RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 Q6ZUT4 128 aa13.09□□□□□ -0.31
CLN3-258ENST00000637184 FAM104AQ969W3 186 aa13.09□□□□□ -0.31
CLN3-258ENST00000637184 PMCHL2Q9BQD1 86 aa13.08□□□□□ -0.32
CLN3-258ENST00000637184 A0A087WX48 190 aa13.07□□□□□ -0.32
CLN3-258ENST00000637184 TRAV8-6A0A0B4J262 113 aa13.07□□□□□ -0.32
CLN3-258ENST00000637184 NUPR2A6NF83 97 aa13.07□□□□□ -0.32
CLN3-258ENST00000637184 PRSS29PA6NIE9 313 aa13.07□□□□□ -0.32
CLN3-258ENST00000637184 ODF1Q14990 250 aa13.07□□□□□ -0.32
CLN3-258ENST00000637184 ZC2HC1BQ5TFG8 222 aa13.07□□□□□ -0.32
CLN3-258ENST00000637184 TEX43Q6ZNM6 134 aa13.07□□□□□ -0.32
CLN3-258ENST00000637184 CST9LQ9H4G1 147 aa13.07□□□□□ -0.32
CLN3-258ENST00000637184 RNASE13Q5GAN3 156 aaKnown RBP13.07□□□□□ -0.32
CLN3-258ENST00000637184 AMELXQ99217 191 aa13.07□□□□□ -0.32
CLN3-258ENST00000637184 CDC42SE2Q9NRR3 84 aa13.07□□□□□ -0.32
CLN3-258ENST00000637184 PKIAP61925 76 aa13.06□□□□□ -0.32
CLN3-258ENST00000637184 ZNF664Q8N3J9 261 aa13.06□□□□□ -0.32
CLN3-258ENST00000637184 CHTOPQ9Y3Y2 248 aaKnown RBP13.06□□□□□ -0.32
CLN3-258ENST00000637184 A0A1B0GUV1 79 aa13.05□□□□□ -0.32
CLN3-258ENST00000637184 MPV17L2Q567V2 206 aa13.05□□□□□ -0.32
CLN3-258ENST00000637184 KLK5Q9Y337 293 aaPredicted RBP13.05□□□□□ -0.32
CLN3-258ENST00000637184 IGLV4-60A0A075B6I1 120 aa13.04□□□□□ -0.32
CLN3-258ENST00000637184 RBX1P62877 108 aa13.04□□□□□ -0.32
CLN3-258ENST00000637184 C2orf88Q9BSF0 95 aa13.04□□□□□ -0.32
CLN3-258ENST00000637184 MRPL35Q9NZE8 188 aaKnown RBP13.04□□□□□ -0.32
CLN3-258ENST00000637184 F8VRH5 84 aa13.04□□□□□ -0.32
CLN3-258ENST00000637184 CCL18P55774 89 aa13.03□□□□□ -0.32
CLN3-258ENST00000637184 ATOH7Q8N100 152 aa13.03□□□□□ -0.32
CLN3-258ENST00000637184 DNAH7Q8WXX0 4024 aa13.02□□□□□ -0.32
CLN3-258ENST00000637184 CDPF1Q6NVV7 123 aa13.02□□□□□ -0.32
CLN3-258ENST00000637184 DPM2O94777 84 aa13.02□□□□□ -0.33
CLN3-258ENST00000637184 WFDC10BQ8IUB3 73 aa13.02□□□□□ -0.33
CLN3-258ENST00000637184 C12orf57Q99622 126 aa13.02□□□□□ -0.33
CLN3-258ENST00000637184 APLNQ9ULZ1 77 aa13.02□□□□□ -0.33
CLN3-258ENST00000637184 IGKCP01834 107 aa13.01□□□□□ -0.33
CLN3-258ENST00000637184 PLNP26678 52 aa13.01□□□□□ -0.33
CLN3-258ENST00000637184 LINC00518Q8N0U6 118 aa13.01□□□□□ -0.33
CLN3-258ENST00000637184 TGP01266 2768 aa13□□□□□ -0.33
CLN3-258ENST00000637184 LINC00588Q9Y4M8 146 aa13□□□□□ -0.33
CLN3-258ENST00000637184 DYNC2H1Q8NCM8 4307 aaKnown RBP13□□□□□ -0.33
CLN3-258ENST00000637184 Q8N3U1 123 aa12.99□□□□□ -0.33
CLN3-258ENST00000637184 MRPS16Q9Y3D3 137 aaKnown RBP12.99□□□□□ -0.33
CLN3-258ENST00000637184 IGLV4-69A0A075B6H9 119 aa12.99□□□□□ -0.33
CLN3-258ENST00000637184 TCTAP57738 103 aa12.99□□□□□ -0.33
CLN3-258ENST00000637184 S100A12P80511 92 aa12.99□□□□□ -0.33
CLN3-258ENST00000637184 A0A0J9YXV3 536 aa12.98□□□□□ -0.33
CLN3-258ENST00000637184 ANGP03950 147 aaKnown RBP12.98□□□□□ -0.33
CLN3-258ENST00000637184 CSMD3Q7Z407 3707 aa12.98□□□□□ -0.33
CLN3-258ENST00000637184 TRAV13-1A0A0B4J241 112 aa12.97□□□□□ -0.33
CLN3-258ENST00000637184 UBE2D1P51668 147 aa12.97□□□□□ -0.33
CLN3-258ENST00000637184 ZFAND6Q6FIF0 208 aa12.97□□□□□ -0.33
CLN3-258ENST00000637184 IGKV3OR2-268A0A0C4DH90 116 aa12.97□□□□□ -0.33
CLN3-258ENST00000637184 IGHV3-30P01768 117 aa12.97□□□□□ -0.33
CLN3-258ENST00000637184 IGHV3-33P01772 117 aa12.97□□□□□ -0.33
CLN3-258ENST00000637184 IGHV3-30-3P0DP02 117 aa12.97□□□□□ -0.33
CLN3-258ENST00000637184 IGHV3-30-5P0DP03 117 aa12.97□□□□□ -0.33
CLN3-258ENST00000637184 VAMP8Q9BV40 100 aa12.97□□□□□ -0.33
CLN3-258ENST00000637184 C11orf86A6NJI1 115 aa12.96□□□□□ -0.34
CLN3-258ENST00000637184 IGLC3P0DOY3 106 aa12.96□□□□□ -0.34
CLN3-258ENST00000637184 NFE4Q86UQ8 179 aa12.96□□□□□ -0.34
CLN3-258ENST00000637184 LINC00269Q8N2A0 174 aa12.96□□□□□ -0.34
CLN3-258ENST00000637184 MUC7Q8TAX7 377 aa12.96□□□□□ -0.34
CLN3-258ENST00000637184 WWC2-AS2Q96NR7 200 aa12.96□□□□□ -0.34
CLN3-258ENST00000637184 CHAC1Q9BUX1 264 aa12.96□□□□□ -0.34
CLN3-258ENST00000637184 TRAV9-2A0A087WT02 112 aa12.95□□□□□ -0.34
CLN3-258ENST00000637184 HSBP1L1C9JCN9 74 aa12.95□□□□□ -0.34
CLN3-258ENST00000637184 hDV102S1A0JD36 115 aa12.94□□□□□ -0.34
CLN3-258ENST00000637184 MAJINQ3KP22 176 aa12.94□□□□□ -0.34
CLN3-258ENST00000637184 CLPSL2Q6UWE3 100 aa12.94□□□□□ -0.34
CLN3-258ENST00000637184 KLK12Q9UKR0 248 aa12.94□□□□□ -0.34
CLN3-258ENST00000637184 TINCRA0A1B0GVN0 87 aa12.94□□□□□ -0.34
CLN3-258ENST00000637184 SEC11AP67812 179 aa12.94□□□□□ -0.34
CLN3-258ENST00000637184 LINC01556Q5JQF7 62 aa12.94□□□□□ -0.34
CLN3-258ENST00000637184 UPK3BQ9BT76 320 aa12.94□□□□□ -0.34
CLN3-258ENST00000637184 GEMIN7Q9H840 131 aaKnown RBP12.94□□□□□ -0.34
CLN3-258ENST00000637184 PAM16Q9Y3D7 125 aa12.94□□□□□ -0.34
CLN3-258ENST00000637184 SIVA1O15304 175 aa12.93□□□□□ -0.34
CLN3-258ENST00000637184 REG3AQ06141 175 aa12.93□□□□□ -0.34
CLN3-258ENST00000637184 TMEM170BQ5T4T1 132 aa12.93□□□□□ -0.34
CLN3-258ENST00000637184 LINC00242Q5T6M2 205 aa12.93□□□□□ -0.34
CLN3-258ENST00000637184 FAM19A3Q7Z5A8 133 aa12.93□□□□□ -0.34
CLN3-258ENST00000637184 DNAH10OSP0CZ25 163 aa12.92□□□□□ -0.34
CLN3-258ENST00000637184 UBE2DNLQ8IWF7 75 aa12.92□□□□□ -0.34
CLN3-258ENST00000637184 STPG4Q8N801 248 aa12.92□□□□□ -0.34
CLN3-258ENST00000637184 LINC00959A0A1B0GUT2 108 aa12.92□□□□□ -0.34
CLN3-258ENST00000637184 HERVK_113P63121 156 aa12.91□□□□□ -0.34
CLN3-258ENST00000637184 SS18Q15532 418 aa12.91□□□□□ -0.34
CLN3-258ENST00000637184 STARD9Q9P2P6 4700 aa12.9□□□□□ -0.34
CLN3-258ENST00000637184 ZNF22P17026 224 aaPredicted RBP12.9□□□□□ -0.34
CLN3-258ENST00000637184 SPATA45Q537H7 98 aa12.9□□□□□ -0.34
CLN3-258ENST00000637184 PRR34Q9NV39 138 aa12.9□□□□□ -0.34
CLN3-258ENST00000637184 CCL25O15444 150 aa12.89□□□□□ -0.35
CLN3-258ENST00000637184 CRPP02741 224 aa12.89□□□□□ -0.35
CLN3-258ENST00000637184 COX6A2Q02221 97 aa12.89□□□□□ -0.35
CLN3-258ENST00000637184 LINC00469Q8N7U9 141 aa12.89□□□□□ -0.35
CLN3-258ENST00000637184 PLECQ15149 4684 aaKnown RBP12.89□□□□□ -0.35
CLN3-258ENST00000637184 Q9H8V8 135 aa12.89□□□□□ -0.35
CLN3-258ENST00000637184 UBE2WQ96B02 151 aa12.88□□□□□ -0.35
CLN3-258ENST00000637184 TENM2Q9NT68 2774 aa12.88□□□□□ -0.35
CLN3-258ENST00000637184 ENHOQ6UWT2 76 aa12.87□□□□□ -0.35
CLN3-258ENST00000637184 IGLV5-45A0A087WSX0 123 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms