RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SLURP1P55000 103 aa10.32□□□□□ -0.76
SDC1-201ENST00000254351 MIR7-3HGQ8N6C7 128 aa10.32□□□□□ -0.76
SDC1-201ENST00000254351 ABCA12Q86UK0 2595 aa10.32□□□□□ -0.76
SDC1-201ENST00000254351 TRGV1A0A0A0MS02 117 aa10.31□□□□□ -0.76
SDC1-201ENST00000254351 A6NDX4 124 aa10.31□□□□□ -0.76
SDC1-201ENST00000254351 LINC00158P58513 81 aa10.31□□□□□ -0.76
SDC1-201ENST00000254351 CCDC168Q8NDH2 2452 aa10.31□□□□□ -0.76
SDC1-201ENST00000254351 LINC00337Q8N6G1 96 aa10.31□□□□□ -0.76
SDC1-201ENST00000254351 IMUPQ9GZP8 106 aa10.31□□□□□ -0.76
SDC1-201ENST00000254351 LINC00846Q9NV44 126 aa10.31□□□□□ -0.76
SDC1-201ENST00000254351 ZNF462Q96JM2 2506 aa10.31□□□□□ -0.76
SDC1-201ENST00000254351 CRPP02741 224 aa10.31□□□□□ -0.76
SDC1-201ENST00000254351 SMIM9A6NGZ8 99 aa10.3□□□□□ -0.76
SDC1-201ENST00000254351 LECT2O14960 151 aa10.3□□□□□ -0.76
SDC1-201ENST00000254351 BEAN1Q3B7T3 259 aa10.3□□□□□ -0.76
SDC1-201ENST00000254351 TRACP01848 142 aa10.3□□□□□ -0.76
SDC1-201ENST00000254351 K7EMT4 169 aa10.29□□□□□ -0.76
SDC1-201ENST00000254351 HILS1P60008 231 aa10.29□□□□□ -0.76
SDC1-201ENST00000254351 C2orf48Q96LS8 159 aa10.29□□□□□ -0.76
SDC1-201ENST00000254351 Q96MF0 132 aa10.29□□□□□ -0.76
SDC1-201ENST00000254351 SND1-IT1Q9HBX3 110 aa10.29□□□□□ -0.76
SDC1-201ENST00000254351 KMT2BQ9UMN6 2715 aaPredicted RBP10.29□□□□□ -0.76
SDC1-201ENST00000254351 PSMB8P28062 276 aa10.28□□□□□ -0.76
SDC1-201ENST00000254351 IGHV4-30-2A0A087WSY4 118 aa10.28□□□□□ -0.76
SDC1-201ENST00000254351 HIST2H2BCQ6DN03 193 aa10.28□□□□□ -0.76
SDC1-201ENST00000254351 C11orf44Q8N8P7 122 aa10.28□□□□□ -0.76
SDC1-201ENST00000254351 TIMM17BO60830 172 aa10.27□□□□□ -0.76
SDC1-201ENST00000254351 INAFM2P0DMQ5 153 aa10.27□□□□□ -0.76
SDC1-201ENST00000254351 ZNF415Q09FC8 603 aa10.27□□□□□ -0.76
SDC1-201ENST00000254351 SMIM11BQ8TCY0 68 aa10.27□□□□□ -0.76
SDC1-201ENST00000254351 TEX15Q9BXT5 2789 aa10.27□□□□□ -0.76
SDC1-201ENST00000254351 DOPEY1Q5JWR5 2465 aa10.27□□□□□ -0.77
SDC1-201ENST00000254351 C4orf26Q17RF5 130 aa10.27□□□□□ -0.77
SDC1-201ENST00000254351 C5orf38Q86SI9 138 aa10.27□□□□□ -0.77
SDC1-201ENST00000254351 PAX4O43316 350 aa10.27□□□□□ -0.77
SDC1-201ENST00000254351 RPL36AP83881 106 aaKnown RBP10.27□□□□□ -0.77
SDC1-201ENST00000254351 RPL36ALQ969Q0 106 aaKnown RBP10.27□□□□□ -0.77
SDC1-201ENST00000254351 DEFB112Q30KQ8 113 aa10.26□□□□□ -0.77
SDC1-201ENST00000254351 H3BUA1 57 aa10.26□□□□□ -0.77
SDC1-201ENST00000254351 TRAV23DV6A0A075B6W5 121 aa10.25□□□□□ -0.77
SDC1-201ENST00000254351 ATOX1O00244 68 aa10.25□□□□□ -0.77
SDC1-201ENST00000254351 NTM-AS1Q6ZSK4 140 aa10.25□□□□□ -0.77
SDC1-201ENST00000254351 IGKV2-28A0A075B6P5 120 aa10.24□□□□□ -0.77
SDC1-201ENST00000254351 LOC100131303A0A0U1RQF7 123 aa10.24□□□□□ -0.77
SDC1-201ENST00000254351 IGKV2D-28P01615 120 aa10.24□□□□□ -0.77
SDC1-201ENST00000254351 HRCT1Q6UXD1 115 aa10.24□□□□□ -0.77
SDC1-201ENST00000254351 IGLV5-39A0A0G2JS06 123 aa10.24□□□□□ -0.77
SDC1-201ENST00000254351 UBE2L6O14933 153 aa10.24□□□□□ -0.77
SDC1-201ENST00000254351 CXCL5P42830 114 aa10.24□□□□□ -0.77
SDC1-201ENST00000254351 RPL18AQ02543 176 aaKnown RBP10.24□□□□□ -0.77
SDC1-201ENST00000254351 C5orf47Q569G3 176 aa10.24□□□□□ -0.77
SDC1-201ENST00000254351 C10orf105Q8TEF2 133 aa10.24□□□□□ -0.77
SDC1-201ENST00000254351 NBPF19A0A087WUL8 3843 aa10.23□□□□□ -0.77
SDC1-201ENST00000254351 ANKRD17O75179 2603 aaKnown RBP10.23□□□□□ -0.77
SDC1-201ENST00000254351 UBR5O95071 2799 aaPredicted RBP10.23□□□□□ -0.77
SDC1-201ENST00000254351 OXTP01178 125 aa10.23□□□□□ -0.77
SDC1-201ENST00000254351 PLA2G2AP14555 144 aa10.23□□□□□ -0.77
SDC1-201ENST00000254351 PRR3P79522 188 aaKnown RBP10.23□□□□□ -0.77
SDC1-201ENST00000254351 Q6ZTI0 123 aa10.23□□□□□ -0.77
SDC1-201ENST00000254351 USP17L23D6RBM5 183 aa10.23□□□□□ -0.77
SDC1-201ENST00000254351 LINC01561Q8N1V8 128 aa10.22□□□□□ -0.77
SDC1-201ENST00000254351 GCN1Q92616 2671 aaKnown RBP10.22□□□□□ -0.77
SDC1-201ENST00000254351 SETXQ7Z333 2677 aaKnown RBP10.22□□□□□ -0.77
SDC1-201ENST00000254351 IGLV5-45A0A087WSX0 123 aa10.21□□□□□ -0.77
SDC1-201ENST00000254351 CRYGAP11844 174 aa10.21□□□□□ -0.78
SDC1-201ENST00000254351 DPH3Q96FX2 82 aa10.21□□□□□ -0.78
SDC1-201ENST00000254351 TRAV13-2A0A0B4J235 113 aa10.2□□□□□ -0.78
SDC1-201ENST00000254351 MSMBP08118 114 aa10.2□□□□□ -0.78
SDC1-201ENST00000254351 CLPSL2Q6UWE3 100 aa10.2□□□□□ -0.78
SDC1-201ENST00000254351 LRRC75A-AS1Q8N1F1 130 aa10.2□□□□□ -0.78
SDC1-201ENST00000254351 C11orf72Q8NBR9 251 aa10.2□□□□□ -0.78
SDC1-201ENST00000254351 CCL19Q99731 98 aa10.2□□□□□ -0.78
SDC1-201ENST00000254351 F5H768 121 aa10.2□□□□□ -0.78
SDC1-201ENST00000254351 FAM19A1Q7Z5A9 133 aa10.2□□□□□ -0.78
SDC1-201ENST00000254351 DYNLRB2Q8TF09 96 aa10.2□□□□□ -0.78
SDC1-201ENST00000254351 CCL18P55774 89 aa10.19□□□□□ -0.78
SDC1-201ENST00000254351 CDC42SE2Q9NRR3 84 aa10.19□□□□□ -0.78
SDC1-201ENST00000254351 APCP25054 2843 aa10.19□□□□□ -0.78
SDC1-201ENST00000254351 COPS9Q8WXC6 57 aa10.19□□□□□ -0.78
SDC1-201ENST00000254351 A0A1W2PRX2 142 aa10.18□□□□□ -0.78
SDC1-201ENST00000254351 NOP10Q9NPE3 64 aaKnown RBP10.18□□□□□ -0.78
SDC1-201ENST00000254351 SERP2Q8N6R1 65 aa10.18□□□□□ -0.78
SDC1-201ENST00000254351 COX7B2Q8TF08 81 aa10.18□□□□□ -0.78
SDC1-201ENST00000254351 RPL28P46779 137 aaKnown RBP10.18□□□□□ -0.78
SDC1-201ENST00000254351 ENHOQ6UWT2 76 aa10.18□□□□□ -0.78
SDC1-201ENST00000254351 FHL2Q14192 279 aa10.17□□□□□ -0.78
SDC1-201ENST00000254351 MTORP42345 2549 aa10.17□□□□□ -0.78
SDC1-201ENST00000254351 C20orf197Q8N268 126 aa10.17□□□□□ -0.78
SDC1-201ENST00000254351 MAP6D1Q9H9H5 199 aa10.17□□□□□ -0.78
SDC1-201ENST00000254351 J3QKU1 62 aa10.16□□□□□ -0.78
SDC1-201ENST00000254351 INSP01308 110 aa10.16□□□□□ -0.78
SDC1-201ENST00000254351 IGLV4-60A0A075B6I1 120 aa10.16□□□□□ -0.78
SDC1-201ENST00000254351 TRGV2A0A075B6R0 118 aa10.16□□□□□ -0.78
SDC1-201ENST00000254351 TMEM89A2RUT3 159 aa10.16□□□□□ -0.78
SDC1-201ENST00000254351 GHRHP01286 108 aa10.16□□□□□ -0.78
SDC1-201ENST00000254351 FAM222AQ5U5X8 452 aa10.16□□□□□ -0.78
SDC1-201ENST00000254351 K7EQD1 137 aa10.14□□□□□ -0.79
SDC1-201ENST00000254351 A0A096LPF7 62 aa10.13□□□□□ -0.79
SDC1-201ENST00000254351 XCL1P47992 114 aa10.13□□□□□ -0.79
SDC1-201ENST00000254351 TMEM243Q9BU79 118 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms