RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 CEP295Q9C0D2 2601 aa8.4□□□□□ -1.06
USP53-201ENST00000274030 USP17L23D6RBM5 183 aa8.4□□□□□ -1.06
USP53-201ENST00000274030 MRPS12O15235 138 aaKnown RBP8.4□□□□□ -1.06
USP53-201ENST00000274030 CD164L2Q6UWJ8 174 aa8.4□□□□□ -1.06
USP53-201ENST00000274030 C9orf85Q96MD7 179 aa8.4□□□□□ -1.06
USP53-201ENST00000274030 UBE2D4Q9Y2X8 147 aa8.4□□□□□ -1.06
USP53-201ENST00000274030 NANOS2P60321 138 aaKnown RBP8.4□□□□□ -1.07
USP53-201ENST00000274030 NDUFC2O95298 119 aa8.39□□□□□ -1.07
USP53-201ENST00000274030 IGLV1-40P01703 118 aa8.39□□□□□ -1.07
USP53-201ENST00000274030 SPTSSBQ8NFR3 76 aa8.39□□□□□ -1.07
USP53-201ENST00000274030 NDUFA7O95182 113 aa8.39□□□□□ -1.07
USP53-201ENST00000274030 PYGO1Q9Y3Y4 419 aa8.39□□□□□ -1.07
USP53-201ENST00000274030 TRBV30A0A0K0K1B3 111 aa8.39□□□□□ -1.07
USP53-201ENST00000274030 EP400Q96L91 3159 aa8.39□□□□□ -1.07
USP53-201ENST00000274030 POLR2KP53803 58 aaKnown RBP8.38□□□□□ -1.07
USP53-201ENST00000274030 CEP192Q8TEP8 1941 aa8.37□□□□□ -1.07
USP53-201ENST00000274030 LY6G6CO95867 125 aa8.37□□□□□ -1.07
USP53-201ENST00000274030 C2orf91Q6ZV80 131 aa8.37□□□□□ -1.07
USP53-201ENST00000274030 WFDC13Q8IUB5 93 aa8.37□□□□□ -1.07
USP53-201ENST00000274030 POM121L12Q8N7R1 296 aa8.37□□□□□ -1.07
USP53-201ENST00000274030 USP9YO00507 2555 aaPredicted RBP8.37□□□□□ -1.07
USP53-201ENST00000274030 LELP1Q5T871 98 aa8.36□□□□□ -1.07
USP53-201ENST00000274030 C3orf22Q8N5N4 141 aa8.36□□□□□ -1.07
USP53-201ENST00000274030 SMIM11BQ8TCY0 68 aa8.36□□□□□ -1.07
USP53-201ENST00000274030 CHD8Q9HCK8 2581 aa8.36□□□□□ -1.07
USP53-201ENST00000274030 ZNF462Q96JM2 2506 aa8.36□□□□□ -1.07
USP53-201ENST00000274030 IGHV4-30-4P0DP06 118 aa8.36□□□□□ -1.07
USP53-201ENST00000274030 RETNQ9HD89 108 aa8.36□□□□□ -1.07
USP53-201ENST00000274030 UBE2D1P51668 147 aa8.35□□□□□ -1.07
USP53-201ENST00000274030 PRR4Q16378 134 aa8.35□□□□□ -1.07
USP53-201ENST00000274030 KIR2DL5BQ8NHK3 375 aa8.35□□□□□ -1.07
USP53-201ENST00000274030 PKD1L2Q7Z442 2459 aa8.35□□□□□ -1.07
USP53-201ENST00000274030 C7orf33Q8WU49 177 aa8.35□□□□□ -1.07
USP53-201ENST00000274030 CRIP2P52943 208 aaPredicted RBP8.35□□□□□ -1.07
USP53-201ENST00000274030 IGLV9-49A0A0B4J1Y8 123 aa8.34□□□□□ -1.07
USP53-201ENST00000274030 ANKRD11Q6UB99 2663 aaPredicted RBP8.34□□□□□ -1.07
USP53-201ENST00000274030 IGLV4-69A0A075B6H9 119 aa8.34□□□□□ -1.07
USP53-201ENST00000274030 ODF3L2Q3SX64 289 aa8.34□□□□□ -1.07
USP53-201ENST00000274030 SNURFQ9Y675 71 aa8.34□□□□□ -1.07
USP53-201ENST00000274030 LRRK2Q5S007 2527 aa8.34□□□□□ -1.07
USP53-201ENST00000274030 M0R378 163 aa8.33□□□□□ -1.08
USP53-201ENST00000274030 UQCRQO14949 82 aa8.33□□□□□ -1.08
USP53-201ENST00000274030 MRGPRG-AS1Q2M3A8 158 aa8.33□□□□□ -1.08
USP53-201ENST00000274030 COL4A4P53420 1690 aaPredicted RBP8.33□□□□□ -1.08
USP53-201ENST00000274030 CYSRT1A8MQ03 144 aa8.33□□□□□ -1.08
USP53-201ENST00000274030 C9orf116Q5BN46 136 aaPredicted RBP8.33□□□□□ -1.08
USP53-201ENST00000274030 CDC42SE2Q9NRR3 84 aa8.33□□□□□ -1.08
USP53-201ENST00000274030 UBE2D3P61077 147 aa8.33□□□□□ -1.08
USP53-201ENST00000274030 UBE2D2P62837 147 aa8.33□□□□□ -1.08
USP53-201ENST00000274030 FAM236DA0A1B0GTK5 79 aa8.32□□□□□ -1.08
USP53-201ENST00000274030 FAM236CP0DP71 79 aa8.32□□□□□ -1.08
USP53-201ENST00000274030 A0A1W2PPR1 153 aa8.32□□□□□ -1.08
USP53-201ENST00000274030 BRI3O95415 125 aa8.32□□□□□ -1.08
USP53-201ENST00000274030 UNQ6190/PRO20217Q6UXQ8 127 aa8.32□□□□□ -1.08
USP53-201ENST00000274030 PLA2G2AP14555 144 aa8.31□□□□□ -1.08
USP53-201ENST00000274030 LST1O00453 97 aa8.31□□□□□ -1.08
USP53-201ENST00000274030 TIMM17BO60830 172 aa8.31□□□□□ -1.08
USP53-201ENST00000274030 MUC4Q99102 2169 aa8.31□□□□□ -1.08
USP53-201ENST00000274030 ZNF73O43830 326 aaPredicted RBP8.31□□□□□ -1.08
USP53-201ENST00000274030 MRPS36P82909 103 aaKnown RBP8.31□□□□□ -1.08
USP53-201ENST00000274030 LINC00242Q5T6M2 205 aa8.3□□□□□ -1.08
USP53-201ENST00000274030 PRR3P79522 188 aaKnown RBP8.3□□□□□ -1.08
USP53-201ENST00000274030 IGIPA6NJ69 53 aa8.3□□□□□ -1.08
USP53-201ENST00000274030 ATP5EP2Q5VTU8 51 aa8.3□□□□□ -1.08
USP53-201ENST00000274030 SPTBN4Q9H254 2564 aa8.29□□□□□ -1.08
USP53-201ENST00000274030 LOC107984640A0A0U1RRK4 108 aa8.29□□□□□ -1.08
USP53-201ENST00000274030 PLAC8L1A1L4L8 177 aa8.29□□□□□ -1.08
USP53-201ENST00000274030 DHRS4-AS1Q9P1J3 65 aa8.29□□□□□ -1.08
USP53-201ENST00000274030 LINC00310P59036 64 aa8.28□□□□□ -1.08
USP53-201ENST00000274030 EXPH5Q8NEV8 1989 aa8.28□□□□□ -1.08
USP53-201ENST00000274030 IGLV4-60A0A075B6I1 120 aa8.28□□□□□ -1.08
USP53-201ENST00000274030 A0A0U1RQV1 116 aa8.28□□□□□ -1.08
USP53-201ENST00000274030 LINC00694P0DN24 101 aa8.28□□□□□ -1.08
USP53-201ENST00000274030 URB1-AS1Q96HZ7 61 aa8.28□□□□□ -1.08
USP53-201ENST00000274030 COX6A2Q02221 97 aa8.28□□□□□ -1.08
USP53-201ENST00000274030 CNFNQ9BYD5 112 aa8.27□□□□□ -1.08
USP53-201ENST00000274030 Q8IZM0 81 aa8.27□□□□□ -1.09
USP53-201ENST00000274030 ZNF580Q9UK33 172 aa8.27□□□□□ -1.09
USP53-201ENST00000274030 FAM19A3Q7Z5A8 133 aa8.26□□□□□ -1.09
USP53-201ENST00000274030 FAM30AQ9NZY2 134 aa8.26□□□□□ -1.09
USP53-201ENST00000274030 CELA1Q9UNI1 258 aa8.26□□□□□ -1.09
USP53-201ENST00000274030 Q6ZTC4 211 aa8.25□□□□□ -1.09
USP53-201ENST00000274030 MTORP42345 2549 aa8.25□□□□□ -1.09
USP53-201ENST00000274030 XGP55808 180 aa8.25□□□□□ -1.09
USP53-201ENST00000274030 SMIM1B2RUZ4 78 aa8.25□□□□□ -1.09
USP53-201ENST00000274030 C6orf223Q8N319 242 aa8.25□□□□□ -1.09
USP53-201ENST00000274030 ATG2AQ2TAZ0 1938 aa8.25□□□□□ -1.09
USP53-201ENST00000274030 EML5Q05BV3 1969 aa8.25□□□□□ -1.09
USP53-201ENST00000274030 COX17Q14061 63 aa8.24□□□□□ -1.09
USP53-201ENST00000274030 MUC22E2RYF6 1773 aaPredicted RBP8.24□□□□□ -1.09
USP53-201ENST00000274030 IGLV1-51P01701 117 aa8.24□□□□□ -1.09
USP53-201ENST00000274030 TSPEAR-AS2P59090 65 aa8.24□□□□□ -1.09
USP53-201ENST00000274030 TRBV10-3A0A0K0K1G6 114 aa8.24□□□□□ -1.09
USP53-201ENST00000274030 CHCHD7Q9BUK0 85 aa8.24□□□□□ -1.09
USP53-201ENST00000274030 M0QXV9 152 aa8.24□□□□□ -1.09
USP53-201ENST00000274030 C10orf142B7Z368 130 aa8.23□□□□□ -1.09
USP53-201ENST00000274030 SERP2Q8N6R1 65 aa8.23□□□□□ -1.09
USP53-201ENST00000274030 RAI1Q7Z5J4 1906 aaPredicted RBP8.23□□□□□ -1.09
USP53-201ENST00000274030 ZNF706Q9Y5V0 76 aaPredicted RBP8.23□□□□□ -1.09
USP53-201ENST00000274030 CCDC179H3BU77 68 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms