RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ZNRD1Q9P1U0 126 aa3.46□□□□□ -1.86
SCN1A-220ENST00000641603 MED13LQ71F56 2210 aa3.46□□□□□ -1.86
SCN1A-220ENST00000641603 NUP210LQ5VU65 1888 aa3.46□□□□□ -1.86
SCN1A-220ENST00000641603 HCG22E2RYF7 251 aa3.46□□□□□ -1.86
SCN1A-220ENST00000641603 LYNX1G3V0Z9 82 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 LYNX1P0DP58 116 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 CHCHD7Q9BUK0 85 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 PRO0255Q9UI72 69 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 SIRPDQ9H106 197 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 A8MZ25 164 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 RNASE3P12724 160 aaKnown RBP3.45□□□□□ -1.86
SCN1A-220ENST00000641603 C2orf16Q68DN1 1984 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 LY6LH3BQJ8 138 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 IGLV5-39A0A0G2JS06 123 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 LINC01547P58512 204 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-220ENST00000641603 FBXL19-AS1Q494R0 122 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 ATP1A1-AS1Q5TC04 95 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 FAM215AQ9Y5M1 114 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 HCFC1P51610 2035 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 LY6G6EA0A0G2JKS1 128 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 U3KQA8 63 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 TNRC6BQ9UPQ9 1833 aaKnown RBP3.45□□□□□ -1.86
SCN1A-220ENST00000641603 IGLV5-45A0A087WSX0 123 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 Q6ZQY7 126 aa3.45□□□□□ -1.86
SCN1A-220ENST00000641603 SMIM1B2RUZ4 78 aa3.44□□□□□ -1.86
SCN1A-220ENST00000641603 CRIP2P52943 208 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-220ENST00000641603 ELOF1P60002 83 aaKnown RBP3.44□□□□□ -1.86
SCN1A-220ENST00000641603 C6orf99Q4VX62 202 aa3.44□□□□□ -1.86
SCN1A-220ENST00000641603 E7EUB6 86 aa3.44□□□□□ -1.86
SCN1A-220ENST00000641603 CCL18P55774 89 aa3.44□□□□□ -1.86
SCN1A-220ENST00000641603 C14orf177Q52M58 125 aa3.44□□□□□ -1.86
SCN1A-220ENST00000641603 USF3Q68DE3 2245 aa3.44□□□□□ -1.86
SCN1A-220ENST00000641603 MED13Q9UHV7 2174 aa3.44□□□□□ -1.86
SCN1A-220ENST00000641603 ZNF73O43830 326 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-220ENST00000641603 GYPEP15421 78 aa3.44□□□□□ -1.86
SCN1A-220ENST00000641603 SPRY2O43597 315 aa3.44□□□□□ -1.86
SCN1A-220ENST00000641603 ADAMTS9Q9P2N4 1935 aa3.44□□□□□ -1.86
SCN1A-220ENST00000641603 WNK1Q9H4A3 2382 aa3.44□□□□□ -1.86
SCN1A-220ENST00000641603 RPL37AP8A6NKH3 93 aa3.44□□□□□ -1.86
SCN1A-220ENST00000641603 ATP11AUNQ6ZP68 121 aa3.43□□□□□ -1.86
SCN1A-220ENST00000641603 NOP10Q9NPE3 64 aaKnown RBP3.43□□□□□ -1.86
SCN1A-220ENST00000641603 TRBV6-8A0A0A6YYG3 113 aa3.43□□□□□ -1.86
SCN1A-220ENST00000641603 LINC00208Q96KT6 92 aa3.43□□□□□ -1.86
SCN1A-220ENST00000641603 HTN3P15516 51 aa3.43□□□□□ -1.86
SCN1A-220ENST00000641603 B9D2Q9BPU9 175 aa3.43□□□□□ -1.86
SCN1A-220ENST00000641603 SORL1Q92673 2214 aa3.43□□□□□ -1.86
SCN1A-220ENST00000641603 C4orf3Q8WVX3 66 aa3.43□□□□□ -1.86
SCN1A-220ENST00000641603 ATG2AQ2TAZ0 1938 aa3.43□□□□□ -1.86
SCN1A-220ENST00000641603 PRR15Q8IV56 129 aa3.43□□□□□ -1.86
SCN1A-220ENST00000641603 LINC00846Q9NV44 126 aa3.43□□□□□ -1.86
SCN1A-220ENST00000641603 SPART-AS1P0CW21 52 aa3.43□□□□□ -1.86
SCN1A-220ENST00000641603 DEFB104AQ8WTQ1 72 aa3.43□□□□□ -1.86
SCN1A-220ENST00000641603 ZNF706Q9Y5V0 76 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-220ENST00000641603 A0A087WVE0 104 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 CHCHD10Q8WYQ3 142 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-220ENST00000641603 SMAD5-AS1Q9Y6J3 95 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 C4orf26Q17RF5 130 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 PLCE1Q9P212 2302 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 TSPEAR-AS2P59090 65 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 DAZAP2Q15038 168 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-220ENST00000641603 TANC2Q9HCD6 1990 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 PSCAO43653 123 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 LINC00482Q8N8I6 264 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 C11orf21Q9P2W6 132 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 MUC6Q6W4X9 2439 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 REG3AQ06141 175 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 EGFEM1PQ0D2K5 195 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 TP53AIP1Q9HCN2 124 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 PRM2P04554 102 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 DEFB112Q30KQ8 113 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 LINC00575Q6W349 94 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 SPG11Q96JI7 2443 aa3.42□□□□□ -1.86
SCN1A-220ENST00000641603 KIAA1549LQ6ZVL6 1849 aa3.41□□□□□ -1.86
SCN1A-220ENST00000641603 IGKV4-1P06312 121 aa3.41□□□□□ -1.86
SCN1A-220ENST00000641603 LINC00242Q5T6M2 205 aa3.41□□□□□ -1.86
SCN1A-220ENST00000641603 Q6ZVQ6 151 aa3.41□□□□□ -1.86
SCN1A-220ENST00000641603 BRD3OSQ6XYD6 125 aa3.41□□□□□ -1.86
SCN1A-220ENST00000641603 CDC42SE2Q9NRR3 84 aa3.41□□□□□ -1.86
SCN1A-220ENST00000641603 A6NDX4 124 aa3.41□□□□□ -1.86
SCN1A-220ENST00000641603 KTN1-AS1Q86SY8 53 aa3.41□□□□□ -1.86
SCN1A-220ENST00000641603 PRB4P10163 310 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-220ENST00000641603 IGHV4-28A0A0C4DH34 117 aa3.41□□□□□ -1.86
SCN1A-220ENST00000641603 CLPSL1A2RUU4 121 aa3.41□□□□□ -1.86
SCN1A-220ENST00000641603 SERTAD4-AS1Q5TG53 156 aa3.41□□□□□ -1.86
SCN1A-220ENST00000641603 MED12LQ86YW9 2145 aa3.4□□□□□ -1.86
SCN1A-220ENST00000641603 DEFB105AQ8NG35 78 aa3.4□□□□□ -1.86
SCN1A-220ENST00000641603 RETNLBQ9BQ08 111 aa3.4□□□□□ -1.86
SCN1A-220ENST00000641603 H0Y9J4 135 aa3.4□□□□□ -1.86
SCN1A-220ENST00000641603 C8orf87E5RJ46 101 aa3.4□□□□□ -1.87
SCN1A-220ENST00000641603 PRB3Q04118 309 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-220ENST00000641603 ADAMTSL4-AS1Q5T5F5 129 aa3.4□□□□□ -1.87
SCN1A-220ENST00000641603 PTPRQQ9UMZ3 2332 aa3.4□□□□□ -1.87
SCN1A-220ENST00000641603 PLXNB1O43157 2135 aa3.4□□□□□ -1.87
SCN1A-220ENST00000641603 MAP6D1Q9H9H5 199 aa3.4□□□□□ -1.87
SCN1A-220ENST00000641603 EML5Q05BV3 1969 aa3.39□□□□□ -1.87
SCN1A-220ENST00000641603 A0A1B0GUV1 79 aa3.39□□□□□ -1.87
SCN1A-220ENST00000641603 SLPIP03973 132 aa3.39□□□□□ -1.87
SCN1A-220ENST00000641603 SOSTDC1Q6X4U4 206 aa3.39□□□□□ -1.87
SCN1A-220ENST00000641603 PIEZO1Q92508 2521 aa3.39□□□□□ -1.87
SCN1A-220ENST00000641603 HILS1P60008 231 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms