RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 ZNF25P17030 456 aaPredicted RBP12.07□□□□□ -0.48
CLN3-243ENST00000635973 RAB5AP20339 215 aa12.07□□□□□ -0.48
CLN3-243ENST00000635973 FUSP35637 526 aaKnown RBP eCLIP12.07□□□□□ -0.48
CLN3-243ENST00000635973 REG3AQ06141 175 aa12.07□□□□□ -0.48
CLN3-243ENST00000635973 SMAGPQ0VAQ4 97 aa12.07□□□□□ -0.48
CLN3-243ENST00000635973 MIAQ16674 131 aa12.07□□□□□ -0.48
CLN3-243ENST00000635973 ENHOQ6UWT2 76 aa12.07□□□□□ -0.48
CLN3-243ENST00000635973 OR5A1Q8NGJ0 315 aa12.06□□□□□ -0.48
CLN3-243ENST00000635973 TMEM18Q96B42 140 aa12.06□□□□□ -0.48
CLN3-243ENST00000635973 MRPL18Q9H0U6 180 aaKnown RBP12.06□□□□□ -0.48
CLN3-243ENST00000635973 IGKV3OR2-268A0A0C4DH90 116 aa12.05□□□□□ -0.48
CLN3-243ENST00000635973 FABP9Q0Z7S8 132 aa12.05□□□□□ -0.48
CLN3-243ENST00000635973 SMCO4Q9NRQ5 59 aa12.05□□□□□ -0.48
CLN3-243ENST00000635973 PRR34Q9NV39 138 aa12.05□□□□□ -0.48
CLN3-243ENST00000635973 DGAT2L7PQ6IED9 249 aa12.04□□□□□ -0.48
CLN3-243ENST00000635973 EPM2AB3EWF7 344 aa12.03□□□□□ -0.48
CLN3-243ENST00000635973 CBLN2Q8IUK8 224 aa12.03□□□□□ -0.48
CLN3-243ENST00000635973 TRAPPC1Q9Y5R8 145 aa12.03□□□□□ -0.48
CLN3-243ENST00000635973 IGLV10-54A0A075B6I4 117 aa12.02□□□□□ -0.49
CLN3-243ENST00000635973 PRSS47A8MTI9 375 aa12.02□□□□□ -0.49
CLN3-243ENST00000635973 MRPL52Q86TS9 123 aaKnown RBP12.02□□□□□ -0.49
CLN3-243ENST00000635973 Q8N8P6 123 aa12.02□□□□□ -0.49
CLN3-243ENST00000635973 NXT2Q9NPJ8 142 aaKnown RBP12.02□□□□□ -0.49
CLN3-243ENST00000635973 TRAV8-4A0A0B4J246 113 aa12□□□□□ -0.49
CLN3-243ENST00000635973 LECT2O14960 151 aa12□□□□□ -0.49
CLN3-243ENST00000635973 GCSHP23434 173 aa12□□□□□ -0.49
CLN3-243ENST00000635973 BAALCQ8WXS3 180 aa12□□□□□ -0.49
CLN3-243ENST00000635973 UBE2D4Q9Y2X8 147 aa12□□□□□ -0.49
CLN3-243ENST00000635973 IFI27P40305 119 aaPredicted RBP11.99□□□□□ -0.49
CLN3-243ENST00000635973 RPL39P62891 51 aaKnown RBP11.99□□□□□ -0.49
CLN3-243ENST00000635973 PRSS3P2Q8NHM4 247 aa11.99□□□□□ -0.49
CLN3-243ENST00000635973 ALKBH7Q9BT30 221 aaPredicted RBP11.99□□□□□ -0.49
CLN3-243ENST00000635973 IGLV5-52A0A0A0MRZ9 124 aa11.98□□□□□ -0.49
CLN3-243ENST00000635973 LRCOL1A6NCL2 159 aa11.98□□□□□ -0.49
CLN3-243ENST00000635973 KRTAP10-1P60331 282 aa11.98□□□□□ -0.49
CLN3-243ENST00000635973 ORMDL2Q53FV1 153 aa11.98□□□□□ -0.49
CLN3-243ENST00000635973 ZNF664Q8N3J9 261 aa11.98□□□□□ -0.49
CLN3-243ENST00000635973 YPEL4Q96NS1 127 aa11.98□□□□□ -0.49
CLN3-243ENST00000635973 CDC42SE2Q9NRR3 84 aa11.98□□□□□ -0.49
CLN3-243ENST00000635973 K7EMI3 77 aa11.97□□□□□ -0.49
CLN3-243ENST00000635973 TIMM21Q9BVV7 248 aa11.97□□□□□ -0.49
CLN3-243ENST00000635973 SPANXA1Q9NS26 97 aa11.97□□□□□ -0.49
CLN3-243ENST00000635973 CSDC2Q9Y534 153 aaKnown RBP11.97□□□□□ -0.49
CLN3-243ENST00000635973 XGP55808 180 aa11.96□□□□□ -0.49
CLN3-243ENST00000635973 RNASE13Q5GAN3 156 aaKnown RBP11.96□□□□□ -0.49
CLN3-243ENST00000635973 Q6ZUT4 128 aa11.96□□□□□ -0.49
CLN3-243ENST00000635973 Q8N814 137 aa11.96□□□□□ -0.49
CLN3-243ENST00000635973 NTN5Q8WTR8 489 aaPredicted RBP11.96□□□□□ -0.49
CLN3-243ENST00000635973 WFDC2Q14508 124 aa11.95□□□□□ -0.5
CLN3-243ENST00000635973 FA2HQ7L5A8 372 aa11.95□□□□□ -0.5
CLN3-243ENST00000635973 CYSLTR1Q9Y271 337 aa11.95□□□□□ -0.5
CLN3-243ENST00000635973 SS18Q15532 418 aa11.94□□□□□ -0.5
CLN3-243ENST00000635973 CHCHD10Q8WYQ3 142 aaPredicted RBP11.94□□□□□ -0.5
CLN3-243ENST00000635973 LINC00959A0A1B0GUT2 108 aa11.93□□□□□ -0.5
CLN3-243ENST00000635973 GAGE12HA6NDE8 117 aa11.93□□□□□ -0.5
CLN3-243ENST00000635973 G0S2P27469 103 aa11.93□□□□□ -0.5
CLN3-243ENST00000635973 C14orf177Q52M58 125 aa11.93□□□□□ -0.5
CLN3-243ENST00000635973 C2orf66Q6UXQ4 117 aa11.93□□□□□ -0.5
CLN3-243ENST00000635973 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.92□□□□□ -0.5
CLN3-243ENST00000635973 USP17L23D6RBM5 183 aa11.92□□□□□ -0.5
CLN3-243ENST00000635973 INAFM2P0DMQ5 153 aa11.92□□□□□ -0.5
CLN3-243ENST00000635973 XCL1P47992 114 aa11.92□□□□□ -0.5
CLN3-243ENST00000635973 Q5VSD8 79 aa11.92□□□□□ -0.5
CLN3-243ENST00000635973 KRTAP26-1Q6PEX3 210 aa11.92□□□□□ -0.5
CLN3-243ENST00000635973 HERC1Q15751 4861 aa11.92□□□□□ -0.5
CLN3-243ENST00000635973 TRAV13-1A0A0B4J241 112 aa11.91□□□□□ -0.5
CLN3-243ENST00000635973 CCL25O15444 150 aa11.91□□□□□ -0.5
CLN3-243ENST00000635973 MRPS36P82909 103 aaKnown RBP11.91□□□□□ -0.5
CLN3-243ENST00000635973 OPRPNQ99935 248 aaPredicted RBP11.91□□□□□ -0.5
CLN3-243ENST00000635973 C18orf32Q8TCD1 76 aa11.9□□□□□ -0.5
CLN3-243ENST00000635973 PYGO1Q9Y3Y4 419 aa11.9□□□□□ -0.5
CLN3-243ENST00000635973 IFITM10A6NMD0 228 aa11.89□□□□□ -0.51
CLN3-243ENST00000635973 FAM229AH3BQW9 127 aa11.89□□□□□ -0.51
CLN3-243ENST00000635973 SMR3BP02814 79 aaPredicted RBP11.89□□□□□ -0.51
CLN3-243ENST00000635973 Q6ZN92 141 aa11.89□□□□□ -0.51
CLN3-243ENST00000635973 IGLV4-3A0A075B6K6 122 aa11.88□□□□□ -0.51
CLN3-243ENST00000635973 C1orf196B1AJZ1 125 aa11.88□□□□□ -0.51
CLN3-243ENST00000635973 SCO1O75880 301 aa11.88□□□□□ -0.51
CLN3-243ENST00000635973 TMEM141Q96I45 108 aa11.88□□□□□ -0.51
CLN3-243ENST00000635973 AP5S1Q9NUS5 200 aa11.88□□□□□ -0.51
CLN3-243ENST00000635973 TEX43Q6ZNM6 134 aa11.87□□□□□ -0.51
CLN3-243ENST00000635973 TOMM6Q96B49 74 aa11.87□□□□□ -0.51
CLN3-243ENST00000635973 LINC01546A6NGU7 62 aa11.86□□□□□ -0.51
CLN3-243ENST00000635973 TRGC2P03986 189 aa11.86□□□□□ -0.51
CLN3-243ENST00000635973 RAB5BP61020 215 aa11.86□□□□□ -0.51
CLN3-243ENST00000635973 HAMPP81172 84 aa11.86□□□□□ -0.51
CLN3-243ENST00000635973 FOXI1Q12951 378 aa11.86□□□□□ -0.51
CLN3-243ENST00000635973 CFAP161Q6P656 301 aa11.86□□□□□ -0.51
CLN3-243ENST00000635973 CD164L2Q6UWJ8 174 aa11.86□□□□□ -0.51
CLN3-243ENST00000635973 C2orf88Q9BSF0 95 aa11.86□□□□□ -0.51
CLN3-243ENST00000635973 SCGB3A1Q96QR1 104 aa11.85□□□□□ -0.51
CLN3-243ENST00000635973 FAT1Q14517 4588 aa11.84□□□□□ -0.51
CLN3-243ENST00000635973 hDV102S1A0JD36 115 aa11.84□□□□□ -0.51
CLN3-243ENST00000635973 LINC01549A6NIU2 74 aa11.84□□□□□ -0.51
CLN3-243ENST00000635973 COLCA2A8K830 154 aa11.84□□□□□ -0.51
CLN3-243ENST00000635973 PRSS1P07477 247 aa11.84□□□□□ -0.51
CLN3-243ENST00000635973 NPSP0C0P6 89 aa11.84□□□□□ -0.51
CLN3-243ENST00000635973 LINC00614P0C842 121 aa11.84□□□□□ -0.51
CLN3-243ENST00000635973 PAPPA-AS1Q5QFB9 102 aa11.84□□□□□ -0.51
CLN3-243ENST00000635973 FAM104AQ969W3 186 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 141.5 ms