RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 PMVKQ15126 192 aa11.5□□□□□ -0.57
SDCBP-201ENST00000260130 Q9UF83 564 aa11.5□□□□□ -0.57
SDCBP-201ENST00000260130 NBDYA0A0U1RRE5 68 aa11.49□□□□□ -0.57
SDCBP-201ENST00000260130 GAGE12JA6NER3 117 aa11.48□□□□□ -0.57
SDCBP-201ENST00000260130 IGIPA6NJ69 53 aa11.48□□□□□ -0.57
SDCBP-201ENST00000260130 F5H697 171 aa11.48□□□□□ -0.57
SDCBP-201ENST00000260130 GAGE4Q13068 117 aa11.48□□□□□ -0.57
SDCBP-201ENST00000260130 GAGE5Q13069 117 aa11.48□□□□□ -0.57
SDCBP-201ENST00000260130 GAGE13Q4V321 117 aa11.48□□□□□ -0.57
SDCBP-201ENST00000260130 TIMM17AQ99595 171 aa11.48□□□□□ -0.57
SDCBP-201ENST00000260130 H3BMG7 143 aa11.48□□□□□ -0.57
SDCBP-201ENST00000260130 ZNF56Q15929 161 aa11.48□□□□□ -0.57
SDCBP-201ENST00000260130 ATP6V0E2Q8NHE4 81 aa11.48□□□□□ -0.57
SDCBP-201ENST00000260130 IGLV4-69A0A075B6H9 119 aa11.47□□□□□ -0.57
SDCBP-201ENST00000260130 TSHBP01222 138 aa11.47□□□□□ -0.57
SDCBP-201ENST00000260130 TIRAPP58753 221 aa11.47□□□□□ -0.57
SDCBP-201ENST00000260130 SRSF9Q13242 221 aaKnown RBP eCLIP11.47□□□□□ -0.57
SDCBP-201ENST00000260130 SPANXB1Q9NS25 103 aaPredicted RBP11.47□□□□□ -0.57
SDCBP-201ENST00000260130 TRBV10-1A0A0K0K1A3 114 aa11.47□□□□□ -0.57
SDCBP-201ENST00000260130 TRBV6-5A0A0K0K1A5 114 aa11.47□□□□□ -0.57
SDCBP-201ENST00000260130 C11orf86A6NJI1 115 aa11.47□□□□□ -0.57
SDCBP-201ENST00000260130 LINC00694P0DN24 101 aa11.47□□□□□ -0.57
SDCBP-201ENST00000260130 WFDC2Q14508 124 aa11.47□□□□□ -0.57
SDCBP-201ENST00000260130 TRBV27A0A0K0K1C4 114 aa11.46□□□□□ -0.57
SDCBP-201ENST00000260130 SDHAF1A6NFY7 115 aa11.46□□□□□ -0.57
SDCBP-201ENST00000260130 GTSF1LQ9H1H1 148 aa11.46□□□□□ -0.57
SDCBP-201ENST00000260130 PGPEP1Q9NXJ5 209 aa11.45□□□□□ -0.58
SDCBP-201ENST00000260130 PLEKHB2Q96CS7 222 aa11.45□□□□□ -0.58
SDCBP-201ENST00000260130 FRAS1Q86XX4 4008 aa11.45□□□□□ -0.58
SDCBP-201ENST00000260130 UBE2D1P51668 147 aa11.44□□□□□ -0.58
SDCBP-201ENST00000260130 TTC32Q5I0X7 151 aa11.44□□□□□ -0.58
SDCBP-201ENST00000260130 RPL39P62891 51 aaKnown RBP11.44□□□□□ -0.58
SDCBP-201ENST00000260130 RPL36AP83881 106 aaKnown RBP11.44□□□□□ -0.58
SDCBP-201ENST00000260130 RPL36ALQ969Q0 106 aaKnown RBP11.44□□□□□ -0.58
SDCBP-201ENST00000260130 WFDC10BQ8IUB3 73 aa11.43□□□□□ -0.58
SDCBP-201ENST00000260130 C1orf134Q5TEV5 83 aa11.43□□□□□ -0.58
SDCBP-201ENST00000260130 LYRM7Q5U5X0 104 aa11.43□□□□□ -0.58
SDCBP-201ENST00000260130 PRO0461Q9UI25 63 aa11.43□□□□□ -0.58
SDCBP-201ENST00000260130 ETDBQ3ZM63 59 aa11.42□□□□□ -0.58
SDCBP-201ENST00000260130 TMEM170BQ5T4T1 132 aa11.42□□□□□ -0.58
SDCBP-201ENST00000260130 LELP1Q5T871 98 aa11.42□□□□□ -0.58
SDCBP-201ENST00000260130 KRTAP1-5Q9BYS1 174 aa11.42□□□□□ -0.58
SDCBP-201ENST00000260130 TMEM238C9JI98 176 aa11.41□□□□□ -0.58
SDCBP-201ENST00000260130 RTL8CO15255 209 aa11.41□□□□□ -0.58
SDCBP-201ENST00000260130 UBE2D3P61077 147 aa11.41□□□□□ -0.58
SDCBP-201ENST00000260130 UBE2D2P62837 147 aa11.41□□□□□ -0.58
SDCBP-201ENST00000260130 SIGMAR1Q99720 223 aa11.41□□□□□ -0.58
SDCBP-201ENST00000260130 EPPK1P58107 5090 aaKnown RBP11.4□□□□□ -0.58
SDCBP-201ENST00000260130 M0QY20 66 aa11.4□□□□□ -0.58
SDCBP-201ENST00000260130 DNAH10OSP0CZ25 163 aa11.4□□□□□ -0.59
SDCBP-201ENST00000260130 LINC00336Q6ZUF6 198 aa11.4□□□□□ -0.59
SDCBP-201ENST00000260130 C6orf223Q8N319 242 aa11.4□□□□□ -0.59
SDCBP-201ENST00000260130 FAT2Q9NYQ8 4349 aa11.4□□□□□ -0.59
SDCBP-201ENST00000260130 DNAH17Q9UFH2 4485 aa11.39□□□□□ -0.59
SDCBP-201ENST00000260130 IGHV3-38A0A0C4DH36 116 aa11.39□□□□□ -0.59
SDCBP-201ENST00000260130 GAGE12HA6NDE8 117 aa11.39□□□□□ -0.59
SDCBP-201ENST00000260130 TSPAN13O95857 204 aa11.39□□□□□ -0.59
SDCBP-201ENST00000260130 SCGB1A1P11684 91 aa11.39□□□□□ -0.59
SDCBP-201ENST00000260130 NFE4Q86UQ8 179 aa11.39□□□□□ -0.59
SDCBP-201ENST00000260130 LGALS3P17931 250 aaKnown RBP11.38□□□□□ -0.59
SDCBP-201ENST00000260130 DEFB104AQ8WTQ1 72 aa11.38□□□□□ -0.59
SDCBP-201ENST00000260130 J3QQQ9 107 aa11.38□□□□□ -0.59
SDCBP-201ENST00000260130 APOMO95445 188 aa11.38□□□□□ -0.59
SDCBP-201ENST00000260130 LOC107984156A0A0G2JMH3 177 aa11.37□□□□□ -0.59
SDCBP-201ENST00000260130 ARL17AQ8IVW1 177 aa11.37□□□□□ -0.59
SDCBP-201ENST00000260130 DNAJC30Q96LL9 226 aa11.37□□□□□ -0.59
SDCBP-201ENST00000260130 I3L3M4 83 aa11.37□□□□□ -0.59
SDCBP-201ENST00000260130 IGHV3-30P01768 117 aa11.37□□□□□ -0.59
SDCBP-201ENST00000260130 IGHV3-30-5P0DP03 117 aa11.37□□□□□ -0.59
SDCBP-201ENST00000260130 TSPEAR-AS2P59090 65 aa11.37□□□□□ -0.59
SDCBP-201ENST00000260130 MTURNQ8N3F0 131 aa11.37□□□□□ -0.59
SDCBP-201ENST00000260130 TNFRSF18Q9Y5U5 241 aa11.37□□□□□ -0.59
SDCBP-201ENST00000260130 LINC01556Q5JQF7 62 aa11.36□□□□□ -0.59
SDCBP-201ENST00000260130 LEPROTO15243 131 aa11.35□□□□□ -0.59
SDCBP-201ENST00000260130 PSMB2P49721 201 aa11.35□□□□□ -0.59
SDCBP-201ENST00000260130 C20orf203Q8NBC4 194 aa11.35□□□□□ -0.59
SDCBP-201ENST00000260130 DAZ4Q86SG3 579 aaKnown RBP11.35□□□□□ -0.59
SDCBP-201ENST00000260130 DAZ3Q9NR90 486 aaKnown RBP11.35□□□□□ -0.59
SDCBP-201ENST00000260130 TRBV20-1A0A075B6N2 111 aa11.34□□□□□ -0.59
SDCBP-201ENST00000260130 TMEM223A0PJW6 202 aa11.34□□□□□ -0.59
SDCBP-201ENST00000260130 C10orf126Q8N4M7 172 aa11.34□□□□□ -0.59
SDCBP-201ENST00000260130 AMELXQ99217 191 aa11.34□□□□□ -0.59
SDCBP-201ENST00000260130 CFC1BP0CG36 223 aa11.33□□□□□ -0.6
SDCBP-201ENST00000260130 CFC1P0CG37 223 aa11.33□□□□□ -0.6
SDCBP-201ENST00000260130 TRBV6-8A0A0A6YYG3 113 aa11.33□□□□□ -0.6
SDCBP-201ENST00000260130 IGHV3-33P01772 117 aa11.33□□□□□ -0.6
SDCBP-201ENST00000260130 IGHV3-30-3P0DP02 117 aa11.33□□□□□ -0.6
SDCBP-201ENST00000260130 VCX2Q9H322 139 aa11.33□□□□□ -0.6
SDCBP-201ENST00000260130 PRO1854Q9UHT4 67 aa11.33□□□□□ -0.6
SDCBP-201ENST00000260130 HECTD4Q9Y4D8 3996 aa11.32□□□□□ -0.6
SDCBP-201ENST00000260130 FOXI1Q12951 378 aa11.32□□□□□ -0.6
SDCBP-201ENST00000260130 OPRPNQ99935 248 aaPredicted RBP11.32□□□□□ -0.6
SDCBP-201ENST00000260130 SMCPP49901 116 aaPredicted RBP11.31□□□□□ -0.6
SDCBP-201ENST00000260130 IGLV4-3A0A075B6K6 122 aa11.31□□□□□ -0.6
SDCBP-201ENST00000260130 ZNF22P17026 224 aaPredicted RBP11.31□□□□□ -0.6
SDCBP-201ENST00000260130 SMAGPQ0VAQ4 97 aa11.31□□□□□ -0.6
SDCBP-201ENST00000260130 SFTA2Q6UW10 78 aa11.31□□□□□ -0.6
SDCBP-201ENST00000260130 NTM-AS1Q6ZSK4 140 aa11.3□□□□□ -0.6
SDCBP-201ENST00000260130 Q8N3U1 123 aa11.3□□□□□ -0.6
SDCBP-201ENST00000260130 PYGO1Q9Y3Y4 419 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 184.1 ms