RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 NDUFA1O15239 70 aa5.31□□□□□ -1.56
GPNMB-201ENST00000258733 C1orf229Q6ZS94 237 aaPredicted RBP5.31□□□□□ -1.56
GPNMB-201ENST00000258733 ZNF702PQ9H963 129 aa5.31□□□□□ -1.56
GPNMB-201ENST00000258733 DOPEY2Q9Y3R5 2298 aa5.31□□□□□ -1.56
GPNMB-201ENST00000258733 ZNHIT1O43257 154 aa5.31□□□□□ -1.56
GPNMB-201ENST00000258733 PLA2G2AP14555 144 aa5.31□□□□□ -1.56
GPNMB-201ENST00000258733 POLR2KP53803 58 aaKnown RBP5.31□□□□□ -1.56
GPNMB-201ENST00000258733 ABCA1O95477 2261 aa5.31□□□□□ -1.56
GPNMB-201ENST00000258733 NCOR2Q9Y618 2525 aa5.31□□□□□ -1.56
GPNMB-201ENST00000258733 H3BRN7 92 aa5.3□□□□□ -1.56
GPNMB-201ENST00000258733 C11orf21Q9P2W6 132 aa5.3□□□□□ -1.56
GPNMB-201ENST00000258733 LAMA1P25391 3075 aa5.3□□□□□ -1.56
GPNMB-201ENST00000258733 PRR4Q16378 134 aa5.3□□□□□ -1.56
GPNMB-201ENST00000258733 C1orf134Q5TEV5 83 aa5.3□□□□□ -1.56
GPNMB-201ENST00000258733 BRWD1Q9NSI6 2320 aa5.3□□□□□ -1.56
GPNMB-201ENST00000258733 COL27A1Q8IZC6 1860 aaPredicted RBP5.3□□□□□ -1.56
GPNMB-201ENST00000258733 ZFHX4Q86UP3 3567 aa5.3□□□□□ -1.56
GPNMB-201ENST00000258733 MED13LQ71F56 2210 aa5.3□□□□□ -1.56
GPNMB-201ENST00000258733 SAA2P0DJI9 122 aaPredicted RBP5.3□□□□□ -1.56
GPNMB-201ENST00000258733 SMIM11BQ8TCY0 68 aa5.3□□□□□ -1.56
GPNMB-201ENST00000258733 UNC79Q9P2D8 2635 aa5.29□□□□□ -1.56
GPNMB-201ENST00000258733 HIGD2BQ4VC39 106 aa5.29□□□□□ -1.56
GPNMB-201ENST00000258733 Q6ZQT0 140 aa5.29□□□□□ -1.56
GPNMB-201ENST00000258733 C22orf34Q6ZV56 151 aa5.29□□□□□ -1.56
GPNMB-201ENST00000258733 TRBV6-5A0A0K0K1A5 114 aa5.29□□□□□ -1.56
GPNMB-201ENST00000258733 PTPRZ1P23471 2315 aaPredicted RBP5.28□□□□□ -1.56
GPNMB-201ENST00000258733 IGLV4-3A0A075B6K6 122 aa5.28□□□□□ -1.56
GPNMB-201ENST00000258733 IGHV3-38A0A0C4DH36 116 aa5.28□□□□□ -1.56
GPNMB-201ENST00000258733 INAFM1C9JVW0 142 aa5.28□□□□□ -1.56
GPNMB-201ENST00000258733 MAST4O15021 2626 aa5.28□□□□□ -1.56
GPNMB-201ENST00000258733 ABCA4P78363 2273 aa5.28□□□□□ -1.56
GPNMB-201ENST00000258733 FASNP49327 2511 aaKnown RBP5.28□□□□□ -1.56
GPNMB-201ENST00000258733 CFAP54Q96N23 3096 aa5.27□□□□□ -1.57
GPNMB-201ENST00000258733 IGHV4OR15-8A0A075B7B6 117 aa5.27□□□□□ -1.57
GPNMB-201ENST00000258733 A0A087WW49 117 aa5.27□□□□□ -1.57
GPNMB-201ENST00000258733 IGHV3-21A0A0B4J1V1 117 aa5.27□□□□□ -1.57
GPNMB-201ENST00000258733 IGHV4-31P0DP07 118 aa5.27□□□□□ -1.57
GPNMB-201ENST00000258733 C9orf66Q5T8R8 295 aa5.27□□□□□ -1.57
GPNMB-201ENST00000258733 Q8NAQ8 132 aa5.27□□□□□ -1.57
GPNMB-201ENST00000258733 ZCCHC13Q8WW36 166 aaKnown RBP5.27□□□□□ -1.57
GPNMB-201ENST00000258733 GCN1Q92616 2671 aaKnown RBP5.27□□□□□ -1.57
GPNMB-201ENST00000258733 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.27□□□□□ -1.57
GPNMB-201ENST00000258733 IGHV3-16A0A0C4DH30 117 aa5.27□□□□□ -1.57
GPNMB-201ENST00000258733 LCE6AA0A183 80 aa5.27□□□□□ -1.57
GPNMB-201ENST00000258733 DCHS1Q96JQ0 3298 aa5.26□□□□□ -1.57
GPNMB-201ENST00000258733 LOC110117498A0A087WWA1 95 aa5.26□□□□□ -1.57
GPNMB-201ENST00000258733 J3QKU1 62 aa5.26□□□□□ -1.57
GPNMB-201ENST00000258733 C10orf55Q5SWW7 151 aa5.26□□□□□ -1.57
GPNMB-201ENST00000258733 LINC00167Q96N53 147 aa5.26□□□□□ -1.57
GPNMB-201ENST00000258733 A0A087X002 238 aa5.26□□□□□ -1.57
GPNMB-201ENST00000258733 IGHV3-15A0A0B4J1V0 119 aa5.26□□□□□ -1.57
GPNMB-201ENST00000258733 ELOF1P60002 83 aaKnown RBP5.26□□□□□ -1.57
GPNMB-201ENST00000258733 NOTCH2NLQ7Z3S9 236 aa5.26□□□□□ -1.57
GPNMB-201ENST00000258733 B9D2Q9BPU9 175 aa5.26□□□□□ -1.57
GPNMB-201ENST00000258733 TPRP12270 2363 aaKnown RBP5.25□□□□□ -1.57
GPNMB-201ENST00000258733 LINC00208Q96KT6 92 aa5.25□□□□□ -1.57
GPNMB-201ENST00000258733 KLK9Q9UKQ9 250 aa5.25□□□□□ -1.57
GPNMB-201ENST00000258733 OTOGLQ3ZCN5 2332 aa5.25□□□□□ -1.57
GPNMB-201ENST00000258733 RIF1Q5UIP0 2472 aaKnown RBP5.25□□□□□ -1.57
GPNMB-201ENST00000258733 M0R2N4 97 aa5.25□□□□□ -1.57
GPNMB-201ENST00000258733 ZNF462Q96JM2 2506 aa5.24□□□□□ -1.57
GPNMB-201ENST00000258733 ROMO1P60602 79 aa5.24□□□□□ -1.57
GPNMB-201ENST00000258733 IGHV3OR16-13A0A075B7E8 117 aa5.24□□□□□ -1.57
GPNMB-201ENST00000258733 Q9BRP9 147 aa5.23□□□□□ -1.57
GPNMB-201ENST00000258733 CR1P17927 2039 aa5.23□□□□□ -1.57
GPNMB-201ENST00000258733 ANKRD11Q6UB99 2663 aaPredicted RBP5.23□□□□□ -1.57
GPNMB-201ENST00000258733 IGKV2-28A0A075B6P5 120 aa5.23□□□□□ -1.57
GPNMB-201ENST00000258733 NDUFB1O75438 58 aa5.23□□□□□ -1.57
GPNMB-201ENST00000258733 IGKV2D-28P01615 120 aa5.23□□□□□ -1.57
GPNMB-201ENST00000258733 RPL27AP46776 148 aaKnown RBP5.23□□□□□ -1.57
GPNMB-201ENST00000258733 TMEM167AQ8TBQ9 72 aa5.23□□□□□ -1.57
GPNMB-201ENST00000258733 IGHV3-49A0A0A0MS15 119 aa5.22□□□□□ -1.57
GPNMB-201ENST00000258733 LY6G6EA0A0G2JKS1 128 aa5.22□□□□□ -1.57
GPNMB-201ENST00000258733 IGHV3-64DA0A0J9YX35 117 aa5.22□□□□□ -1.57
GPNMB-201ENST00000258733 IGKV1-17P01599 117 aa5.22□□□□□ -1.57
GPNMB-201ENST00000258733 IGFL4Q6B9Z1 124 aa5.22□□□□□ -1.57
GPNMB-201ENST00000258733 U3KQA8 63 aa5.22□□□□□ -1.57
GPNMB-201ENST00000258733 IGKV4-1P06312 121 aa5.22□□□□□ -1.57
GPNMB-201ENST00000258733 CSAG1Q6PB30 78 aa5.22□□□□□ -1.57
GPNMB-201ENST00000258733 LINC01006Q8NI28 216 aa5.22□□□□□ -1.57
GPNMB-201ENST00000258733 RNASE1P07998 156 aaKnown RBP5.22□□□□□ -1.57
GPNMB-201ENST00000258733 NTM-AS1Q6ZSK4 140 aa5.22□□□□□ -1.57
GPNMB-201ENST00000258733 WDFY3Q8IZQ1 3526 aa5.21□□□□□ -1.57
GPNMB-201ENST00000258733 PDE6GP18545 87 aa5.21□□□□□ -1.58
GPNMB-201ENST00000258733 DEFB133Q30KQ1 61 aa5.21□□□□□ -1.58
GPNMB-201ENST00000258733 CLPSL1A2RUU4 121 aa5.21□□□□□ -1.58
GPNMB-201ENST00000258733 SUMO4Q6EEV6 95 aa5.21□□□□□ -1.58
GPNMB-201ENST00000258733 DEFB119Q8N690 84 aa5.21□□□□□ -1.58
GPNMB-201ENST00000258733 IGLV4-60A0A075B6I1 120 aa5.2□□□□□ -1.58
GPNMB-201ENST00000258733 IGHV3-73A0A0B4J1V6 119 aa5.2□□□□□ -1.58
GPNMB-201ENST00000258733 IGHV1-3A0A0C4DH29 117 aa5.2□□□□□ -1.58
GPNMB-201ENST00000258733 SPINK7P58062 85 aa5.2□□□□□ -1.58
GPNMB-201ENST00000258733 LINC00315P59091 139 aa5.2□□□□□ -1.58
GPNMB-201ENST00000258733 FAM74A4Q5TZK3 123 aa5.2□□□□□ -1.58
GPNMB-201ENST00000258733 AHCTF1Q8WYP5 2266 aa5.2□□□□□ -1.58
GPNMB-201ENST00000258733 A0A1W2PNM2 257 aa5.2□□□□□ -1.58
GPNMB-201ENST00000258733 PRAC2D3DTV9 90 aa5.2□□□□□ -1.58
GPNMB-201ENST00000258733 RTL8CO15255 209 aa5.2□□□□□ -1.58
GPNMB-201ENST00000258733 IGHV3-53P01767 116 aa5.2□□□□□ -1.58
GPNMB-201ENST00000258733 Q8N9L7 120 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms