6ZTR6 163 aa6.2□□□□□ -1.42
SCUBE3-201ENST00000274938 DENND4CQ5VZ89 1909 aa6.2□□□□□ -1.42
SCUBE3-201ENST00000274938 NUPR2A6NF83 97 aa6.2□□□□□ -1.42
SCUBE3-201ENST00000274938 M0R2N4 97 aa6.2□□□□□ -1.42
SCUBE3-201ENST00000274938 ACYP2P14621 99 aa6.19□□□□□ -1.42
SCUBE3-201ENST00000274938 PLXNB3Q9ULL4 1909 aa6.19□□□□□ -1.42
SCUBE3-201ENST00000274938 LINC00337Q8N6G1 96 aa6.19□□□□□ -1.42
SCUBE3-201ENST00000274938 Q9UF83 564 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms