RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 LGALS3P17931 250 aaKnown RBP13.1□□□□□ -0.31
CLN3-263ENST00000637871 GTF2H5Q6ZYL4 71 aa13.1□□□□□ -0.31
CLN3-263ENST00000637871 KIR2DL5BQ8NHK3 375 aa13.1□□□□□ -0.31
CLN3-263ENST00000637871 SPANXB1Q9NS25 103 aaPredicted RBP13.1□□□□□ -0.31
CLN3-263ENST00000637871 H7C423 109 aa13.09□□□□□ -0.31
CLN3-263ENST00000637871 J3QQQ9 107 aa13.09□□□□□ -0.31
CLN3-263ENST00000637871 ZNF22P17026 224 aaPredicted RBP13.09□□□□□ -0.31
CLN3-263ENST00000637871 FXYD2P54710 66 aa13.09□□□□□ -0.31
CLN3-263ENST00000637871 UBE2D3P61077 147 aa13.09□□□□□ -0.31
CLN3-263ENST00000637871 UBE2D2P62837 147 aa13.09□□□□□ -0.31
CLN3-263ENST00000637871 OPRPNQ99935 248 aaPredicted RBP13.09□□□□□ -0.31
CLN3-263ENST00000637871 DGAT2L7PQ6IED9 249 aa13.08□□□□□ -0.32
CLN3-263ENST00000637871 Q6ZVH6 145 aa13.08□□□□□ -0.32
CLN3-263ENST00000637871 FBN3Q75N90 2809 aa13.07□□□□□ -0.32
CLN3-263ENST00000637871 EMP1P54849 157 aa13.07□□□□□ -0.32
CLN3-263ENST00000637871 SLC25A29Q8N8R3 303 aa13.07□□□□□ -0.32
CLN3-263ENST00000637871 PHLDA1Q8WV24 401 aaPredicted RBP13.07□□□□□ -0.32
CLN3-263ENST00000637871 A0A0J9YXV3 536 aa13.06□□□□□ -0.32
CLN3-263ENST00000637871 CCL25O15444 150 aa13.06□□□□□ -0.32
CLN3-263ENST00000637871 TIRAPP58753 221 aa13.06□□□□□ -0.32
CLN3-263ENST00000637871 FAM104AQ969W3 186 aa13.06□□□□□ -0.32
CLN3-263ENST00000637871 Q9UF83 564 aa13.06□□□□□ -0.32
CLN3-263ENST00000637871 A0A1B0GWB2 263 aa13.06□□□□□ -0.32
CLN3-263ENST00000637871 GAGE12BA1L429 117 aa13.06□□□□□ -0.32
CLN3-263ENST00000637871 GAGE7O76087 117 aa13.06□□□□□ -0.32
CLN3-263ENST00000637871 GAGE12FP0CL80 117 aa13.06□□□□□ -0.32
CLN3-263ENST00000637871 GAGE12GP0CL81 117 aa13.06□□□□□ -0.32
CLN3-263ENST00000637871 GAGE12IP0CL82 117 aa13.06□□□□□ -0.32
CLN3-263ENST00000637871 AMMECR1LQ6DCA0 310 aa13.06□□□□□ -0.32
CLN3-263ENST00000637871 K7EIL1 84 aa13.05□□□□□ -0.32
CLN3-263ENST00000637871 SRSF9Q13242 221 aaKnown RBP eCLIP13.05□□□□□ -0.32
CLN3-263ENST00000637871 LINC00612Q8N6U2 182 aa13.05□□□□□ -0.32
CLN3-263ENST00000637871 TRGV4A0A0C4DH28 118 aa13.04□□□□□ -0.32
CLN3-263ENST00000637871 IGHV3-38A0A0C4DH36 116 aa13.04□□□□□ -0.32
CLN3-263ENST00000637871 A0A0J9YY99 117 aa13.04□□□□□ -0.32
CLN3-263ENST00000637871 GAGE10A6NGK3 116 aa13.04□□□□□ -0.32
CLN3-263ENST00000637871 APOC4P55056 127 aa13.04□□□□□ -0.32
CLN3-263ENST00000637871 OR5A1Q8NGJ0 315 aa13.04□□□□□ -0.32
CLN3-263ENST00000637871 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.03□□□□□ -0.32
CLN3-263ENST00000637871 IGKV2-29A2NJV5 120 aaPredicted RBP13.03□□□□□ -0.32
CLN3-263ENST00000637871 H3BUT2 72 aa13.03□□□□□ -0.32
CLN3-263ENST00000637871 FAM19A3Q7Z5A8 133 aa13.03□□□□□ -0.32
CLN3-263ENST00000637871 NHP2Q9NX24 153 aaKnown RBP13.03□□□□□ -0.32
CLN3-263ENST00000637871 FABP2P12104 132 aa13.02□□□□□ -0.32
CLN3-263ENST00000637871 C12orf74Q32Q52 190 aa13.02□□□□□ -0.32
CLN3-263ENST00000637871 GEMIN7Q9H840 131 aaKnown RBP13.02□□□□□ -0.32
CLN3-263ENST00000637871 IGHV1-58A0A0C4DH39 117 aa13.02□□□□□ -0.33
CLN3-263ENST00000637871 A0A1W2PPM0 123 aa13.02□□□□□ -0.33
CLN3-263ENST00000637871 UBE2D1P51668 147 aa13.02□□□□□ -0.33
CLN3-263ENST00000637871 SBSPONQ8IVN8 264 aa13.02□□□□□ -0.33
CLN3-263ENST00000637871 PRKDCP78527 4128 aaKnown RBP13.02□□□□□ -0.33
CLN3-263ENST00000637871 GAGE12JA6NER3 117 aa13.01□□□□□ -0.33
CLN3-263ENST00000637871 GAGE4Q13068 117 aa13.01□□□□□ -0.33
CLN3-263ENST00000637871 GAGE5Q13069 117 aa13.01□□□□□ -0.33
CLN3-263ENST00000637871 GAGE13Q4V321 117 aa13.01□□□□□ -0.33
CLN3-263ENST00000637871 Q6ZUT4 128 aa13.01□□□□□ -0.33
CLN3-263ENST00000637871 TMEM243Q9BU79 118 aa13.01□□□□□ -0.33
CLN3-263ENST00000637871 IGLV5-45A0A087WSX0 123 aa13□□□□□ -0.33
CLN3-263ENST00000637871 LYRM9A8MSI8 78 aa13□□□□□ -0.33
CLN3-263ENST00000637871 HERVK_113P63121 156 aa13□□□□□ -0.33
CLN3-263ENST00000637871 FHL2Q14192 279 aa13□□□□□ -0.33
CLN3-263ENST00000637871 RAB37Q96AX2 223 aa13□□□□□ -0.33
CLN3-263ENST00000637871 K7EP34 96 aa12.99□□□□□ -0.33
CLN3-263ENST00000637871 CEMP1Q6PRD7 247 aaPredicted RBP12.99□□□□□ -0.33
CLN3-263ENST00000637871 TMEM101Q96IK0 257 aa12.99□□□□□ -0.33
CLN3-263ENST00000637871 UBE2L6O14933 153 aa12.99□□□□□ -0.33
CLN3-263ENST00000637871 TSPEAR-AS2P59090 65 aa12.99□□□□□ -0.33
CLN3-263ENST00000637871 MRAPQ8TCY5 172 aa12.99□□□□□ -0.33
CLN3-263ENST00000637871 TMEM238C9JI98 176 aa12.98□□□□□ -0.33
CLN3-263ENST00000637871 IGHV3-30-3P0DP02 117 aa12.98□□□□□ -0.33
CLN3-263ENST00000637871 IGHV4-30-4P0DP06 118 aa12.98□□□□□ -0.33
CLN3-263ENST00000637871 DEFB121Q5J5C9 76 aa12.98□□□□□ -0.33
CLN3-263ENST00000637871 NTM-AS1Q6ZSK4 140 aa12.98□□□□□ -0.33
CLN3-263ENST00000637871 K7EP13 123 aa12.97□□□□□ -0.33
CLN3-263ENST00000637871 VSIG2Q96IQ7 327 aa12.97□□□□□ -0.33
CLN3-263ENST00000637871 X6R8D5 127 aa12.97□□□□□ -0.33
CLN3-263ENST00000637871 IGLL5B9A064 214 aa12.96□□□□□ -0.33
CLN3-263ENST00000637871 LINC00694P0DN24 101 aa12.95□□□□□ -0.34
CLN3-263ENST00000637871 CDC42SE2Q9NRR3 84 aa12.95□□□□□ -0.34
CLN3-263ENST00000637871 SPCS1Q9Y6A9 102 aa12.95□□□□□ -0.34
CLN3-263ENST00000637871 IGHV3-30P01768 117 aa12.95□□□□□ -0.34
CLN3-263ENST00000637871 IGHV3-30-5P0DP03 117 aa12.95□□□□□ -0.34
CLN3-263ENST00000637871 RPL24P83731 157 aaKnown RBP12.94□□□□□ -0.34
CLN3-263ENST00000637871 TIMM17BO60830 172 aa12.93□□□□□ -0.34
CLN3-263ENST00000637871 LYRM7Q5U5X0 104 aa12.93□□□□□ -0.34
CLN3-263ENST00000637871 TRBV6-8A0A0A6YYG3 113 aa12.92□□□□□ -0.34
CLN3-263ENST00000637871 ZFAND6Q6FIF0 208 aa12.92□□□□□ -0.34
CLN3-263ENST00000637871 NDUFA12Q9UI09 145 aa12.92□□□□□ -0.34
CLN3-263ENST00000637871 PRO0255Q9UI72 69 aa12.92□□□□□ -0.34
CLN3-263ENST00000637871 A0A0J9YXY3 114 aa12.91□□□□□ -0.34
CLN3-263ENST00000637871 K7ERJ3 54 aa12.91□□□□□ -0.34
CLN3-263ENST00000637871 MIFP14174 115 aa12.91□□□□□ -0.34
CLN3-263ENST00000637871 RNASE13Q5GAN3 156 aaKnown RBP12.91□□□□□ -0.34
CLN3-263ENST00000637871 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.91□□□□□ -0.34
CLN3-263ENST00000637871 LINC00242Q5T6M2 205 aa12.91□□□□□ -0.34
CLN3-263ENST00000637871 DEFB130BP0DP73 79 aa12.9□□□□□ -0.34
CLN3-263ENST00000637871 DEFB130AP0DP74 79 aa12.9□□□□□ -0.34
CLN3-263ENST00000637871 RNF183Q96D59 192 aa12.9□□□□□ -0.34
CLN3-263ENST00000637871 CDKN2A-AS1Q9UH64 79 aa12.9□□□□□ -0.34
CLN3-263ENST00000637871 IGLV5-39A0A0G2JS06 123 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 141.9 ms