RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 MUC4Q99102 2169 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 TNRC6AQ8NDV7 1962 aaKnown RBP0.94□□□□□ -2.26
CD44-239ENST00000639002 PTPRMP28827 1452 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 RGPD3A6NKT7 1758 aaPredicted RBP0.94□□□□□ -2.26
CD44-239ENST00000639002 DLEC1Q9Y238 1755 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 TRBV6-7A0A0A0MS04 114 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 RBAKDNA6NC62 111 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 CRYM-AS1A6NIL9 109 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 HCG22E2RYF7 251 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 ATOX1O00244 68 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 INE1O15225 51 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 NDUFC1O43677 76 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 SIX6O95475 246 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 RNASE3P12724 160 aaKnown RBP0.94□□□□□ -2.26
CD44-239ENST00000639002 PDE6GP18545 87 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 ASIPP42127 132 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 C10orf128Q5T292 105 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 GDF5OSQ5U4N7 250 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 C9orf62Q8N4C0 152 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 DEFB119Q8N690 84 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 BET1LQ9NYM9 111 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 UQCR10Q9UDW1 63 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 COL12A1Q99715 3063 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 CLTCQ00610 1675 aaKnown RBP0.94□□□□□ -2.26
CD44-239ENST00000639002 RREB1Q92766 1687 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 CASP8AP2Q9UKL3 1982 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 FREM3P0C091 2139 aa0.94□□□□□ -2.26
CD44-239ENST00000639002 PPLO60437 1756 aa0.93□□□□□ -2.26
CD44-239ENST00000639002 LRRC37A3O60309 1634 aa0.93□□□□□ -2.26
CD44-239ENST00000639002 SHANK2Q9UPX8 1470 aa0.93□□□□□ -2.26
CD44-239ENST00000639002 TRBV7-1A0A0A6YYK4 115 aa0.93□□□□□ -2.26
CD44-239ENST00000639002 M0R2N4 97 aa0.93□□□□□ -2.26
CD44-239ENST00000639002 TFF1P04155 84 aa0.93□□□□□ -2.26
CD44-239ENST00000639002 RPL37AP61513 92 aaKnown RBP0.93□□□□□ -2.26
CD44-239ENST00000639002 SSBP1Q04837 148 aaKnown RBP0.93□□□□□ -2.26
CD44-239ENST00000639002 NUMA1Q14980 2115 aa0.93□□□□□ -2.26
CD44-239ENST00000639002 ZNF563Q8TA94 476 aa0.93□□□□□ -2.26
CD44-239ENST00000639002 C10orf82Q8WW14 230 aa0.93□□□□□ -2.26
CD44-239ENST00000639002 LIMD2Q9BT23 127 aa0.93□□□□□ -2.26
CD44-239ENST00000639002 AFDNP55196 1824 aaKnown RBP0.93□□□□□ -2.26
CD44-239ENST00000639002 PSME4Q14997 1843 aa0.93□□□□□ -2.26
CD44-239ENST00000639002 SBF2Q86WG5 1849 aa0.93□□□□□ -2.26
CD44-239ENST00000639002 PLEKHH2Q8IVE3 1493 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 GBF1Q92538 1859 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 OTOGQ6ZRI0 2925 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 MARF1Q9Y4F3 1742 aaKnown RBP0.92□□□□□ -2.26
CD44-239ENST00000639002 EXPH5Q8NEV8 1989 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 LAMC3Q9Y6N6 1575 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 TNRC6BQ9UPQ9 1833 aaKnown RBP0.92□□□□□ -2.26
CD44-239ENST00000639002 MYOFQ9NZM1 2061 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 RP1P56715 2156 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 IGKV3-7A0A075B6H7 116 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 IGKV2-40A0A087WW87 121 aaPredicted RBP0.92□□□□□ -2.26
CD44-239ENST00000639002 UQCRHLA0A096LP55 91 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 IGKV3D-7A0A0C4DH55 119 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 IGKV3OR2-268A0A0C4DH90 116 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 LOC285095A0A1B0GVY8 99 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 IGKV2D-40P01614 121 aaPredicted RBP0.92□□□□□ -2.26
CD44-239ENST00000639002 IGLV3-1P01715 115 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 MT-ATP8P03928 68 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 COX6CP09669 75 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 IGLC1P0CG04 106 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 FAUP35544 74 aaKnown RBP0.92□□□□□ -2.26
CD44-239ENST00000639002 ELOF1P60002 83 aaKnown RBP0.92□□□□□ -2.26
CD44-239ENST00000639002 SEC11AP67812 179 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 Q0VG73 95 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 LCN9Q8WX39 176 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 ODF3Q96PU9 254 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 S100A13Q99584 98 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 MANBALQ9NQG1 85 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 LINC00312Q9Y6C7 94 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 ADGRB3O60242 1522 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 ARHGEF12Q9NZN5 1544 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 SHROOM2Q13796 1616 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 ZGRF1Q86YA3 2104 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 VPS13AQ96RL7 3174 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 MDC1Q14676 2089 aaKnown RBP0.92□□□□□ -2.26
CD44-239ENST00000639002 ARFGEF1Q9Y6D6 1849 aa0.92□□□□□ -2.26
CD44-239ENST00000639002 ABCC5O15440 1437 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 CASKIN1Q8WXD9 1431 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 UACAQ9BZF9 1416 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 LOC285556D6RIA3 1793 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 HMCN2Q8NDA2 5059 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 PLXNA1Q9UIW2 1896 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 TRBV7-3A0A075B6L6 115 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 LOC110117498A0A087WWA1 95 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 hADV29S1A0JD25 119 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 FXYD1O00168 92 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 SFT2D2O95562 160 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 TRAPPC2P0DI81 140 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 TRAPPC2BP0DI82 140 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 UBE2D1P51668 147 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 SMIM11AP58511 58 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 PEA15Q15121 130 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 SPRNQ5BIV9 151 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 PYY3Q5JQD4 70 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 C6orf52Q5T4I8 152 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 XAF1Q6GPH4 301 aa0.91□□□□□ -2.26
CD44-239ENST00000639002 Q6ZRN7 208 aaPredicted RBP0.91□□□□□ -2.26
CD44-239ENST00000639002 C20orf197Q8N268 126 aa0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms