RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 IGKV1-39P01597 117 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 IGKV1D-39P04432 117 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 IMMP1LQ96LU5 166 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 ZNF503-AS2A6NEH8 195 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 TMEM14DPA8MWL7 114 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 DEFB113Q30KQ7 82 aa2.6□□□□□ -1.99
SCN1A-221ENST00000641996 TRBV5-4A0A0C4DH59 114 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 E7EQL1 145 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 INSP01308 110 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV3-9P01782 118 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 SLPIP03973 132 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 Q6ZRP5 223 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 COX7B2Q8TF08 81 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 MRPL36Q9P0J6 103 aaKnown RBP2.59□□□□□ -1.99
SCN1A-221ENST00000641996 TRAV10A0A0B4J240 114 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 GGNQ86UU5 652 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 TOMM7Q9P0U1 55 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 IGKV3D-11A0A0A0MRZ8 115 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 TRBV5-3A0A0A0MS03 114 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 ERC2-IT1O76042 136 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV3-30P01768 117 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 IGKV3-11P04433 115 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 IGHV3-30-5P0DP03 117 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 Q86TA4 180 aa2.59□□□□□ -1.99
SCN1A-221ENST00000641996 U3KQK5 164 aa2.59□□□□□ -2
SCN1A-221ENST00000641996 NPPCP23582 126 aa2.59□□□□□ -2
SCN1A-221ENST00000641996 CFPP27918 469 aa2.59□□□□□ -2
SCN1A-221ENST00000641996 ZNF524Q96C55 264 aa2.59□□□□□ -2
SCN1A-221ENST00000641996 HIGD2AQ9BW72 106 aa2.59□□□□□ -2
SCN1A-221ENST00000641996 IGHV3-30-3P0DP02 117 aa2.59□□□□□ -2
SCN1A-221ENST00000641996 Q8N814 137 aa2.59□□□□□ -2
SCN1A-221ENST00000641996 LRRC37A3O60309 1634 aa2.59□□□□□ -2
SCN1A-221ENST00000641996 IGLV3-16A0A075B6K0 115 aa2.59□□□□□ -2
SCN1A-221ENST00000641996 COL3A1P02461 1466 aaPredicted RBP2.59□□□□□ -2
SCN1A-221ENST00000641996 LY6G6EA0A0G2JKS1 128 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 Q8N9L7 120 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 CRIPAKQ8N1N5 446 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 C7orf69Q9H7B7 122 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 TRBV10-1A0A0K0K1A3 114 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 TRBV30A0A0K0K1B3 111 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 LECT2O14960 151 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 IGLV3-19P01714 112 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 LRBAP50851 2863 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 C19orf84I3L1E1 186 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 CLLU1OSQ5K130 101 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 LINC00208Q96KT6 92 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 TCRBV5S1A1TA0A578 114 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 IGLV3-25P01717 112 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 GFRA4Q9GZZ7 299 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 COL2A1P02458 1487 aaPredicted RBP2.58□□□□□ -2
SCN1A-221ENST00000641996 C16orf95Q9H693 158 aa2.58□□□□□ -2
SCN1A-221ENST00000641996 HTN1P15515 57 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 LYPD5Q6UWN5 251 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 IGKV1-6A0A0C4DH72 117 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 Q6ZS46 218 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 CAMK2N2Q96S95 79 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 LINC00846Q9NV44 126 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 FLNCQ14315 2725 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 B4DSR2 109 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 SLIT2O94813 1529 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 NDUFA4O00483 81 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 C11orf71Q6IPW1 123 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 LINC00476Q8WZB0 136 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 ZFHX3Q15911 3703 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 LINC00271P0C7V0 271 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 IGHV3OR16-9A0A0B4J2B5 98 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 MOBPQ13875 183 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 MSMPQ1L6U9 139 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 Q1T7F1 81 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 A8MWP4 228 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 VMO1Q7Z5L0 202 aa2.57□□□□□ -2
SCN1A-221ENST00000641996 TRBV6-5A0A0K0K1A5 114 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 TMEM14CQ9P0S9 112 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 C16orf90A8MZG2 172 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 RPL34P49207 117 aaKnown RBP2.56□□□□□ -2
SCN1A-221ENST00000641996 SSBP3-AS1Q7Z2R9 100 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 C1orf64Q8NEQ6 169 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 LTBP1Q14766 1721 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 CDC42SE1Q9NRR8 79 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 CYP4F30PQ9H0H9 118 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 LHFPL6Q9Y693 200 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 LRP6O75581 1613 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 A0A087WYN8 130 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 CXCL17Q6UXB2 119 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 PIP4P2Q8N4L2 257 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 C8orf17Q9NRJ1 99 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 LTBP4Q8N2S1 1624 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 IGKV3D-15A0A087WSY6 115 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 NDUFB1O75438 58 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 IGKV3-15P01624 115 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 DAZAP2Q15038 168 aaPredicted RBP2.56□□□□□ -2
SCN1A-221ENST00000641996 IGHV4-4A0A075B6R2 117 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 KLK9Q9UKQ9 250 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 MIR22HGQ0VDD5 57 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 KLF14Q8TD94 323 aaPredicted RBP2.56□□□□□ -2
SCN1A-221ENST00000641996 PAPPAQ13219 1627 aa2.56□□□□□ -2
SCN1A-221ENST00000641996 Q6ZQY7 126 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 ZNF702PQ9H963 129 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 PSCAO43653 123 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 ADAMTSL4-AS1Q5T5F5 129 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms