RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 MIR7-3HGQ8N6C7 128 aa8.85□□□□□ -0.99
CHMP3-201ENST00000263856 OR13C6PQ8NH95 151 aa8.85□□□□□ -0.99
CHMP3-201ENST00000263856 Q96MF0 132 aa8.85□□□□□ -0.99
CHMP3-201ENST00000263856 SETXQ7Z333 2677 aaKnown RBP8.85□□□□□ -0.99
CHMP3-201ENST00000263856 CR1P17927 2039 aa8.85□□□□□ -0.99
CHMP3-201ENST00000263856 TIMM17BO60830 172 aa8.85□□□□□ -0.99
CHMP3-201ENST00000263856 C4orf3Q8WVX3 66 aa8.85□□□□□ -0.99
CHMP3-201ENST00000263856 FAM218AQ96MZ4 157 aa8.85□□□□□ -0.99
CHMP3-201ENST00000263856 NBEAL2Q6ZNJ1 2754 aa8.84□□□□□ -0.99
CHMP3-201ENST00000263856 TRGV4A0A0C4DH28 118 aa8.84□□□□□ -0.99
CHMP3-201ENST00000263856 CRPP02741 224 aa8.84□□□□□ -0.99
CHMP3-201ENST00000263856 C5orf38Q86SI9 138 aa8.84□□□□□ -0.99
CHMP3-201ENST00000263856 TMEM243Q9BU79 118 aa8.84□□□□□ -0.99
CHMP3-201ENST00000263856 FLNAP21333 2647 aaKnown RBP8.84□□□□□ -0.99
CHMP3-201ENST00000263856 BEAN1Q3B7T3 259 aa8.83□□□□□ -1
CHMP3-201ENST00000263856 ATP5G1P05496 136 aa8.83□□□□□ -1
CHMP3-201ENST00000263856 CLPSL2Q6UWE3 100 aa8.83□□□□□ -1
CHMP3-201ENST00000263856 CDC42SE2Q9NRR3 84 aa8.83□□□□□ -1
CHMP3-201ENST00000263856 IGLV5-39A0A0G2JS06 123 aa8.83□□□□□ -1
CHMP3-201ENST00000263856 DNAL4O96015 105 aa8.83□□□□□ -1
CHMP3-201ENST00000263856 IGLV5-45A0A087WSX0 123 aa8.82□□□□□ -1
CHMP3-201ENST00000263856 A0A096LNT2 108 aa8.82□□□□□ -1
CHMP3-201ENST00000263856 ITPR3Q14573 2671 aa8.82□□□□□ -1
CHMP3-201ENST00000263856 A0A096LPF7 62 aa8.81□□□□□ -1
CHMP3-201ENST00000263856 SND1-IT1Q9HBX3 110 aa8.81□□□□□ -1
CHMP3-201ENST00000263856 GCN1Q92616 2671 aaKnown RBP8.81□□□□□ -1
CHMP3-201ENST00000263856 RNF152Q8N8N0 203 aa8.81□□□□□ -1
CHMP3-201ENST00000263856 SMCR5Q8TEV8 140 aa8.81□□□□□ -1
CHMP3-201ENST00000263856 COPS9Q8WXC6 57 aa8.81□□□□□ -1
CHMP3-201ENST00000263856 CCL24O00175 119 aa8.81□□□□□ -1
CHMP3-201ENST00000263856 PAX4O43316 350 aa8.81□□□□□ -1
CHMP3-201ENST00000263856 DEFB130BP0DP73 79 aa8.81□□□□□ -1
CHMP3-201ENST00000263856 DEFB130AP0DP74 79 aa8.81□□□□□ -1
CHMP3-201ENST00000263856 Q6Q795 121 aa8.8□□□□□ -1
CHMP3-201ENST00000263856 COX7B2Q8TF08 81 aa8.8□□□□□ -1
CHMP3-201ENST00000263856 IGLV4-60A0A075B6I1 120 aa8.79□□□□□ -1
CHMP3-201ENST00000263856 A8MTW9 85 aa8.79□□□□□ -1
CHMP3-201ENST00000263856 LINC00337Q8N6G1 96 aa8.79□□□□□ -1
CHMP3-201ENST00000263856 F5H768 121 aa8.79□□□□□ -1
CHMP3-201ENST00000263856 SLPIP03973 132 aa8.79□□□□□ -1
CHMP3-201ENST00000263856 C14orf132Q9NPU4 83 aa8.78□□□□□ -1
CHMP3-201ENST00000263856 NBPF19A0A087WUL8 3843 aa8.78□□□□□ -1
CHMP3-201ENST00000263856 A0A087WYN8 130 aa8.78□□□□□ -1
CHMP3-201ENST00000263856 SHISA2Q6UWI4 295 aa8.78□□□□□ -1
CHMP3-201ENST00000263856 RNASE1P07998 156 aaKnown RBP8.77□□□□□ -1
CHMP3-201ENST00000263856 HIST2H2BCQ6DN03 193 aa8.77□□□□□ -1
CHMP3-201ENST00000263856 TRBV10-1A0A0K0K1A3 114 aa8.77□□□□□ -1.01
CHMP3-201ENST00000263856 FAM240AA0A1B0GVK7 77 aa8.77□□□□□ -1.01
CHMP3-201ENST00000263856 HERV-K104P63124 156 aa8.77□□□□□ -1.01
CHMP3-201ENST00000263856 XCL1P47992 114 aa8.77□□□□□ -1.01
CHMP3-201ENST00000263856 TRAV13-2A0A0B4J235 113 aa8.76□□□□□ -1.01
CHMP3-201ENST00000263856 IGKV3D-7A0A0C4DH55 119 aa8.76□□□□□ -1.01
CHMP3-201ENST00000263856 LECT2O14960 151 aa8.76□□□□□ -1.01
CHMP3-201ENST00000263856 SMIM11BQ8TCY0 68 aa8.76□□□□□ -1.01
CHMP3-201ENST00000263856 DNAJC9-AS1A6NH13 148 aa8.76□□□□□ -1.01
CHMP3-201ENST00000263856 MALP21145 153 aa8.76□□□□□ -1.01
CHMP3-201ENST00000263856 C9orf129Q5T035 196 aaKnown RBP8.75□□□□□ -1.01
CHMP3-201ENST00000263856 FSHBP01225 129 aa8.75□□□□□ -1.01
CHMP3-201ENST00000263856 C6orf226Q5I0X4 101 aa8.75□□□□□ -1.01
CHMP3-201ENST00000263856 C9orf153Q5TBE3 101 aa8.75□□□□□ -1.01
CHMP3-201ENST00000263856 SDIM1Q6ZPB5 146 aa8.75□□□□□ -1.01
CHMP3-201ENST00000263856 APCP25054 2843 aa8.75□□□□□ -1.01
CHMP3-201ENST00000263856 TRACP01848 142 aa8.75□□□□□ -1.01
CHMP3-201ENST00000263856 DEFB113Q30KQ7 82 aa8.75□□□□□ -1.01
CHMP3-201ENST00000263856 IGKV2-28A0A075B6P5 120 aa8.74□□□□□ -1.01
CHMP3-201ENST00000263856 IGKV2D-28P01615 120 aa8.74□□□□□ -1.01
CHMP3-201ENST00000263856 CCL18P55774 89 aa8.74□□□□□ -1.01
CHMP3-201ENST00000263856 MRPL23Q16540 153 aaKnown RBP8.74□□□□□ -1.01
CHMP3-201ENST00000263856 DEFB121Q5J5C9 76 aa8.74□□□□□ -1.01
CHMP3-201ENST00000263856 LINC01600Q96MT4 127 aa8.74□□□□□ -1.01
CHMP3-201ENST00000263856 HIVEP2P31629 2446 aa8.74□□□□□ -1.01
CHMP3-201ENST00000263856 USP24Q9UPU5 2620 aa8.74□□□□□ -1.01
CHMP3-201ENST00000263856 NCR3O14931 201 aa8.73□□□□□ -1.01
CHMP3-201ENST00000263856 ACYP1P07311 99 aa8.73□□□□□ -1.01
CHMP3-201ENST00000263856 LINC00643Q86TS7 51 aa8.73□□□□□ -1.01
CHMP3-201ENST00000263856 CSDC2Q9Y534 153 aaKnown RBP8.73□□□□□ -1.01
CHMP3-201ENST00000263856 TRBV7-7A0A0K0K1E9 115 aa8.73□□□□□ -1.01
CHMP3-201ENST00000263856 WFDC11Q8NEX6 87 aa8.73□□□□□ -1.01
CHMP3-201ENST00000263856 ESM1Q9NQ30 184 aa8.73□□□□□ -1.01
CHMP3-201ENST00000263856 INAFM2P0DMQ5 153 aa8.72□□□□□ -1.01
CHMP3-201ENST00000263856 PRR3P79522 188 aaKnown RBP8.72□□□□□ -1.01
CHMP3-201ENST00000263856 C16orf74Q96GX8 76 aa8.72□□□□□ -1.01
CHMP3-201ENST00000263856 IGLV10-54A0A075B6I4 117 aa8.71□□□□□ -1.01
CHMP3-201ENST00000263856 KLK5Q9Y337 293 aaPredicted RBP8.71□□□□□ -1.01
CHMP3-201ENST00000263856 TRBV6-8A0A0A6YYG3 113 aa8.71□□□□□ -1.02
CHMP3-201ENST00000263856 IL17DQ8TAD2 202 aa8.71□□□□□ -1.02
CHMP3-201ENST00000263856 GIG44P09565 113 aaPredicted RBP8.7□□□□□ -1.02
CHMP3-201ENST00000263856 RPL28P46779 137 aaKnown RBP8.7□□□□□ -1.02
CHMP3-201ENST00000263856 BBC3Q96PG8 261 aaPredicted RBP8.7□□□□□ -1.02
CHMP3-201ENST00000263856 C22orf24Q9Y442 160 aa8.7□□□□□ -1.02
CHMP3-201ENST00000263856 NOTCH2Q04721 2471 aa8.7□□□□□ -1.02
CHMP3-201ENST00000263856 DEFB4AO15263 64 aa8.7□□□□□ -1.02
CHMP3-201ENST00000263856 A0A087WVE0 104 aa8.69□□□□□ -1.02
CHMP3-201ENST00000263856 GYPEP15421 78 aa8.69□□□□□ -1.02
CHMP3-201ENST00000263856 TRAV25A0A0B4J276 109 aa8.69□□□□□ -1.02
CHMP3-201ENST00000263856 PLAC8L1A1L4L8 177 aa8.68□□□□□ -1.02
CHMP3-201ENST00000263856 HIST1H4AP62805 103 aaKnown RBP8.68□□□□□ -1.02
CHMP3-201ENST00000263856 IGHV3OR16-9A0A0B4J2B5 98 aa8.67□□□□□ -1.02
CHMP3-201ENST00000263856 TRBV6-4A0A1B0GX49 114 aa8.67□□□□□ -1.02
CHMP3-201ENST00000263856 FHL2Q14192 279 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms