RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 CEND1Q8N111 149 aa12.51□□□□□ -0.41
VIM-201ENST00000224237 PLEKHB2Q96CS7 222 aa12.51□□□□□ -0.41
VIM-201ENST00000224237 IGHV3-64A0A075B6Q5 118 aa12.5□□□□□ -0.41
VIM-201ENST00000224237 IGHV1-58A0A0C4DH39 117 aa12.5□□□□□ -0.41
VIM-201ENST00000224237 TSPEAR-AS2P59090 65 aa12.5□□□□□ -0.41
VIM-201ENST00000224237 COX6A2Q02221 97 aa12.5□□□□□ -0.41
VIM-201ENST00000224237 DNAH9Q9NYC9 4486 aa12.5□□□□□ -0.41
VIM-201ENST00000224237 C9orf118A6NHY6 69 aa12.49□□□□□ -0.41
VIM-201ENST00000224237 GCSHP23434 173 aa12.49□□□□□ -0.41
VIM-201ENST00000224237 IGHV3-30-3P0DP02 117 aa12.48□□□□□ -0.41
VIM-201ENST00000224237 LYPD5Q6UWN5 251 aa12.48□□□□□ -0.41
VIM-201ENST00000224237 B9D2Q9BPU9 175 aa12.48□□□□□ -0.41
VIM-201ENST00000224237 TRAV8-3A0A0A6YYJ7 113 aa12.48□□□□□ -0.41
VIM-201ENST00000224237 TRAV10A0A0B4J240 114 aa12.48□□□□□ -0.41
VIM-201ENST00000224237 SPINK8P0C7L1 97 aa12.48□□□□□ -0.41
VIM-201ENST00000224237 SMIM13P0DJ93 91 aa12.48□□□□□ -0.41
VIM-201ENST00000224237 KRTAP21-3Q3LHN1 58 aa12.48□□□□□ -0.41
VIM-201ENST00000224237 IGKV3OR2-268A0A0C4DH90 116 aa12.47□□□□□ -0.41
VIM-201ENST00000224237 STAB2Q8WWQ8 2551 aa12.46□□□□□ -0.41
VIM-201ENST00000224237 FXYD2P54710 66 aa12.46□□□□□ -0.41
VIM-201ENST00000224237 SCGB1D4Q6XE38 83 aa12.46□□□□□ -0.41
VIM-201ENST00000224237 HIST1H4GQ99525 98 aa12.46□□□□□ -0.42
VIM-201ENST00000224237 MEGF8Q7Z7M0 2845 aa12.45□□□□□ -0.42
VIM-201ENST00000224237 LINC00959A0A1B0GUT2 108 aa12.44□□□□□ -0.42
VIM-201ENST00000224237 IGLV5-39A0A0G2JS06 123 aa12.43□□□□□ -0.42
VIM-201ENST00000224237 ANGP03950 147 aaKnown RBP12.43□□□□□ -0.42
VIM-201ENST00000224237 SMIM1B2RUZ4 78 aa12.42□□□□□ -0.42
VIM-201ENST00000224237 SS18Q15532 418 aa12.42□□□□□ -0.42
VIM-201ENST00000224237 H3BUT2 72 aa12.42□□□□□ -0.42
VIM-201ENST00000224237 LINC00269Q8N2A0 174 aa12.42□□□□□ -0.42
VIM-201ENST00000224237 Q8N3U1 123 aa12.42□□□□□ -0.42
VIM-201ENST00000224237 C15orf53Q8NAA6 179 aa12.42□□□□□ -0.42
VIM-201ENST00000224237 PRKDCP78527 4128 aaKnown RBP12.41□□□□□ -0.42
VIM-201ENST00000224237 IGHV3OR16-9A0A0B4J2B5 98 aa12.41□□□□□ -0.42
VIM-201ENST00000224237 K7EP13 123 aa12.41□□□□□ -0.42
VIM-201ENST00000224237 ZFAND6Q6FIF0 208 aa12.41□□□□□ -0.42
VIM-201ENST00000224237 CLPSL2Q6UWE3 100 aa12.41□□□□□ -0.42
VIM-201ENST00000224237 RAB37Q96AX2 223 aa12.41□□□□□ -0.42
VIM-201ENST00000224237 GAGE10A6NGK3 116 aa12.4□□□□□ -0.42
VIM-201ENST00000224237 REG3AQ06141 175 aa12.4□□□□□ -0.42
VIM-201ENST00000224237 GTF2H5Q6ZYL4 71 aa12.4□□□□□ -0.42
VIM-201ENST00000224237 NDUFA12Q9UI09 145 aa12.4□□□□□ -0.42
VIM-201ENST00000224237 NHP2Q9NX24 153 aaKnown RBP12.4□□□□□ -0.42
VIM-201ENST00000224237 ESRGQ1W209 222 aa12.39□□□□□ -0.43
VIM-201ENST00000224237 C10orf126Q8N4M7 172 aa12.38□□□□□ -0.43
VIM-201ENST00000224237 A0A087WZ39 114 aa12.38□□□□□ -0.43
VIM-201ENST00000224237 A0A1W2PPM0 123 aa12.38□□□□□ -0.43
VIM-201ENST00000224237 SPANXB1Q9NS25 103 aaPredicted RBP12.38□□□□□ -0.43
VIM-201ENST00000224237 A0A1B0GWB2 263 aa12.37□□□□□ -0.43
VIM-201ENST00000224237 NHLRC4P0CG21 123 aaPredicted RBP12.37□□□□□ -0.43
VIM-201ENST00000224237 XCL1P47992 114 aa12.37□□□□□ -0.43
VIM-201ENST00000224237 SRSF9Q13242 221 aaKnown RBP eCLIP12.37□□□□□ -0.43
VIM-201ENST00000224237 WFDC10BQ8IUB3 73 aa12.37□□□□□ -0.43
VIM-201ENST00000224237 A0A0J9YXY3 114 aa12.36□□□□□ -0.43
VIM-201ENST00000224237 TMEM238LA0A1B0GVL6 79 aa12.36□□□□□ -0.43
VIM-201ENST00000224237 A6NJY4 79 aa12.36□□□□□ -0.43
VIM-201ENST00000224237 NDUFA1O15239 70 aa12.36□□□□□ -0.43
VIM-201ENST00000224237 FABP2P12104 132 aa12.36□□□□□ -0.43
VIM-201ENST00000224237 PRR34Q9NV39 138 aa12.36□□□□□ -0.43
VIM-201ENST00000224237 KLK12Q9UKR0 248 aa12.35□□□□□ -0.43
VIM-201ENST00000224237 TMEM238C9JI98 176 aa12.34□□□□□ -0.43
VIM-201ENST00000224237 K7EP34 96 aa12.34□□□□□ -0.43
VIM-201ENST00000224237 IGHV3-30P01768 117 aa12.34□□□□□ -0.43
VIM-201ENST00000224237 IGHV3-33P01772 117 aa12.34□□□□□ -0.43
VIM-201ENST00000224237 IGHV3-30-5P0DP03 117 aa12.34□□□□□ -0.43
VIM-201ENST00000224237 CD164L2Q6UWJ8 174 aa12.34□□□□□ -0.43
VIM-201ENST00000224237 C5orf38Q86SI9 138 aa12.34□□□□□ -0.43
VIM-201ENST00000224237 K7ERJ3 54 aa12.34□□□□□ -0.43
VIM-201ENST00000224237 LINC01561Q8N1V8 128 aa12.34□□□□□ -0.43
VIM-201ENST00000224237 CHCHD10Q8WYQ3 142 aaPredicted RBP12.34□□□□□ -0.43
VIM-201ENST00000224237 NAA38Q9BRA0 125 aaKnown RBP12.33□□□□□ -0.44
VIM-201ENST00000224237 IGLL5B9A064 214 aa12.32□□□□□ -0.44
VIM-201ENST00000224237 CRPP02741 224 aa12.32□□□□□ -0.44
VIM-201ENST00000224237 COX7B2Q8TF08 81 aa12.32□□□□□ -0.44
VIM-201ENST00000224237 Q9H8V8 135 aa12.32□□□□□ -0.44
VIM-201ENST00000224237 IGLV10-54A0A075B6I4 117 aa12.31□□□□□ -0.44
VIM-201ENST00000224237 SPCS1Q9Y6A9 102 aa12.31□□□□□ -0.44
VIM-201ENST00000224237 LINC01556Q5JQF7 62 aa12.31□□□□□ -0.44
VIM-201ENST00000224237 ENHOQ6UWT2 76 aa12.3□□□□□ -0.44
VIM-201ENST00000224237 ZNF625Q96I27 306 aaPredicted RBP12.3□□□□□ -0.44
VIM-201ENST00000224237 COX7A2LO14548 114 aa12.29□□□□□ -0.44
VIM-201ENST00000224237 HERV-K104P63124 156 aa12.29□□□□□ -0.44
VIM-201ENST00000224237 TOMM7Q9P0U1 55 aa12.29□□□□□ -0.44
VIM-201ENST00000224237 TRAV8-4A0A0B4J246 113 aa12.29□□□□□ -0.44
VIM-201ENST00000224237 TIMM17BO60830 172 aa12.29□□□□□ -0.44
VIM-201ENST00000224237 CCL18P55774 89 aa12.29□□□□□ -0.44
VIM-201ENST00000224237 UBE2WQ96B02 151 aa12.29□□□□□ -0.44
VIM-201ENST00000224237 LITAFQ99732 161 aa12.29□□□□□ -0.44
VIM-201ENST00000224237 FOXI1Q12951 378 aa12.27□□□□□ -0.44
VIM-201ENST00000224237 CIRBPQ14011 172 aaKnown RBP12.27□□□□□ -0.44
VIM-201ENST00000224237 MIAQ16674 131 aa12.27□□□□□ -0.44
VIM-201ENST00000224237 SPANXDQ9BXN6 97 aa12.27□□□□□ -0.44
VIM-201ENST00000224237 SPANXCQ9NY87 97 aa12.27□□□□□ -0.44
VIM-201ENST00000224237 DNAH10OSP0CZ25 163 aa12.27□□□□□ -0.45
VIM-201ENST00000224237 SFTA2Q6UW10 78 aa12.27□□□□□ -0.45
VIM-201ENST00000224237 LINC00588Q9Y4M8 146 aa12.27□□□□□ -0.45
VIM-201ENST00000224237 MALP21145 153 aa12.26□□□□□ -0.45
VIM-201ENST00000224237 Q8IZM0 81 aa12.26□□□□□ -0.45
VIM-201ENST00000224237 GAGE12HA6NDE8 117 aa12.25□□□□□ -0.45
VIM-201ENST00000224237 PRSS2P07478 247 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms