RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 CRLF1O75462 422 aa14.53□□□□□ -0.08
SYNGAP1-227ENST00000638142 C2orf82Q6UX34 121 aa14.53□□□□□ -0.08
SYNGAP1-227ENST00000638142 NDUFV3P56181 108 aaKnown RBP14.52□□□□□ -0.08
SYNGAP1-227ENST00000638142 H7C423 109 aa14.52□□□□□ -0.09
SYNGAP1-227ENST00000638142 USP9YO00507 2555 aaPredicted RBP14.51□□□□□ -0.09
SYNGAP1-227ENST00000638142 NPC2P61916 151 aa14.51□□□□□ -0.09
SYNGAP1-227ENST00000638142 DEFB114Q30KQ6 69 aa14.51□□□□□ -0.09
SYNGAP1-227ENST00000638142 DGAT2L7PQ6IED9 249 aa14.51□□□□□ -0.09
SYNGAP1-227ENST00000638142 TMEM101Q96IK0 257 aa14.51□□□□□ -0.09
SYNGAP1-227ENST00000638142 CIRBPQ14011 172 aaKnown RBP14.49□□□□□ -0.09
SYNGAP1-227ENST00000638142 ANKRD17O75179 2603 aaKnown RBP14.49□□□□□ -0.09
SYNGAP1-227ENST00000638142 HERVK_113P63121 156 aa14.49□□□□□ -0.09
SYNGAP1-227ENST00000638142 KHDC1LQ5JSQ8 128 aa14.49□□□□□ -0.09
SYNGAP1-227ENST00000638142 LST1O00453 97 aa14.48□□□□□ -0.09
SYNGAP1-227ENST00000638142 Q6ZSV7 163 aa14.48□□□□□ -0.09
SYNGAP1-227ENST00000638142 C15orf53Q8NAA6 179 aa14.48□□□□□ -0.09
SYNGAP1-227ENST00000638142 IGHV3OR16-12A0A075B7B8 117 aa14.48□□□□□ -0.09
SYNGAP1-227ENST00000638142 IGLV5-39A0A0G2JS06 123 aa14.48□□□□□ -0.09
SYNGAP1-227ENST00000638142 MRPL23Q16540 153 aaKnown RBP14.48□□□□□ -0.09
SYNGAP1-227ENST00000638142 TTC32Q5I0X7 151 aa14.48□□□□□ -0.09
SYNGAP1-227ENST00000638142 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.48□□□□□ -0.09
SYNGAP1-227ENST00000638142 DEFB121Q5J5C9 76 aa14.47□□□□□ -0.09
SYNGAP1-227ENST00000638142 FAM19A3Q7Z5A8 133 aa14.46□□□□□ -0.09
SYNGAP1-227ENST00000638142 ZANQ9Y493 2812 aa14.46□□□□□ -0.09
SYNGAP1-227ENST00000638142 FAM240AA0A1B0GVK7 77 aa14.46□□□□□ -0.1
SYNGAP1-227ENST00000638142 COX6A2Q02221 97 aa14.46□□□□□ -0.1
SYNGAP1-227ENST00000638142 IL17DQ8TAD2 202 aa14.46□□□□□ -0.1
SYNGAP1-227ENST00000638142 CLEC2BQ92478 149 aa14.46□□□□□ -0.1
SYNGAP1-227ENST00000638142 XCL2Q9UBD3 114 aa14.46□□□□□ -0.1
SYNGAP1-227ENST00000638142 LINC00242Q5T6M2 205 aa14.45□□□□□ -0.1
SYNGAP1-227ENST00000638142 DAND5Q8N907 189 aa14.45□□□□□ -0.1
SYNGAP1-227ENST00000638142 BBC3Q96PG8 261 aaPredicted RBP14.45□□□□□ -0.1
SYNGAP1-227ENST00000638142 CSDC2Q9Y534 153 aaKnown RBP14.44□□□□□ -0.1
SYNGAP1-227ENST00000638142 ODF3L2Q3SX64 289 aa14.44□□□□□ -0.1
SYNGAP1-227ENST00000638142 Q9H8V8 135 aa14.44□□□□□ -0.1
SYNGAP1-227ENST00000638142 LINC00308Q8TCZ7 52 aa14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 CR1P17927 2039 aa14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 CSMD2Q7Z408 3487 aa14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 TRBV10-1A0A0K0K1A3 114 aa14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 GAGE12JA6NER3 117 aa14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 B5MCH6 92 aa14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 GAGE7O76087 117 aa14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 GAGE12FP0CL80 117 aa14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 GAGE12GP0CL81 117 aa14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 GAGE12IP0CL82 117 aa14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 GAGE4Q13068 117 aa14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 COPS9Q8WXC6 57 aa14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 SS18L2Q9UHA2 77 aa14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 MXRA5Q9NR99 2828 aa14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 FASNP49327 2511 aaKnown RBP14.43□□□□□ -0.1
SYNGAP1-227ENST00000638142 TRAV25A0A0B4J276 109 aa14.42□□□□□ -0.1
SYNGAP1-227ENST00000638142 RPL36AP83881 106 aaKnown RBP14.42□□□□□ -0.1
SYNGAP1-227ENST00000638142 STHQ8IWL8 128 aa14.42□□□□□ -0.1
SYNGAP1-227ENST00000638142 C1orf158Q8N1D5 194 aa14.42□□□□□ -0.1
SYNGAP1-227ENST00000638142 RPL36ALQ969Q0 106 aaKnown RBP14.42□□□□□ -0.1
SYNGAP1-227ENST00000638142 TRGV1A0A0A0MS02 117 aa14.42□□□□□ -0.1
SYNGAP1-227ENST00000638142 CITED2Q99967 270 aaPredicted RBP14.42□□□□□ -0.1
SYNGAP1-227ENST00000638142 LINC00694P0DN24 101 aa14.41□□□□□ -0.1
SYNGAP1-227ENST00000638142 DAZ2Q13117 558 aaKnown RBP14.41□□□□□ -0.1
SYNGAP1-227ENST00000638142 DAZ4Q86SG3 579 aaKnown RBP14.41□□□□□ -0.1
SYNGAP1-227ENST00000638142 DAZ3Q9NR90 486 aaKnown RBP14.41□□□□□ -0.1
SYNGAP1-227ENST00000638142 ZNF462Q96JM2 2506 aa14.41□□□□□ -0.1
SYNGAP1-227ENST00000638142 UTP20O75691 2785 aaKnown RBP14.41□□□□□ -0.1
SYNGAP1-227ENST00000638142 SMIM1B2RUZ4 78 aa14.4□□□□□ -0.1
SYNGAP1-227ENST00000638142 K7EQD1 137 aa14.4□□□□□ -0.1
SYNGAP1-227ENST00000638142 PRB1P04280 392 aa14.4□□□□□ -0.1
SYNGAP1-227ENST00000638142 MYO18BQ8IUG5 2567 aa14.39□□□□□ -0.11
SYNGAP1-227ENST00000638142 FBN2P35556 2912 aa14.38□□□□□ -0.11
SYNGAP1-227ENST00000638142 POLQO75417 2590 aa14.38□□□□□ -0.11
SYNGAP1-227ENST00000638142 CCDC179H3BU77 68 aa14.38□□□□□ -0.11
SYNGAP1-227ENST00000638142 NTM-AS1Q6ZSK4 140 aa14.37□□□□□ -0.11
SYNGAP1-227ENST00000638142 TRAV13-1A0A0B4J241 112 aa14.37□□□□□ -0.11
SYNGAP1-227ENST00000638142 TMEM86BQ8N661 226 aa14.36□□□□□ -0.11
SYNGAP1-227ENST00000638142 ZNF625Q96I27 306 aaPredicted RBP14.36□□□□□ -0.11
SYNGAP1-227ENST00000638142 CDC42SE2Q9NRR3 84 aa14.36□□□□□ -0.11
SYNGAP1-227ENST00000638142 NDUFA7O95182 113 aa14.36□□□□□ -0.11
SYNGAP1-227ENST00000638142 DEFB113Q30KQ7 82 aa14.36□□□□□ -0.11
SYNGAP1-227ENST00000638142 Q6ZTI0 123 aa14.36□□□□□ -0.11
SYNGAP1-227ENST00000638142 COX7A2LO14548 114 aa14.35□□□□□ -0.11
SYNGAP1-227ENST00000638142 HERV-K104P63124 156 aa14.35□□□□□ -0.11
SYNGAP1-227ENST00000638142 PRIMA1Q86XR5 153 aa14.35□□□□□ -0.11
SYNGAP1-227ENST00000638142 LRRC75A-AS1Q8N1F1 130 aa14.35□□□□□ -0.11
SYNGAP1-227ENST00000638142 HIST2H2BDQ6DRA6 164 aa14.35□□□□□ -0.11
SYNGAP1-227ENST00000638142 HELZ2Q9BYK8 2649 aaKnown RBP14.34□□□□□ -0.11
SYNGAP1-227ENST00000638142 F5H768 121 aa14.34□□□□□ -0.11
SYNGAP1-227ENST00000638142 SOSTDC1Q6X4U4 206 aa14.34□□□□□ -0.11
SYNGAP1-227ENST00000638142 PPDPFQ9H3Y8 114 aa14.34□□□□□ -0.11
SYNGAP1-227ENST00000638142 GCN1Q92616 2671 aaKnown RBP14.34□□□□□ -0.11
SYNGAP1-227ENST00000638142 MYO9AB2RTY4 2548 aa14.34□□□□□ -0.11
SYNGAP1-227ENST00000638142 MEIG1Q5JSS6 88 aa14.34□□□□□ -0.11
SYNGAP1-227ENST00000638142 SHISA2Q6UWI4 295 aa14.34□□□□□ -0.11
SYNGAP1-227ENST00000638142 TRBV7-7A0A0K0K1E9 115 aa14.33□□□□□ -0.12
SYNGAP1-227ENST00000638142 A0A0U1RRA0 63 aa14.33□□□□□ -0.12
SYNGAP1-227ENST00000638142 KRTAP10-9P60411 292 aa14.33□□□□□ -0.12
SYNGAP1-227ENST00000638142 Q96MF0 132 aa14.32□□□□□ -0.12
SYNGAP1-227ENST00000638142 ACYP1P07311 99 aa14.31□□□□□ -0.12
SYNGAP1-227ENST00000638142 TMEM243Q9BU79 118 aa14.3□□□□□ -0.12
SYNGAP1-227ENST00000638142 CCL24O00175 119 aa14.3□□□□□ -0.12
SYNGAP1-227ENST00000638142 UBE2L6O14933 153 aa14.3□□□□□ -0.12
SYNGAP1-227ENST00000638142 NOP10Q9NPE3 64 aaKnown RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms