RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 MT-ND6P03923 174 aa11.85□□□□□ -0.51
CLN3-247ENST00000636351 REG3AQ06141 175 aa11.85□□□□□ -0.51
CLN3-247ENST00000636351 PGPEP1Q9NXJ5 209 aa11.85□□□□□ -0.51
CLN3-247ENST00000636351 FAT1Q14517 4588 aa11.84□□□□□ -0.51
CLN3-247ENST00000636351 IGKV3OR2-268A0A0C4DH90 116 aa11.84□□□□□ -0.51
CLN3-247ENST00000636351 ZNF25P17030 456 aaPredicted RBP11.84□□□□□ -0.51
CLN3-247ENST00000636351 RAB5AP20339 215 aa11.84□□□□□ -0.51
CLN3-247ENST00000636351 MIAQ16674 131 aa11.84□□□□□ -0.51
CLN3-247ENST00000636351 OR5A1Q8NGJ0 315 aa11.84□□□□□ -0.51
CLN3-247ENST00000636351 A0A087WTM6 91 aa11.83□□□□□ -0.52
CLN3-247ENST00000636351 INAFM2P0DMQ5 153 aa11.83□□□□□ -0.52
CLN3-247ENST00000636351 SMAGPQ0VAQ4 97 aa11.83□□□□□ -0.52
CLN3-247ENST00000636351 FABP9Q0Z7S8 132 aa11.83□□□□□ -0.52
CLN3-247ENST00000636351 TMEM18Q96B42 140 aa11.83□□□□□ -0.52
CLN3-247ENST00000636351 MRPL18Q9H0U6 180 aaKnown RBP11.83□□□□□ -0.52
CLN3-247ENST00000636351 PRR34Q9NV39 138 aa11.83□□□□□ -0.52
CLN3-247ENST00000636351 XGP55808 180 aa11.82□□□□□ -0.52
CLN3-247ENST00000636351 DGAT2L7PQ6IED9 249 aa11.82□□□□□ -0.52
CLN3-247ENST00000636351 CDPF1Q6NVV7 123 aa11.82□□□□□ -0.52
CLN3-247ENST00000636351 IGLV10-54A0A075B6I4 117 aa11.81□□□□□ -0.52
CLN3-247ENST00000636351 LECT2O14960 151 aa11.81□□□□□ -0.52
CLN3-247ENST00000636351 CBLN2Q8IUK8 224 aa11.81□□□□□ -0.52
CLN3-247ENST00000636351 DMBT1Q9UGM3 2413 aaPredicted RBP11.81□□□□□ -0.52
CLN3-247ENST00000636351 Q5VSD8 79 aa11.8□□□□□ -0.52
CLN3-247ENST00000636351 MRPL52Q86TS9 123 aaKnown RBP11.8□□□□□ -0.52
CLN3-247ENST00000636351 SMCO4Q9NRQ5 59 aa11.8□□□□□ -0.52
CLN3-247ENST00000636351 KRTAP10-1P60331 282 aa11.79□□□□□ -0.52
CLN3-247ENST00000636351 Q8N8P6 123 aa11.79□□□□□ -0.52
CLN3-247ENST00000636351 BAALCQ8WXS3 180 aa11.79□□□□□ -0.52
CLN3-247ENST00000636351 NXT2Q9NPJ8 142 aaKnown RBP11.79□□□□□ -0.52
CLN3-247ENST00000636351 TRAPPC1Q9Y5R8 145 aa11.79□□□□□ -0.52
CLN3-247ENST00000636351 TRAV8-4A0A0B4J246 113 aa11.78□□□□□ -0.52
CLN3-247ENST00000636351 LRCOL1A6NCL2 159 aa11.78□□□□□ -0.52
CLN3-247ENST00000636351 PRSS47A8MTI9 375 aa11.78□□□□□ -0.52
CLN3-247ENST00000636351 RPL39P62891 51 aaKnown RBP11.78□□□□□ -0.52
CLN3-247ENST00000636351 UBE2D4Q9Y2X8 147 aa11.78□□□□□ -0.52
CLN3-247ENST00000636351 WFDC2Q14508 124 aa11.77□□□□□ -0.53
CLN3-247ENST00000636351 IFI27P40305 119 aaPredicted RBP11.76□□□□□ -0.53
CLN3-247ENST00000636351 ZNF664Q8N3J9 261 aa11.76□□□□□ -0.53
CLN3-247ENST00000636351 ALKBH7Q9BT30 221 aaPredicted RBP11.76□□□□□ -0.53
CLN3-247ENST00000636351 ORMDL2Q53FV1 153 aa11.75□□□□□ -0.53
CLN3-247ENST00000636351 RNASE13Q5GAN3 156 aaKnown RBP11.75□□□□□ -0.53
CLN3-247ENST00000636351 Q6ZUT4 128 aa11.75□□□□□ -0.53
CLN3-247ENST00000636351 Q8N814 137 aa11.75□□□□□ -0.53
CLN3-247ENST00000636351 PRSS3P2Q8NHM4 247 aa11.75□□□□□ -0.53
CLN3-247ENST00000636351 YPEL4Q96NS1 127 aa11.75□□□□□ -0.53
CLN3-247ENST00000636351 CDC42SE2Q9NRR3 84 aa11.75□□□□□ -0.53
CLN3-247ENST00000636351 SPANXA1Q9NS26 97 aa11.75□□□□□ -0.53
CLN3-247ENST00000636351 MYCBP2O75592 4640 aa11.74□□□□□ -0.53
CLN3-247ENST00000636351 TIMM21Q9BVV7 248 aa11.74□□□□□ -0.53
CLN3-247ENST00000636351 CSDC2Q9Y534 153 aaKnown RBP11.74□□□□□ -0.53
CLN3-247ENST00000636351 K7EMI3 77 aa11.73□□□□□ -0.53
CLN3-247ENST00000636351 SMR3BP02814 79 aaPredicted RBP11.73□□□□□ -0.53
CLN3-247ENST00000636351 CHCHD10Q8WYQ3 142 aaPredicted RBP11.73□□□□□ -0.53
CLN3-247ENST00000636351 CYSLTR1Q9Y271 337 aa11.73□□□□□ -0.53
CLN3-247ENST00000636351 VPS13BQ7Z7G8 4022 aa11.72□□□□□ -0.53
CLN3-247ENST00000636351 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.72□□□□□ -0.53
CLN3-247ENST00000636351 GAGE12HA6NDE8 117 aa11.72□□□□□ -0.53
CLN3-247ENST00000636351 USP17L23D6RBM5 183 aa11.72□□□□□ -0.53
CLN3-247ENST00000636351 FA2HQ7L5A8 372 aa11.72□□□□□ -0.53
CLN3-247ENST00000636351 IGLV5-52A0A0A0MRZ9 124 aa11.71□□□□□ -0.53
CLN3-247ENST00000636351 LINC00959A0A1B0GUT2 108 aa11.71□□□□□ -0.53
CLN3-247ENST00000636351 GCSHP23434 173 aa11.71□□□□□ -0.53
CLN3-247ENST00000636351 XCL1P47992 114 aa11.71□□□□□ -0.53
CLN3-247ENST00000636351 SS18Q15532 418 aa11.71□□□□□ -0.53
CLN3-247ENST00000636351 C14orf177Q52M58 125 aa11.71□□□□□ -0.53
CLN3-247ENST00000636351 KRTAP26-1Q6PEX3 210 aa11.71□□□□□ -0.53
CLN3-247ENST00000636351 C2orf66Q6UXQ4 117 aa11.71□□□□□ -0.53
CLN3-247ENST00000636351 NTN5Q8WTR8 489 aaPredicted RBP11.71□□□□□ -0.53
CLN3-247ENST00000636351 TRAV13-1A0A0B4J241 112 aa11.7□□□□□ -0.54
CLN3-247ENST00000636351 CCL25O15444 150 aa11.7□□□□□ -0.54
CLN3-247ENST00000636351 HAMPP81172 84 aa11.7□□□□□ -0.54
CLN3-247ENST00000636351 G0S2P27469 103 aa11.69□□□□□ -0.54
CLN3-247ENST00000636351 OPRPNQ99935 248 aaPredicted RBP11.69□□□□□ -0.54
CLN3-247ENST00000636351 IFITM10A6NMD0 228 aa11.68□□□□□ -0.54
CLN3-247ENST00000636351 MRPS36P82909 103 aaKnown RBP11.68□□□□□ -0.54
CLN3-247ENST00000636351 SRRM2Q9UQ35 2752 aaKnown RBP11.67□□□□□ -0.54
CLN3-247ENST00000636351 Q6ZN92 141 aa11.67□□□□□ -0.54
CLN3-247ENST00000636351 C18orf32Q8TCD1 76 aa11.67□□□□□ -0.54
CLN3-247ENST00000636351 PYGO1Q9Y3Y4 419 aa11.67□□□□□ -0.54
CLN3-247ENST00000636351 IGLV4-3A0A075B6K6 122 aa11.66□□□□□ -0.54
CLN3-247ENST00000636351 C1orf196B1AJZ1 125 aa11.66□□□□□ -0.54
CLN3-247ENST00000636351 FAM229AH3BQW9 127 aa11.66□□□□□ -0.54
CLN3-247ENST00000636351 SCO1O75880 301 aa11.66□□□□□ -0.54
CLN3-247ENST00000636351 TMEM141Q96I45 108 aa11.66□□□□□ -0.54
CLN3-247ENST00000636351 FOXI1Q12951 378 aa11.65□□□□□ -0.54
CLN3-247ENST00000636351 AP5S1Q9NUS5 200 aa11.65□□□□□ -0.54
CLN3-247ENST00000636351 FLG2Q5D862 2391 aaPredicted RBP11.65□□□□□ -0.54
CLN3-247ENST00000636351 hDV102S1A0JD36 115 aa11.64□□□□□ -0.55
CLN3-247ENST00000636351 CFAP161Q6P656 301 aa11.64□□□□□ -0.55
CLN3-247ENST00000636351 CD164L2Q6UWJ8 174 aa11.64□□□□□ -0.55
CLN3-247ENST00000636351 TEX43Q6ZNM6 134 aa11.64□□□□□ -0.55
CLN3-247ENST00000636351 TOMM6Q96B49 74 aa11.64□□□□□ -0.55
CLN3-247ENST00000636351 C2orf88Q9BSF0 95 aa11.64□□□□□ -0.55
CLN3-247ENST00000636351 LINC01546A6NGU7 62 aa11.63□□□□□ -0.55
CLN3-247ENST00000636351 PRSS1P07477 247 aa11.63□□□□□ -0.55
CLN3-247ENST00000636351 FAM104AQ969W3 186 aa11.63□□□□□ -0.55
CLN3-247ENST00000636351 SCGB3A1Q96QR1 104 aa11.63□□□□□ -0.55
CLN3-247ENST00000636351 TRGC2P03986 189 aa11.62□□□□□ -0.55
CLN3-247ENST00000636351 RAB5BP61020 215 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 165.1 ms