RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 PRM2P04554 102 aa12.24□□□□□ -0.45
FOXA1-201ENST00000250448 MEIG1Q5JSS6 88 aa12.24□□□□□ -0.45
FOXA1-201ENST00000250448 ZNF415Q09FC8 603 aa12.23□□□□□ -0.45
FOXA1-201ENST00000250448 LINC00467Q9BRT7 94 aa12.23□□□□□ -0.45
FOXA1-201ENST00000250448 RBMY1BA6NDE4 496 aaKnown RBP12.23□□□□□ -0.45
FOXA1-201ENST00000250448 RBMY1EA6NEQ0 496 aaKnown RBP12.23□□□□□ -0.45
FOXA1-201ENST00000250448 RBMY1DP0C7P1 496 aaKnown RBP12.23□□□□□ -0.45
FOXA1-201ENST00000250448 CLEC2BQ92478 149 aa12.23□□□□□ -0.45
FOXA1-201ENST00000250448 MAST4O15021 2626 aa12.23□□□□□ -0.45
FOXA1-201ENST00000250448 A8MTW9 85 aa12.22□□□□□ -0.45
FOXA1-201ENST00000250448 TIMM17BO60830 172 aa12.22□□□□□ -0.45
FOXA1-201ENST00000250448 NDUFV3P56181 108 aaKnown RBP12.22□□□□□ -0.45
FOXA1-201ENST00000250448 PIK3CD-AS1Q5SR53 167 aa12.22□□□□□ -0.45
FOXA1-201ENST00000250448 FAM19A5Q7Z5A7 132 aaPredicted RBP12.22□□□□□ -0.45
FOXA1-201ENST00000250448 LST1O00453 97 aa12.21□□□□□ -0.45
FOXA1-201ENST00000250448 LINC00694P0DN24 101 aa12.21□□□□□ -0.45
FOXA1-201ENST00000250448 IFITM1P13164 125 aa12.21□□□□□ -0.45
FOXA1-201ENST00000250448 Q6Q795 121 aa12.21□□□□□ -0.45
FOXA1-201ENST00000250448 C15orf53Q8NAA6 179 aa12.21□□□□□ -0.45
FOXA1-201ENST00000250448 SPATA3Q8NHX4 192 aa12.2□□□□□ -0.46
FOXA1-201ENST00000250448 IGHV3-38A0A0C4DH36 116 aa12.2□□□□□ -0.46
FOXA1-201ENST00000250448 CDKN2A-AS1Q9UH64 79 aa12.2□□□□□ -0.46
FOXA1-201ENST00000250448 NDUFA1O15239 70 aa12.19□□□□□ -0.46
FOXA1-201ENST00000250448 MAP6D1Q9H9H5 199 aa12.19□□□□□ -0.46
FOXA1-201ENST00000250448 TRRAPQ9Y4A5 3859 aa12.19□□□□□ -0.46
FOXA1-201ENST00000250448 DAND5Q8N907 189 aa12.19□□□□□ -0.46
FOXA1-201ENST00000250448 DNAJC30Q96LL9 226 aa12.19□□□□□ -0.46
FOXA1-201ENST00000250448 IGHV3-53P01767 116 aa12.18□□□□□ -0.46
FOXA1-201ENST00000250448 FBN1P35555 2871 aaKnown RBP12.18□□□□□ -0.46
FOXA1-201ENST00000250448 IGLV5-45A0A087WSX0 123 aa12.18□□□□□ -0.46
FOXA1-201ENST00000250448 TTC32Q5I0X7 151 aa12.18□□□□□ -0.46
FOXA1-201ENST00000250448 TIRAPP58753 221 aa12.17□□□□□ -0.46
FOXA1-201ENST00000250448 PF4P02776 101 aa12.17□□□□□ -0.46
FOXA1-201ENST00000250448 SEC61GP60059 68 aa12.17□□□□□ -0.46
FOXA1-201ENST00000250448 C11orf72Q8NBR9 251 aa12.16□□□□□ -0.46
FOXA1-201ENST00000250448 TMEM101Q96IK0 257 aa12.16□□□□□ -0.46
FOXA1-201ENST00000250448 ODF3L2Q3SX64 289 aa12.16□□□□□ -0.46
FOXA1-201ENST00000250448 STAB1Q9NY15 2570 aa12.15□□□□□ -0.46
FOXA1-201ENST00000250448 DEFB121Q5J5C9 76 aa12.15□□□□□ -0.46
FOXA1-201ENST00000250448 LINC01587Q99440 93 aa12.15□□□□□ -0.46
FOXA1-201ENST00000250448 WFDC10AQ9H1F0 79 aa12.15□□□□□ -0.46
FOXA1-201ENST00000250448 FAM240AA0A1B0GVK7 77 aa12.14□□□□□ -0.47
FOXA1-201ENST00000250448 CIRBPQ14011 172 aaKnown RBP12.14□□□□□ -0.47
FOXA1-201ENST00000250448 BEAN1Q3B7T3 259 aa12.14□□□□□ -0.47
FOXA1-201ENST00000250448 DGAT2L7PQ6IED9 249 aa12.14□□□□□ -0.47
FOXA1-201ENST00000250448 RS1O15537 224 aa12.14□□□□□ -0.47
FOXA1-201ENST00000250448 KIR2DL5BQ8NHK3 375 aa12.13□□□□□ -0.47
FOXA1-201ENST00000250448 COX6A2Q02221 97 aa12.13□□□□□ -0.47
FOXA1-201ENST00000250448 LINC00308Q8TCZ7 52 aa12.13□□□□□ -0.47
FOXA1-201ENST00000250448 IGHV3OR16-12A0A075B7B8 117 aa12.12□□□□□ -0.47
FOXA1-201ENST00000250448 IGLV5-39A0A0G2JS06 123 aa12.12□□□□□ -0.47
FOXA1-201ENST00000250448 Q9H8V8 135 aa12.12□□□□□ -0.47
FOXA1-201ENST00000250448 INSP01308 110 aa12.12□□□□□ -0.47
FOXA1-201ENST00000250448 TMEM126AQ9H061 195 aa12.12□□□□□ -0.47
FOXA1-201ENST00000250448 HERVK_113P63121 156 aa12.12□□□□□ -0.47
FOXA1-201ENST00000250448 LINC00482Q8N8I6 264 aa12.12□□□□□ -0.47
FOXA1-201ENST00000250448 IGLV1-51P01701 117 aa12.11□□□□□ -0.47
FOXA1-201ENST00000250448 LINC00242Q5T6M2 205 aa12.1□□□□□ -0.47
FOXA1-201ENST00000250448 ZNF625Q96I27 306 aaPredicted RBP12.09□□□□□ -0.47
FOXA1-201ENST00000250448 COX7A2LO14548 114 aa12.09□□□□□ -0.47
FOXA1-201ENST00000250448 A0A0U1RRA0 63 aa12.08□□□□□ -0.47
FOXA1-201ENST00000250448 XCL2Q9UBD3 114 aa12.08□□□□□ -0.48
FOXA1-201ENST00000250448 SMIM1B2RUZ4 78 aa12.08□□□□□ -0.48
FOXA1-201ENST00000250448 KRTAP24-1Q3LI83 254 aa12.08□□□□□ -0.48
FOXA1-201ENST00000250448 SOSTDC1Q6X4U4 206 aa12.07□□□□□ -0.48
FOXA1-201ENST00000250448 FAM19A3Q7Z5A8 133 aa12.07□□□□□ -0.48
FOXA1-201ENST00000250448 COPS9Q8WXC6 57 aa12.07□□□□□ -0.48
FOXA1-201ENST00000250448 STHQ8IWL8 128 aa12.07□□□□□ -0.48
FOXA1-201ENST00000250448 COL6A5A8TX70 2615 aa12.06□□□□□ -0.48
FOXA1-201ENST00000250448 OR13C6PQ8NH95 151 aa12.05□□□□□ -0.48
FOXA1-201ENST00000250448 TRBV7-7A0A0K0K1E9 115 aa12.05□□□□□ -0.48
FOXA1-201ENST00000250448 RPL35AP18077 110 aaKnown RBP12.04□□□□□ -0.48
FOXA1-201ENST00000250448 PRIMA1Q86XR5 153 aa12.04□□□□□ -0.48
FOXA1-201ENST00000250448 MRAPQ8TCY5 172 aa12.04□□□□□ -0.48
FOXA1-201ENST00000250448 NBEAL2Q6ZNJ1 2754 aa12.04□□□□□ -0.48
FOXA1-201ENST00000250448 TRAV13-1A0A0B4J241 112 aa12.04□□□□□ -0.48
FOXA1-201ENST00000250448 PKD1L1Q8TDX9 2849 aa12.04□□□□□ -0.48
FOXA1-201ENST00000250448 TRGV1A0A0A0MS02 117 aa12.03□□□□□ -0.48
FOXA1-201ENST00000250448 IL17DQ8TAD2 202 aa12.03□□□□□ -0.48
FOXA1-201ENST00000250448 C19orf73Q9NVV2 129 aa12.03□□□□□ -0.48
FOXA1-201ENST00000250448 J3KT08 172 aa12.02□□□□□ -0.48
FOXA1-201ENST00000250448 ACYP1P07311 99 aa12.02□□□□□ -0.48
FOXA1-201ENST00000250448 RPL36AP83881 106 aaKnown RBP12.02□□□□□ -0.48
FOXA1-201ENST00000250448 RPL36ALQ969Q0 106 aaKnown RBP12.02□□□□□ -0.48
FOXA1-201ENST00000250448 K7EQD1 137 aa12.02□□□□□ -0.49
FOXA1-201ENST00000250448 NTM-AS1Q6ZSK4 140 aa12.01□□□□□ -0.49
FOXA1-201ENST00000250448 TRACP01848 142 aa12.01□□□□□ -0.49
FOXA1-201ENST00000250448 HRCT1Q6UXD1 115 aa12.01□□□□□ -0.49
FOXA1-201ENST00000250448 TRBV10-1A0A0K0K1A3 114 aa12.01□□□□□ -0.49
FOXA1-201ENST00000250448 C4orf26Q17RF5 130 aa12.01□□□□□ -0.49
FOXA1-201ENST00000250448 C1orf158Q8N1D5 194 aa12.01□□□□□ -0.49
FOXA1-201ENST00000250448 DAZ2Q13117 558 aaKnown RBP12□□□□□ -0.49
FOXA1-201ENST00000250448 DAZ4Q86SG3 579 aaKnown RBP12□□□□□ -0.49
FOXA1-201ENST00000250448 DAZ3Q9NR90 486 aaKnown RBP12□□□□□ -0.49
FOXA1-201ENST00000250448 CDC42SE2Q9NRR3 84 aa12□□□□□ -0.49
FOXA1-201ENST00000250448 C1orf43Q9BWL3 253 aa11.99□□□□□ -0.49
FOXA1-201ENST00000250448 KLK5Q9Y337 293 aaPredicted RBP11.99□□□□□ -0.49
FOXA1-201ENST00000250448 Q6ZTI0 123 aa11.98□□□□□ -0.49
FOXA1-201ENST00000250448 CHCHD5Q9BSY4 110 aa11.98□□□□□ -0.49
FOXA1-201ENST00000250448 GIG44P09565 113 aaPredicted RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms